RLG00000020790

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
68724332 .. 68726069
1738 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020790

Sequence Viewer

Length: 531 bp
ATGTTATGGAACCCTTGTACTGGAGAGTCCAAGTTATTGCCAAAACCTACCGCTTTCGATACGAGTTATGGAGTGTTCTACGGATTTGGTTATGATTCCGCTGCTGATGATTGCAAGATAGTAAAGGGGAGTTGTAGGTCACGTAATGGAGGGGGTATAGGTGATGGTCCTCAGGAAACGAACGTTGAGGTCTTTGCACTAAAGACTGGCTGTTGGAGGACCCTTGAGACTGTCGATAATGTTGTGTTATCGGACCAGGGCAGCTTTGTAAACGGAGCTCTACATTGGTTACAACTTCAGTGGTTTAACGAGCAGCGGTGCCTAGTTGCTTTAAGTATAGCCCAAATAGAAAGAGATCATAAATCCAGCCCACACGACAAGGGGAAGGCCCTTGCAAGATTCCAAAGTTTCCAACACCCGAACGGTTGCAGCCAACAAACCCTCACTCAGAGCAACCTGAAGAGGCAAAAGGGAAAAGCAGCAAGATCACGAAGGCTACCGGAAATCTCAGTCCGGCTACGTTTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

19.66

Weight (kDa)

9.38

Isoelectric Point (pI)

50.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 1 - 99 1.5e-11 F-box associated beta propeller domain
FBA_3 PF08268 2 - 109 2.2e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 318
AciI CCGC 3 cut(s) 51, 99, 316
AclI AACGTT 1 cut(s) 183
AcuI CTGAAG 2 cut(s) 281, 479
AfaI GTAC 1 cut(s) 19
AfiI CCNNNNNNNGG 1 cut(s) 20
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 264, 278
AluI AGCT 2 cut(s) 264, 278
Alw21I GWGCWC 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 221
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 5 cut(s) 101, 261, 313, 429, 479
AspS9I GGNCC 4 cut(s) 167, 219, 253, 388
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 3 cut(s) 167, 219, 253
AxyI CCTNAGG 1 cut(s) 171
BanI GGYRCC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 280
BbvI GCAGC 5 cut(s) 88, 273, 325, 441, 491
BccI CCATC 1 cut(s) 158
BciT130I CCWGG 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 323
BisI GCNGC 5 cut(s) 102, 262, 314, 430, 480
BlsI GCNGC 5 cut(s) 103, 263, 315, 431, 481
Bme1390I CCNGG 1 cut(s) 257
Bme18I GGWCC 3 cut(s) 167, 219, 253
BmgT120I GGNCC 4 cut(s) 167, 219, 253, 388
BmiI GGNNCC 3 cut(s) 11, 221, 320
BmrFI CCNGG 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 2 cut(s) 499, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 2 cut(s) 25, 211
Bse21I CCTNAGG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 257
BseDI CCNNGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 185, 461, 522
BseNI ACTGG 2 cut(s) 25, 211
BseXI GCAGC 5 cut(s) 88, 273, 325, 441, 491
BshFI GGCC 1 cut(s) 389
BshNI GGYRCC 1 cut(s) 318
BsiHKAI GWGCWC 1 cut(s) 280
BsiSI CCGG 3 cut(s) 500, 514, 526
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 221
BsnI GGCC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 280
Bsp143I GATC 2 cut(s) 355, 485
BspACI CCGC 3 cut(s) 51, 99, 316
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 3 cut(s) 184, 460, 521
BspLI GGNNCC 3 cut(s) 11, 221, 320
BspT107I GGYRCC 1 cut(s) 318
BsrI ACTGG 2 cut(s) 25, 211
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 2 cut(s) 355, 485
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 2 cut(s) 232, 425
Bst6I CTCTTC 1 cut(s) 455
BstBAI YACGTR 1 cut(s) 143
BstDEI CTNAG 3 cut(s) 171, 447, 508
BstKTI GATC 2 cut(s) 358, 488
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 2 cut(s) 355, 485
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 255
BstV1I GCAGC 5 cut(s) 88, 273, 325, 441, 491
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 389
BtsIMutI CAGTG 1 cut(s) 305
Cfr13I GGNCC 4 cut(s) 167, 219, 253, 388
Csp6I GTAC 1 cut(s) 18
CspCI CAANNNNNGTGG 2 cut(s) 281, 316
CviJI RGCY 9 cut(s) 210, 264, 278, 341, 369, 389, 432, 496, 517
CviKI_1 RGCY 9 cut(s) 210, 264, 278, 341, 369, 389, 432, 496, 517
CviQI GTAC 1 cut(s) 18
DdeI CTNAG 3 cut(s) 171, 447, 508
DpnI GATC 2 cut(s) 357, 487
DpnII GATC 2 cut(s) 355, 485
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Ecl136II GAGCTC 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 3 cut(s) 167, 219, 253
Eco53kI GAGCTC 1 cut(s) 278
Eco57I CTGAAG 2 cut(s) 281, 479
Eco81I CCTNAGG 1 cut(s) 171
EcoICRI GAGCTC 1 cut(s) 278
EcoO109I RGGNCCY 2 cut(s) 219, 388
EcoRII CCWGG 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 280
FaiI YATR 6 cut(s) 7, 69, 93, 158, 338, 360
Fnu4HI GCNGC 5 cut(s) 102, 262, 314, 430, 480
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 5 cut(s) 102, 262, 314, 430, 480
FspBI CTAG 1 cut(s) 323
GluI GCNGC 5 cut(s) 102, 262, 314, 430, 480
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 1 cut(s) 389
HapII CCGG 3 cut(s) 500, 514, 526
HinfI GANTC 3 cut(s) 26, 95, 399
HpaII CCGG 3 cut(s) 500, 514, 526
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 2 cut(s) 253, 450
Hpy188III TCNNGA 2 cut(s) 173, 489
Hpy8I GTNNAC 1 cut(s) 271
HpyAV CCTTC 2 cut(s) 379, 486
HpyCH4III ACNGT 2 cut(s) 232, 425
HpyCH4IV ACGT 3 cut(s) 142, 183, 520
HpyCH4V TGCA 4 cut(s) 114, 197, 395, 429
HpyF3I CTNAG 3 cut(s) 171, 447, 508
HpySE526I ACGT 3 cut(s) 142, 183, 520
Kzo9I GATC 2 cut(s) 355, 485
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 9 cut(s) 6, 158, 192, 242, 269, 379, 470, 513, 527
Lsp1109I GCAGC 5 cut(s) 88, 273, 325, 441, 491
MaeI CTAG 1 cut(s) 323
MaeII ACGT 3 cut(s) 142, 183, 520
MaeIII GTNAC 2 cut(s) 138, 288
MalI GATC 2 cut(s) 357, 487
MboI GATC 2 cut(s) 355, 485
MboII GAAGA 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 280
MlyI GAGTC 1 cut(s) 35
MmeI TCCRAC 2 cut(s) 194, 436
MnlI CCTC 6 cut(s) 143, 180, 181, 210, 452, 456
MseI TTAA 2 cut(s) 306, 332
MspA1I CMGCKG 2 cut(s) 101, 316
MspI CCGG 3 cut(s) 500, 514, 526
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
NdeII GATC 2 cut(s) 355, 485
NlaIV GGNNCC 3 cut(s) 11, 221, 320
NmuCI GTSAC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 95, 399
PkrI GCNGC 5 cut(s) 103, 263, 315, 431, 481
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
Ppu21I YACGTR 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 280
Psp1406I AACGTT 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 3 cut(s) 11, 221, 320
PspPI GGNCC 4 cut(s) 167, 219, 253, 388
PspPPI RGGWCCY 1 cut(s) 219
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SacI GAGCTC 1 cut(s) 280
SaqAI TTAA 2 cut(s) 306, 332
SatI GCNGC 5 cut(s) 102, 262, 314, 430, 480
Sau3AI GATC 2 cut(s) 355, 485
Sau96I GGNCC 4 cut(s) 167, 219, 253, 388
SchI GAGTC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 280
SinI GGWCC 3 cut(s) 167, 219, 253
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 3 cut(s) 51, 99, 316
SspMI CTAG 1 cut(s) 323
SstI GAGCTC 1 cut(s) 280
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 232, 425
TaiI ACGT 3 cut(s) 145, 186, 523
TaqI TCGA 2 cut(s) 57, 234
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 2 cut(s) 95, 399
Tru1I TTAA 2 cut(s) 306, 332
Tru9I TTAA 2 cut(s) 306, 332
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 5 cut(s) 101, 261, 313, 429, 479
Tsp45I GTSAC 1 cut(s) 138
TspGWI ACGGA 2 cut(s) 96, 288
TspRI CASTG 1 cut(s) 305
VpaK11BI GGWCC 3 cut(s) 167, 219, 253
XspI CTAG 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.