Rorug05G0332700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000113
Physical Location & Seq
Forward (+)
40267016 .. 40267576
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0332700.1

Sequence Viewer

Length: 561 bp
ATGGCAATGGCTGGAGATCCAGATATTCTTAGTGACTTCATTGCGCCTCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACTGGCATGCGTGTTGTCTTTGAAGAAGATGAGCCCAAAAACTTCACAGTTCTGAAGGCAACCTCCGCTGAGTTCCCTGCCCTTAATGGTCAGAGTGTTTCATATGCAGTTCTTGAATTCCCATCTGGCACTACTAACCCACCTCACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTGTTGACGGTACCCTTGAAGTTGGCTTTGTCGACACAAAAAACAACCTCTTTACTCAGACTCTTCAGGTAGGTGACCTGTTTGTTTTTCCTAAGGGACTTGTTCACTACCAGTACAATGCCGATTCACAAAACTCGGCTACAGCAATTTCTGCTTTTGGAAGTGCAAGTGCAGGAACTGTGTCAATTCCTTCCACTTTGTTCGCCACCAACATCGATGACAATGCCTTGGCTTTGTCCTTCAAGACTGATGTAGCTACAATTCAACAGCTTAAGGCTGGTCTCGCTCCCAAGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

186

Amino Acids

19.8

Weight (kDa)

4.44

Isoelectric Point (pI)

23.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 39 - 174 6e-31 Cupin
Cupin_2 PF07883 65 - 136 4.8e-12 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 1 cut(s) 272
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 150
AclWI GGATC 1 cut(s) 11
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 2 cut(s) 158, 311
AfaI GTAC 2 cut(s) 274, 377
AfiI CCNNNNNNNGG 1 cut(s) 53
AflII CTTAAG 1 cut(s) 533
AgsI TTSAA 5 cut(s) 107, 200, 281, 505, 527
AluBI AGCT 4 cut(s) 253, 518, 532, 556
AluI AGCT 4 cut(s) 253, 518, 532, 556
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 548
AlwI GGATC 1 cut(s) 11
AlwNI CAGNNNCTG 1 cut(s) 440
ApoI RAATTY 1 cut(s) 200
Asp718I GGTACC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 347
AxyI CCTNAGG 1 cut(s) 354
BanI GGYRCC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 120, 255
Bbv12I GWGCWC 1 cut(s) 255
BccI CCATC 2 cut(s) 59, 214
BcgI CGANNNNNNTGC 2 cut(s) 467, 501
BcoDI GTCTC 1 cut(s) 548
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 533
BlpI GCTNAGC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 33
Bpu1102I GCTNAGC 1 cut(s) 249
Bsa29I ATCGAT 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 548
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 91, 373
Bse21I CCTNAGG 1 cut(s) 354
Bse3DI GCAATG 2 cut(s) 12, 39
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMI GCAATG 2 cut(s) 12, 39
BseMII CTCAG 3 cut(s) 144, 240, 332
BseNI ACTGG 2 cut(s) 91, 373
BseRI GAGGAG 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 453
BshNI GGYRCC 1 cut(s) 272
BshVI ATCGAT 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 255
BslFI GGGAC 1 cut(s) 372
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 548
BsmFI GGGAC 1 cut(s) 372
Bso31I GGTCTC 1 cut(s) 548
Bsp1286I GDGCHC 2 cut(s) 120, 255
Bsp143I GATC 1 cut(s) 16
Bsp1720I GCTNAGC 1 cut(s) 249
BspACI CCGC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 145, 241, 331
BspDI ATCGAT 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 274
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 272
BspTI CTTAAG 1 cut(s) 533
BspTNI GGTCTC 1 cut(s) 548
BsrDI GCAATG 2 cut(s) 12, 39
BsrI ACTGG 2 cut(s) 91, 373
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 4 cut(s) 61, 133, 272, 442
Bst6I CTCTTC 2 cut(s) 263, 330
BstAFI CTTAAG 1 cut(s) 533
BstAPI GCANNNNNTGC 1 cut(s) 413
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 5 cut(s) 29, 153, 249, 318, 354
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 1 cut(s) 19
BstMAI GTCTC 1 cut(s) 548
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 3 cut(s) 149, 413, 545
BstNSI RCATGY 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 477
Bsu36I CCTNAGG 1 cut(s) 354
BsuTUI ATCGAT 1 cut(s) 477
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 92
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 477
Csp6I GTAC 2 cut(s) 273, 376
CviAII CATG 1 cut(s) 91
CviQI GTAC 2 cut(s) 273, 376
DdeI CTNAG 5 cut(s) 29, 153, 249, 318, 354
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 263, 330
EarI CTCTTC 2 cut(s) 263, 330
Ecl136II GAGCTC 1 cut(s) 253
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 2 cut(s) 120, 255
Eco31I GGTCTC 1 cut(s) 548
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 2 cut(s) 158, 311
Eco81I CCTNAGG 1 cut(s) 354
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 253
EcoO65I GGTNACC 1 cut(s) 335
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 120, 255
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 1 cut(s) 94
FaiI YATR 5 cut(s) 82, 92, 187, 189, 559
FaqI GGGAC 1 cut(s) 372
FatI CATG 1 cut(s) 90
FauNDI CATATG 1 cut(s) 187
FblI GTMKAC 1 cut(s) 294
FokI GGATG 1 cut(s) 222
FriOI GRGCYC 2 cut(s) 120, 255
GlaI GCGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 33
HhaI GCGC 1 cut(s) 46
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 2 cut(s) 268, 295
HindII GTYRAC 2 cut(s) 268, 295
HinfI GANTC 2 cut(s) 322, 386
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 268, 295, 367
Hpy188I TCNGA 3 cut(s) 138, 177, 321
Hpy188III TCNNGA 3 cut(s) 20, 197, 505
Hpy8I GTNNAC 3 cut(s) 268, 295, 367
HpyAV CCTTC 3 cut(s) 133, 462, 511
HpyCH4III ACNGT 4 cut(s) 61, 133, 272, 442
HpyCH4V TGCA 3 cut(s) 191, 428, 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 413, 545
HpyF3I CTNAG 5 cut(s) 29, 153, 249, 318, 354
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 44
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 258, 553
LpnPI CCDG 9 cut(s) 33, 72, 174, 195, 314, 353, 386, 420, 525
MaeIII GTNAC 2 cut(s) 32, 335
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 5 cut(s) 67, 119, 122, 250, 317
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 120, 255
MluCI AATT 4 cut(s) 200, 408, 447, 522
MlyI GAGTC 1 cut(s) 316
MnlI CCTC 6 cut(s) 57, 157, 237, 249, 266, 320
MseI TTAA 2 cut(s) 168, 534
MslI CAYNNNNRTG 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 152
MspCI CTTAAG 1 cut(s) 533
MwoI GCNNNNNNNGC 3 cut(s) 149, 413, 545
NdeI CATATG 1 cut(s) 187
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 377
NmuCI GTSAC 2 cut(s) 32, 335
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PfeI GAWTC 1 cut(s) 386
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
Psp124BI GAGCTC 1 cut(s) 255
PspEI GGTNACC 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 274, 377
RsaNI GTAC 2 cut(s) 273, 376
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 168, 534
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 316
SduI GDGCHC 2 cut(s) 120, 255
SfcI CTRYAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 533
SmoI CTYRAG 1 cut(s) 533
SphI GCATGC 1 cut(s) 94
Sse9I AATT 4 cut(s) 200, 408, 447, 522
SsiI CCGC 1 cut(s) 150
SstI GAGCTC 1 cut(s) 255
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 4 cut(s) 61, 133, 272, 442
TaqI TCGA 2 cut(s) 294, 477
TasI AATT 4 cut(s) 200, 408, 447, 522
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 386
Tru1I TTAA 2 cut(s) 168, 534
Tru9I TTAA 2 cut(s) 168, 534
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 2 cut(s) 32, 335
Tsp45I GTSAC 2 cut(s) 32, 335
TspDTI ATGAA 2 cut(s) 28, 174
TspRI CASTG 1 cut(s) 91
Vha464I CTTAAG 1 cut(s) 533
XapI RAATTY 1 cut(s) 200
XceI RCATGY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.