FvH4_6g40000

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Reverse (-)
31588298 .. 31589525
1228 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40000.t1

Sequence Viewer

Length: 762 bp
ATGTTATGGAACCCTTGTACTAGAGACTCCAAGGTTTTATCCAACCCTCCTCTAGTTATAGAGCCTAAAGATAGCAATTACTACTATCATGGATTTGGGTATGATTCTGCTACCGACGACTACAAGGTCATGCGGGGATTCGCTTATGATGCAAATGGTGCGGAGAAATTCATGACTCAAATCTTTGCACTCAAAACAGGTTCATGGAGGACTGTCAAAGATATTGATTATGTTGAACTGACAGAGGGGCAGGGAGTGTTTTTAAACGGAGCTCTGCATTGGTTAGGGGATCTATCCGATGGGGACAGAAAAATTTTGTCCTTTGATTTAGGGGCGGAGAAATTTCAGGAGACGATTCCATTACCCTATGATGACTGGTTTACTGATCTCTTGATTCATAGAAATCGTCTTTGTGTATGCACTCGCCCAACTAAATCCAACAGCTGCCACATATGGATGATGAAAGAATATGGGGTCAAGGAATCCTGGACTGAACTGGTACAATTTTCGTTGGATAATTATGTATGGGGTCCTGAGGATCATAGGCATTATGTCAGCCCTGTGTGCATTTTAGAGAATGGTGTAGTTTTGATCGACGGGTTGGGTTGTTATGAATGGCTCATGGTATTTTCTGATCTAAAGGAGAAGACATTCGAGCATGTTTTTCACGTCTCACAGGGCTTGTGTTTTAGAACAGTCATTCACCGTGAGACGTTAGTTTCACCAGACGTCCACACATACAAAACCAACTATGTGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

254

Amino Acids

29.34

Weight (kDa)

5.32

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 1 - 233 6.5e-28 F-box associated beta propeller domain
FBA_3 PF08268 2 - 221 4.3e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 125
AatII GACGTC 1 cut(s) 732
AciI CCGC 3 cut(s) 133, 161, 335
AclWI GGATC 2 cut(s) 297, 546
AcsI RAATTY 3 cut(s) 167, 312, 341
AcyI GRCGYC 1 cut(s) 729
AfaI GTAC 2 cut(s) 19, 501
AgsI TTSAA 1 cut(s) 236
AjiI CACGTC 1 cut(s) 670
AjnI CCWGG 1 cut(s) 485
AluBI AGCT 3 cut(s) 272, 444, 759
AluI AGCT 3 cut(s) 272, 444, 759
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 4 cut(s) 18, 344, 676, 704
AlwI GGATC 2 cut(s) 297, 546
ApeKI GCWGC 1 cut(s) 444
ApoI RAATTY 3 cut(s) 167, 312, 341
Asp700I GAANNNNTTC 1 cut(s) 650
AspS9I GGNCC 1 cut(s) 530
AsuHPI GGTGA 2 cut(s) 695, 714
AvaII GGWCC 1 cut(s) 530
AxyI CCTNAGG 1 cut(s) 534
BanII GRGCYC 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 431
BccI CCATC 1 cut(s) 293
BciT130I CCWGG 1 cut(s) 487
BcoDI GTCTC 4 cut(s) 18, 344, 676, 704
BfaI CTAG 3 cut(s) 21, 53, 760
BisI GCNGC 1 cut(s) 445
BlsI GCNGC 1 cut(s) 446
Bme1390I CCNGG 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 530
BmgBI CACGTC 1 cut(s) 670
BmgT120I GGNCC 1 cut(s) 530
BmiI GGNNCC 2 cut(s) 11, 531
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 653
BsaHI GRCGYC 1 cut(s) 729
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 380, 501
Bse21I CCTNAGG 1 cut(s) 534
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 525
BseNI ACTGG 2 cut(s) 380, 501
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 431
BsiHKAI GWGCWC 1 cut(s) 274
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 4 cut(s) 18, 344, 676, 704
BsmBI CGTCTC 3 cut(s) 344, 676, 704
BsmFI GGGAC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 274
Bsp143I GATC 5 cut(s) 289, 385, 538, 591, 634
BspACI CCGC 3 cut(s) 133, 161, 335
BspCNI CTCAG 1 cut(s) 526
BspHI TCATGA 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 11, 531
BspPI GGATC 2 cut(s) 297, 546
BsrI ACTGG 2 cut(s) 380, 501
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 5 cut(s) 289, 385, 538, 591, 634
BssNI GRCGYC 1 cut(s) 729
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 3 cut(s) 214, 697, 707
BstACI GRCGYC 1 cut(s) 729
BstAPI GCANNNNNTGC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 462
BstKTI GATC 5 cut(s) 292, 388, 541, 594, 637
BstMAI GTCTC 4 cut(s) 18, 344, 676, 704
BstMBI GATC 5 cut(s) 289, 385, 538, 591, 634
BstMWI GCNNNNNNNGC 3 cut(s) 149, 158, 564
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 431
BstV2I GAAGAC 1 cut(s) 653
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 670
BtsCI GGATG 1 cut(s) 462
CciI TCATGA 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 530
Csp6I GTAC 2 cut(s) 18, 500
CviAII CATG 6 cut(s) 89, 130, 172, 204, 622, 659
CviJI RGCY 7 cut(s) 64, 272, 444, 558, 619, 681, 759
CviKI_1 RGCY 7 cut(s) 64, 272, 444, 558, 619, 681, 759
CviQI GTAC 2 cut(s) 18, 500
DdeI CTNAG 1 cut(s) 534
DpnI GATC 5 cut(s) 291, 387, 540, 593, 636
DpnII GATC 5 cut(s) 289, 385, 538, 591, 634
DraI TTTAAA 1 cut(s) 264
DrdI GACNNNNNNGTC 1 cut(s) 125
DseDI GACNNNNNNGTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 530
Eco53kI GAGCTC 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 3 cut(s) 344, 676, 704
FaeI CATG 6 cut(s) 92, 133, 175, 207, 625, 662
FaqI GGGAC 1 cut(s) 317
FatI CATG 6 cut(s) 88, 129, 171, 203, 621, 658
FauI CCCGC 1 cut(s) 126
FauNDI CATATG 1 cut(s) 452
Fnu4HI GCNGC 1 cut(s) 445
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 1 cut(s) 445
FspBI CTAG 3 cut(s) 21, 53, 760
GluI GCNGC 1 cut(s) 445
Hin1I GRCGYC 1 cut(s) 729
Hin1II CATG 6 cut(s) 92, 133, 175, 207, 625, 662
HinfI GANTC 7 cut(s) 26, 104, 138, 175, 355, 394, 482
HphI GGTGA 2 cut(s) 695, 714
Hpy166II GTNNAC 2 cut(s) 381, 733
Hpy188I TCNGA 2 cut(s) 298, 634
Hpy188III TCNNGA 4 cut(s) 172, 347, 391, 533
Hpy8I GTNNAC 2 cut(s) 381, 733
Hpy99I CGWCG 2 cut(s) 119, 599
HpyCH4III ACNGT 3 cut(s) 214, 697, 707
HpyCH4IV ACGT 3 cut(s) 669, 713, 729
HpyCH4V TGCA 5 cut(s) 152, 188, 277, 420, 567
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 158, 564
HpyF3I CTNAG 1 cut(s) 534
HpySE526I ACGT 3 cut(s) 669, 713, 729
Hsp92I GRCGYC 1 cut(s) 729
Hsp92II CATG 6 cut(s) 92, 133, 175, 207, 625, 662
Kzo9I GATC 5 cut(s) 289, 385, 538, 591, 634
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 1 cut(s) 139
MaeI CTAG 3 cut(s) 21, 53, 760
MaeII ACGT 3 cut(s) 669, 713, 729
MalI GATC 5 cut(s) 291, 387, 540, 593, 636
MboI GATC 5 cut(s) 289, 385, 538, 591, 634
MboII GAAGA 1 cut(s) 658
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 6 cut(s) 76, 167, 312, 341, 503, 517
MlyI GAGTC 2 cut(s) 20, 169
MmeI TCCRAC 3 cut(s) 66, 462, 492
MnlI CCTC 5 cut(s) 57, 60, 201, 238, 529
MroXI GAANNNNTTC 1 cut(s) 650
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 455
MspA1I CMGCKG 1 cut(s) 444
MspR9I CCNGG 1 cut(s) 487
MvaI CCWGG 1 cut(s) 487
MwoI GCNNNNNNNGC 3 cut(s) 149, 158, 564
NdeI CATATG 1 cut(s) 452
NdeII GATC 5 cut(s) 289, 385, 538, 591, 634
NlaIII CATG 6 cut(s) 92, 133, 175, 207, 625, 662
NlaIV GGNNCC 2 cut(s) 11, 531
NspI RCATGY 1 cut(s) 662
PagI TCATGA 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 650
PfeI GAWTC 5 cut(s) 104, 138, 355, 394, 482
PfoI TCCNGGA 1 cut(s) 485
PkrI GCNGC 1 cut(s) 446
PleI GAGTC 2 cut(s) 20, 169
PpsI GAGTC 2 cut(s) 20, 169
PpuMI RGGWCCY 1 cut(s) 530
Psp124BI GAGCTC 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 11, 531
PspPI GGNCC 1 cut(s) 530
PspPPI RGGWCCY 1 cut(s) 530
PsuI RGATCY 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 444
RsaI GTAC 2 cut(s) 19, 501
RsaNI GTAC 2 cut(s) 18, 500
RseI CAYNNNNRTG 1 cut(s) 455
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 445
Sau3AI GATC 5 cut(s) 289, 385, 538, 591, 634
Sau96I GGNCC 1 cut(s) 530
SchI GAGTC 2 cut(s) 20, 169
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 1 cut(s) 274
SetI ASST 9 cut(s) 36, 129, 202, 274, 446, 672, 716, 732, 761
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 455
Sse9I AATT 6 cut(s) 76, 167, 312, 341, 503, 517
SsiI CCGC 3 cut(s) 133, 161, 335
SspMI CTAG 3 cut(s) 21, 53, 760
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 214, 697, 707
TaiI ACGT 3 cut(s) 672, 716, 732
TaqI TCGA 2 cut(s) 594, 654
TasI AATT 6 cut(s) 76, 167, 312, 341, 503, 517
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 5 cut(s) 104, 138, 355, 394, 482
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseI GCWGC 1 cut(s) 444
TspDTI ATGAA 5 cut(s) 160, 192, 386, 476, 627
TspGWI ACGGA 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 530
XapI RAATTY 3 cut(s) 167, 312, 341
XceI RCATGY 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 650
XspI CTAG 3 cut(s) 21, 53, 760
ZraI GACGTC 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.