Rmu_sc0016442.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016442.1
OG0000113
Physical Location & Seq
Reverse (-)
1353 .. 2138
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016442.1_g000001.1.cds

Sequence Viewer

Length: 786 bp
atgttatggaatccttgtaccggagaataccgggtcctaccaaagcctcccgttcattcctccctagaatgttttttcgggttcggttatgattcgacaactgattattacaaagtaatactggggaatagctatttatctggttatgaatatgttgttgtctttatgctcaaaaggggttcatggaggaagattgaaaggctcaacaggtacttcggggtgaggtgggtagggtgtttagttaacgaaactctgcattgggtattgaaggaagaggaagacggtaggttaattacttcaaggatagtgtcatttgatttagcggaggagaaatttcatgagattccatttccctatcctcccgatccaaatgacaatgggtttttgattgccgaagttggaaatccttgtaattgcttaactctagtctttcaaaccgtgtatagtgatgttgctggcaatttaaagttgtgggttatgaaggagtatggagtcaaggaatcttggactgaagtcatgaacatctctccagaggttatggatgaagatgaaaacatccctttagagtttttgtatgatggtgaaccgtatacatacatggcatgcatttctgataatggcgagattttgatggagctggaacctataggcaccttggcattatataacccaagggaaaagaaatataggactgtcatgggctgtcctgattacatgtatgaaactgccccttatatagaaactttagtttcaccagtaaccggcagtaccggcgcaagtgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

261

Amino Acids

30.0

Weight (kDa)

4.57

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 590
AciI CCGC 1 cut(s) 323
AclWI GGATC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 332
AcuI CTGAAG 1 cut(s) 531
AfaI GTAC 3 cut(s) 19, 212, 769
AfiI CCNNNNNNNGG 2 cut(s) 20, 761
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 4 cut(s) 197, 268, 300, 434
AluBI AGCT 2 cut(s) 132, 637
AluI AGCT 2 cut(s) 132, 637
AlwI GGATC 1 cut(s) 359
ApoI RAATTY 1 cut(s) 332
AspLEI GCGC 1 cut(s) 776
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 232, 593, 744
AvaII GGWCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 285
BccI CCATC 2 cut(s) 572, 625
BcnI CCSGG 1 cut(s) 32
BfaI CTAG 2 cut(s) 65, 425
BfmI CTRYAG 1 cut(s) 645
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 3 cut(s) 35, 642, 652
BmrFI CCNGG 1 cut(s) 32
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BoxI GACNNNNGTC 1 cut(s) 512
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 513
BpuMI CCSGG 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 654, 671
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 761
Bse118I RCCGGY 2 cut(s) 761, 770
Bse1I ACTGG 2 cut(s) 126, 755
BseDI CCNNGG 2 cut(s) 654, 671
BseGI GGATG 2 cut(s) 547, 555
BseLI CCNNNNNNNGG 2 cut(s) 20, 761
BseNI ACTGG 2 cut(s) 126, 755
BseRI GAGGAG 1 cut(s) 341
BshNI GGYRCC 1 cut(s) 650
BsiSI CCGG 4 cut(s) 21, 31, 762, 771
BslI CCNNNNNNNGG 2 cut(s) 20, 761
Bsp143I GATC 1 cut(s) 364
BspACI CCGC 1 cut(s) 323
BspHI TCATGA 2 cut(s) 337, 516
BspLI GGNNCC 3 cut(s) 35, 642, 652
BspPI GGATC 1 cut(s) 359
BspT107I GGYRCC 1 cut(s) 650
BsrFI RCCGGY 2 cut(s) 761, 770
BsrI ACTGG 2 cut(s) 126, 755
BssAI RCCGGY 2 cut(s) 761, 770
BssECI CCNNGG 2 cut(s) 654, 671
BssMI GATC 1 cut(s) 364
BssNAI GTATAC 1 cut(s) 591
BssT1I CCWWGG 2 cut(s) 654, 671
Bst1107I GTATAC 1 cut(s) 591
Bst4CI ACNGT 4 cut(s) 284, 439, 588, 694
Bst6I CTCTTC 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 457, 604
BstF5I GGATG 2 cut(s) 547, 555
BstHHI GCGC 1 cut(s) 776
BstKTI GATC 1 cut(s) 367
BstMBI GATC 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 771
BstNSI RCATGY 2 cut(s) 606, 718
BstPAI GACNNNNGTC 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 645
BstV2I GAAGAC 1 cut(s) 285
BstZ17I GTATAC 1 cut(s) 591
BtsCI GGATG 2 cut(s) 547, 555
Cac8I GCNNGC 2 cut(s) 457, 604
CciI TCATGA 2 cut(s) 337, 516
CfoI GCGC 1 cut(s) 776
Cfr10I RCCGGY 2 cut(s) 761, 770
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 18, 211, 768
CviAII CATG 7 cut(s) 183, 338, 517, 598, 603, 697, 715
CviJI RGCY 5 cut(s) 46, 132, 202, 637, 702
CviKI_1 RGCY 5 cut(s) 46, 132, 202, 637, 702
CviQI GTAC 3 cut(s) 18, 211, 768
DpnI GATC 1 cut(s) 366
DpnII GATC 1 cut(s) 364
DraI TTTAAA 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 654, 671
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 531
EcoO109I RGGNCCY 1 cut(s) 34
EcoT14I CCWWGG 2 cut(s) 654, 671
EcoT22I ATGCAT 1 cut(s) 608
ErhI CCWWGG 2 cut(s) 654, 671
FaeI CATG 7 cut(s) 186, 341, 520, 601, 606, 700, 718
FatI CATG 7 cut(s) 182, 337, 516, 597, 602, 696, 714
FblI GTMKAC 1 cut(s) 590
FokI GGATG 2 cut(s) 542, 554
FspBI CTAG 2 cut(s) 65, 425
GlaI GCGC 1 cut(s) 775
GsuI CTGGAG 1 cut(s) 513
HapII CCGG 4 cut(s) 21, 31, 762, 771
HhaI GCGC 1 cut(s) 776
Hin1II CATG 7 cut(s) 186, 341, 520, 601, 606, 700, 718
Hin6I GCGC 1 cut(s) 774
HinP1I GCGC 1 cut(s) 774
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 5 cut(s) 10, 92, 343, 492, 500
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 4 cut(s) 21, 31, 762, 771
HphI GGTGA 3 cut(s) 232, 593, 744
Hpy166II GTNNAC 3 cut(s) 244, 584, 591
Hpy188I TCNGA 1 cut(s) 613
Hpy188III TCNNGA 5 cut(s) 338, 362, 517, 530, 707
Hpy8I GTNNAC 3 cut(s) 244, 584, 591
HpyAV CCTTC 2 cut(s) 262, 475
HpyCH4III ACNGT 4 cut(s) 284, 439, 588, 694
HpyCH4V TGCA 2 cut(s) 256, 606
HpyF10VI GCNNNNNNNGC 1 cut(s) 771
Hsp92II CATG 7 cut(s) 186, 341, 520, 601, 606, 700, 718
HspAI GCGC 1 cut(s) 774
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 1 cut(s) 364
LmnI GCTCC 1 cut(s) 634
MaeI CTAG 2 cut(s) 65, 425
MaeIII GTNAC 1 cut(s) 757
MalI GATC 1 cut(s) 366
MboI GATC 1 cut(s) 364
MboII GAAGA 4 cut(s) 202, 284, 290, 557
MluCI AATT 4 cut(s) 291, 332, 412, 460
MlyI GAGTC 1 cut(s) 501
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 8 cut(s) 57, 70, 180, 216, 268, 319, 369, 526
Mph1103I ATGCAT 1 cut(s) 608
MseI TTAA 4 cut(s) 243, 290, 419, 464
MspI CCGG 4 cut(s) 21, 31, 762, 771
MspR9I CCNGG 1 cut(s) 32
MwoI GCNNNNNNNGC 1 cut(s) 771
NciI CCSGG 1 cut(s) 32
NdeII GATC 1 cut(s) 364
NlaIII CATG 7 cut(s) 186, 341, 520, 601, 606, 700, 718
NlaIV GGNNCC 3 cut(s) 35, 642, 652
NsiI ATGCAT 1 cut(s) 608
NspI RCATGY 2 cut(s) 606, 718
PaeI GCATGC 1 cut(s) 606
PagI TCATGA 2 cut(s) 337, 516
PciI ACATGT 1 cut(s) 714
PfeI GAWTC 4 cut(s) 10, 92, 343, 500
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
PpuMI RGGWCCY 1 cut(s) 34
PscI ACATGT 1 cut(s) 714
PshAI GACNNNNGTC 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 35, 642, 652
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
RsaI GTAC 3 cut(s) 19, 212, 769
RsaNI GTAC 3 cut(s) 18, 211, 768
SaqAI TTAA 4 cut(s) 243, 290, 419, 464
Sau3AI GATC 1 cut(s) 364
Sau96I GGNCC 1 cut(s) 34
SchI GAGTC 1 cut(s) 501
ScrFI CCNGG 1 cut(s) 32
SetI ASST 8 cut(s) 134, 212, 227, 290, 537, 639, 646, 656
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 1 cut(s) 34
SphI GCATGC 1 cut(s) 606
Sse9I AATT 4 cut(s) 291, 332, 412, 460
SsiI CCGC 1 cut(s) 323
SspMI CTAG 2 cut(s) 65, 425
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 2 cut(s) 654, 671
TaaI ACNGT 4 cut(s) 284, 439, 588, 694
TaqI TCGA 1 cut(s) 95
TasI AATT 4 cut(s) 291, 332, 412, 460
TfiI GAWTC 4 cut(s) 10, 92, 343, 500
Tru1I TTAA 4 cut(s) 243, 290, 419, 464
Tru9I TTAA 4 cut(s) 243, 290, 419, 464
TspDTI ATGAA 9 cut(s) 44, 162, 171, 326, 494, 533, 558, 564, 735
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 332
XceI RCATGY 2 cut(s) 606, 718
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 2 cut(s) 65, 425
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.