Rmu_sc0001004.1_g000016

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001004.1
OG0000113
Physical Location & Seq
Forward (+)
52319 .. 53314
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001004.1_g000016.1.cds

Sequence Viewer

Length: 996 bp
atgatatctgagttattcagtcaaaattatctcttgcttttcgttatatttgactgcttcaagctactcgtggaggaggatttgatattccgatccatagagttccaagcgttattgaactctttaagtgatgatggtactattccgagcagagagcttgattttccggtaatgaatttaccaccgtttgaatttgaatatattaggatcgttggtacttgcaatggcctgataggtctactacttgaagatgaattaccttcaactgctattatgatatggaacccttgtactagagactcccaggtattaccacaacctcctattattcctcaacacctcaagtttttcggattcggttatgattccactggtgatgattacaaggtaatactgggtggttgggattctagttctaaatttgctgttgtgtttacactgaaaacgggttcgtggaggaagcttcaaagcctgaccaagtatagggtgtctgggattgggtatttagttaacgaagctctacattgggtactatgtgaaccgcatgagcggcttatagtctatccttcaagaatactgtcattagatctagcagaggagaagtttcatgagcttgcattcccctatcctcccaacctggtagacattcataatttgcatgctagagttggagtttttaataattgcctaaccctgtacattcaaaccaagtatagcagagctgggtgggagtttaagatgtgggttatgaaggaatatggagtcaaggaatcctggactgaagtcgtatatatcccttcagggattctaggtgaacattatacatgcaggacattaatttctgagaatggtgaagttttgatatctctgaatatccttggctcgttggcaatatataatccgaaggacaacacatttaggattttgttggacgacaatcatgtagaaactttagtttcaccactaattggcagtaatattggtgcaagcgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

331

Amino Acids

37.71

Weight (kDa)

5.0

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 968
AccBSI CCGCTC 1 cut(s) 550
AccI GTMKAC 2 cut(s) 238, 642
AciI CCGC 2 cut(s) 542, 550
AclWI GGATC 2 cut(s) 87, 215
AcsI RAATTY 3 cut(s) 175, 191, 419
AcuI CTGAAG 2 cut(s) 783, 801
AfaI GTAC 5 cut(s) 139, 217, 292, 531, 698
AfiI CCNNNNNNNGG 2 cut(s) 483, 968
AgsI TTSAA 9 cut(s) 61, 118, 191, 197, 248, 264, 467, 570, 704
AjnI CCWGG 3 cut(s) 303, 636, 773
AluBI AGCT 6 cut(s) 64, 157, 463, 518, 613, 722
AluI AGCT 6 cut(s) 64, 157, 463, 518, 613, 722
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 2 cut(s) 87, 215
AoxI GGCC 1 cut(s) 226
ApoI RAATTY 3 cut(s) 175, 191, 419
AseI ATTAAT 1 cut(s) 836
AsuHPI GGTGA 4 cut(s) 386, 824, 863, 951
BarI GAAGNNNNNNTAC 2 cut(s) 240, 272
BauI CACGAG 1 cut(s) 68
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 3 cut(s) 305, 638, 775
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 5 cut(s) 294, 411, 590, 663, 809
BglII AGATCT 1 cut(s) 586
BisI GCNGC 1 cut(s) 551
BlsI GCNGC 1 cut(s) 552
Bme1390I CCNGG 3 cut(s) 305, 638, 775
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 3 cut(s) 305, 638, 775
BmrI ACTGGG 1 cut(s) 404
BmuI ACTGGG 1 cut(s) 404
BoxI GACNNNNGTC 1 cut(s) 782
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 303, 877
BsaWI WCCGGW 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 483, 968
Bse1I ACTGG 2 cut(s) 376, 399
Bse3DI GCAATG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 305, 638, 775
BseDI CCNNGG 2 cut(s) 303, 877
BseLI CCNNNNNNNGG 2 cut(s) 483, 968
BseMI GCAATG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 834
BseNI ACTGG 2 cut(s) 376, 399
BseRI GAGGAG 2 cut(s) 89, 611
BseYI CCCAGC 1 cut(s) 722
BshFI GGCC 1 cut(s) 228
BsiSI CCGG 1 cut(s) 167
BslI CCNNNNNNNGG 2 cut(s) 483, 968
BsmAI GTCTC 1 cut(s) 291
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 1 cut(s) 228
Bsp1407I TGTACA 1 cut(s) 696
Bsp143I GATC 3 cut(s) 92, 207, 586
BspACI CCGC 2 cut(s) 542, 550
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 835
BspHI TCATGA 1 cut(s) 607
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 2 cut(s) 87, 215
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 229
BsrGI TGTACA 1 cut(s) 696
BsrI ACTGG 2 cut(s) 376, 399
BssECI CCNNGG 2 cut(s) 303, 877
BssMI GATC 3 cut(s) 92, 207, 586
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 877
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 3 cut(s) 305, 638, 775
Bst4CI ACNGT 2 cut(s) 186, 579
BstAUI TGTACA 1 cut(s) 696
BstC8I GCNNGC 3 cut(s) 615, 660, 988
BstDEI CTNAG 2 cut(s) 9, 843
BstKTI GATC 3 cut(s) 95, 210, 589
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 3 cut(s) 92, 207, 586
BstMWI GCNNNNNNNGC 1 cut(s) 550
BstNI CCWGG 3 cut(s) 305, 638, 775
BstNSI RCATGY 2 cut(s) 662, 828
BstPAI GACNNNNGTC 1 cut(s) 782
BstSCI CCNGG 3 cut(s) 303, 636, 773
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BsuRI GGCC 1 cut(s) 228
BtsIMutI CAGTG 2 cut(s) 369, 437
Cac8I GCNNGC 3 cut(s) 615, 660, 988
CciI TCATGA 1 cut(s) 607
CsiI ACCWGGT 1 cut(s) 636
Csp6I GTAC 5 cut(s) 138, 216, 291, 530, 697
CviAII CATG 5 cut(s) 545, 608, 659, 825, 941
CviQI GTAC 5 cut(s) 138, 216, 291, 530, 697
DdeI CTNAG 2 cut(s) 9, 843
DpnI GATC 3 cut(s) 94, 209, 588
DpnII GATC 3 cut(s) 92, 207, 586
Eco130I CCWWGG 1 cut(s) 877
Eco32I GATATC 2 cut(s) 6, 864
Eco57I CTGAAG 2 cut(s) 783, 801
EcoRII CCWGG 3 cut(s) 303, 636, 773
EcoRV GATATC 2 cut(s) 6, 864
EcoT14I CCWWGG 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 877
FaeI CATG 5 cut(s) 548, 611, 662, 828, 944
FatI CATG 5 cut(s) 544, 607, 658, 824, 940
FblI GTMKAC 2 cut(s) 238, 642
Fnu4HI GCNGC 1 cut(s) 551
Fsp4HI GCNGC 1 cut(s) 551
FspBI CTAG 5 cut(s) 294, 411, 590, 663, 809
GluI GCNGC 1 cut(s) 551
GsaI CCCAGC 1 cut(s) 726
HaeIII GGCC 1 cut(s) 228
HapII CCGG 1 cut(s) 167
Hin1II CATG 5 cut(s) 548, 611, 662, 828, 944
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 7 cut(s) 299, 354, 365, 407, 762, 770, 805
HpaI GTTAAC 1 cut(s) 511
HpaII CCGG 1 cut(s) 167
HphI GGTGA 4 cut(s) 386, 824, 863, 951
Hpy166II GTNNAC 6 cut(s) 239, 435, 511, 539, 643, 815
Hpy188I TCNGA 7 cut(s) 10, 92, 147, 353, 844, 870, 903
Hpy188III TCNNGA 2 cut(s) 570, 608
Hpy8I GTNNAC 6 cut(s) 239, 435, 511, 539, 643, 815
HpyAV CCTTC 5 cut(s) 270, 576, 745, 807, 898
HpyCH4III ACNGT 2 cut(s) 186, 579
HpyCH4V TGCA 5 cut(s) 222, 617, 658, 828, 986
HpyF10VI GCNNNNNNNGC 1 cut(s) 550
HpyF3I CTNAG 2 cut(s) 9, 843
Hsp92II CATG 5 cut(s) 548, 611, 662, 828, 944
KspAI GTTAAC 1 cut(s) 511
Kzo9I GATC 3 cut(s) 92, 207, 586
MabI ACCWGGT 1 cut(s) 636
MaeI CTAG 5 cut(s) 294, 411, 590, 663, 809
MalI GATC 3 cut(s) 94, 209, 588
MbiI CCGCTC 1 cut(s) 550
MboI GATC 3 cut(s) 92, 207, 586
MboII GAAGA 1 cut(s) 260
MflI RGATCY 1 cut(s) 586
MluCI AATT 9 cut(s) 25, 175, 191, 254, 419, 652, 682, 837, 966
MlyI GAGTC 2 cut(s) 293, 771
MmeI TCCRAC 2 cut(s) 649, 909
MnlI CCTC 8 cut(s) 67, 70, 330, 342, 350, 450, 589, 639
MseI TTAA 5 cut(s) 125, 510, 678, 735, 836
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 3 cut(s) 305, 638, 775
Mva1269I GAATGC 1 cut(s) 617
MvaI CCWGG 3 cut(s) 305, 638, 775
MwoI GCNNNNNNNGC 1 cut(s) 550
NdeII GATC 3 cut(s) 92, 207, 586
NlaIII CATG 5 cut(s) 548, 611, 662, 828, 944
NlaIV GGNNCC 1 cut(s) 284
NspI RCATGY 2 cut(s) 662, 828
PaeI GCATGC 1 cut(s) 662
PagI TCATGA 1 cut(s) 607
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 5 cut(s) 354, 365, 407, 770, 805
PflMI CCANNNNNTGG 1 cut(s) 968
PfoI TCCNGGA 1 cut(s) 773
PkrI GCNGC 1 cut(s) 552
PleI GAGTC 2 cut(s) 293, 770
PpsI GAGTC 2 cut(s) 293, 770
PshAI GACNNNNGTC 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 836
Psp6I CCWGG 3 cut(s) 303, 636, 773
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 3 cut(s) 303, 636, 773
PspN4I GGNNCC 1 cut(s) 284
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 5 cut(s) 139, 217, 292, 531, 698
RsaNI GTAC 5 cut(s) 138, 216, 291, 530, 697
SaqAI TTAA 5 cut(s) 125, 510, 678, 735, 836
SatI GCNGC 1 cut(s) 551
Sau3AI GATC 3 cut(s) 92, 207, 586
SchI GAGTC 2 cut(s) 293, 771
ScrFI CCNGG 3 cut(s) 305, 638, 775
SexAI ACCWGGT 1 cut(s) 636
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
SphI GCATGC 1 cut(s) 662
Sse9I AATT 9 cut(s) 25, 175, 191, 254, 419, 652, 682, 837, 966
SsiI CCGC 2 cut(s) 542, 550
SspI AATATT 1 cut(s) 979
SspMI CTAG 5 cut(s) 294, 411, 590, 663, 809
StyD4I CCNGG 3 cut(s) 303, 636, 773
StyI CCWWGG 1 cut(s) 877
TaaI ACNGT 2 cut(s) 186, 579
TasI AATT 9 cut(s) 25, 175, 191, 254, 419, 652, 682, 837, 966
TatI WGTACW 2 cut(s) 290, 696
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 5 cut(s) 354, 365, 407, 770, 805
Tru1I TTAA 5 cut(s) 125, 510, 678, 735, 836
Tru9I TTAA 5 cut(s) 125, 510, 678, 735, 836
TscAI CASTG 2 cut(s) 376, 444
TspDTI ATGAA 5 cut(s) 188, 267, 596, 638, 764
TspRI CASTG 2 cut(s) 376, 444
Van91I CCANNNNNTGG 1 cut(s) 968
VspI ATTAAT 1 cut(s) 836
XapI RAATTY 3 cut(s) 175, 191, 419
XceI RCATGY 2 cut(s) 662, 828
XmiI GTMKAC 2 cut(s) 238, 642
XspI CTAG 5 cut(s) 294, 411, 590, 663, 809
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.