RLG00000020788

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
68716117 .. 68717490
1374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020788

Sequence Viewer

Length: 339 bp
ATGAAGGATGATGTTCATGGTGCTGGTGGTCAGTTTGCAGTCACTCAGCTGGATTTTCCGGTAACGAAATCTATCCCTGATTACGGTTATAGAGTTGTTGTGGGTTCTTGCAATGGCTTGGTATGTGTAGAAGTTGACCGCGAGGCCATTATGTTATGGAACCCTTGTACTAGAGACTCCAAGGTTTTACCAAAACCTCCTCGAGTTATAAACTCCGAGTTTATCTACGATTTTAATGGATTCGGGTATGATTCTGCTAGTGACGACTACAAGTTTAGCTATGTACAAGGCAGACTCCAGGTTCCAGCATTATGTCCAGTGACTAACATACTAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

113

Amino Acids

12.44

Weight (kDa)

4.78

Isoelectric Point (pI)

29.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 25 - 92 8.6e-08 F-box associated beta propeller domain
FBA_1 PF07734 34 - 91 2.3e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AccII CGCG 1 cut(s) 141
AciI CCGC 1 cut(s) 139
AfaI GTAC 2 cut(s) 169, 285
AfiI CCNNNNNNNGG 1 cut(s) 83
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 2 cut(s) 49, 279
AluI AGCT 2 cut(s) 49, 279
Alw26I GTCTC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 144
AvaI CYCGRG 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 299
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 3 cut(s) 171, 258, 332
Bme1390I CCNGG 1 cut(s) 299
BmeT110I CYCGRG 1 cut(s) 201
BmiI GGNNCC 2 cut(s) 161, 303
BmrFI CCNGG 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 281
BsaJI CCNNGG 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 317
BseRI GAGGAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 168
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 201
Bsp1407I TGTACA 1 cut(s) 283
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 161, 303
BsrDI GCAATG 1 cut(s) 118
BsrGI TGTACA 1 cut(s) 283
BsrI ACTGG 1 cut(s) 317
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst2UI CCWGG 1 cut(s) 299
Bst4CI ACNGT 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 141
BstMAI GTCTC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstUI CGCG 1 cut(s) 141
BsuRI GGCC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 324
Csp6I GTAC 2 cut(s) 168, 284
CviAII CATG 1 cut(s) 17
CviJI RGCY 4 cut(s) 49, 117, 146, 279
CviKI_1 RGCY 4 cut(s) 49, 117, 146, 279
CviQI GTAC 2 cut(s) 168, 284
DdeI CTNAG 1 cut(s) 45
Eco130I CCWWGG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 1 cut(s) 20
FatI CATG 1 cut(s) 16
FokI GGATG 1 cut(s) 20
FspBI CTAG 3 cut(s) 171, 258, 332
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 59
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 176, 240, 251, 294
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4V TGCA 2 cut(s) 38, 111
HpyF3I CTNAG 1 cut(s) 45
Hsp92II CATG 1 cut(s) 20
LpnPI CCDG 8 cut(s) 9, 35, 72, 90, 284, 311, 318, 330
MaeI CTAG 3 cut(s) 171, 258, 332
MaeIII GTNAC 4 cut(s) 40, 61, 260, 319
MlyI GAGTC 2 cut(s) 170, 288
MnlI CCTC 3 cut(s) 136, 207, 210
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 1 cut(s) 141
NlaIII CATG 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 161, 303
NmuCI GTSAC 3 cut(s) 40, 260, 319
PaeR7I CTCGAG 1 cut(s) 201
PfeI GAWTC 2 cut(s) 240, 251
PleI GAGTC 2 cut(s) 170, 288
PpsI GAGTC 2 cut(s) 170, 288
PsiI TTATAA 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 161, 303
PspXI VCTCGAGB 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 2 cut(s) 169, 285
RsaNI GTAC 2 cut(s) 168, 284
SaqAI TTAA 1 cut(s) 234
SchI GAGTC 2 cut(s) 170, 288
ScrFI CCNGG 1 cut(s) 299
SetI ASST 5 cut(s) 51, 186, 199, 281, 303
Sfr274I CTCGAG 1 cut(s) 201
SlaI CTCGAG 1 cut(s) 201
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
SsiI CCGC 1 cut(s) 139
SspMI CTAG 3 cut(s) 171, 258, 332
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 202
TatI WGTACW 2 cut(s) 167, 283
TfiI GAWTC 2 cut(s) 240, 251
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 3 cut(s) 40, 260, 319
Tsp45I GTSAC 3 cut(s) 40, 260, 319
TspDTI ATGAA 2 cut(s) 5, 17
TspRI CASTG 1 cut(s) 324
XhoI CTCGAG 1 cut(s) 201
XspI CTAG 3 cut(s) 171, 258, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.