Rmu_co8175998.1_g000001

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8175998.1
Physical Location & Seq
Reverse (-)
6 .. 563
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8175998.1_g000001.1.cds

Sequence Viewer

Length: 558 bp
atgtccagcgtggtgggtacccttctaaatggggctctccactgggcagtccgtcgaggaatcaacatcagtccttctgacggcgatgaccatgacccgaggcctttcggcattgtgtcctttgatctgacagaggagacttacaaagaagtacccctgccgtgtgacggtgataagcatttctctttctatgggttgggggttttaggagggtgtctgagtatgctccacagcccccacgggtctgattatcaagtgtgggttatgaaggaatatggagtcaaggcttcttggagcgttttcacaaccatcccacaaaagatggaggatactaaggagtacatgggattgatgtcgcttttgtgcgttttgaagaacggcgaaattctaatgatgttgcacaaccacaaaaaggttgtgatatacaatcccggacagaggaaatttcgtaccatattcaatggggaaataggctcttcccaagtggcgttatacatcgagactctagtttccccaaaaatatatgcaccatcctcatcaccatggatctctaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

20.67

Weight (kDa)

6.64

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AclWI GGATC 1 cut(s) 554
AcsI RAATTY 2 cut(s) 384, 443
AfaI GTAC 4 cut(s) 19, 153, 341, 451
AfiI CCNNNNNNNGG 4 cut(s) 80, 167, 412, 438
AgsI TTSAA 2 cut(s) 373, 460
Alw26I GTCTC 2 cut(s) 131, 494
AlwI GGATC 1 cut(s) 554
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 1 cut(s) 101
ApoI RAATTY 2 cut(s) 384, 443
Asp718I GGTACC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 432
AsuHPI GGTGA 2 cut(s) 182, 531
AvaI CYCGRG 1 cut(s) 97
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 1 cut(s) 37
BccI CCATC 3 cut(s) 316, 317, 538
BceAI ACGGC 3 cut(s) 97, 145, 394
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 1 cut(s) 432
BcoDI GTCTC 2 cut(s) 131, 494
BfaI CTAG 2 cut(s) 506, 552
BfuI GTATCC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 97
BmiI GGNNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 432
BmrI ACTGGG 1 cut(s) 52
BmuI ACTGGG 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 432
BsaJI CCNNGG 3 cut(s) 98, 238, 542
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 167, 412, 438
Bse1I ACTGG 1 cut(s) 47
BseDI CCNNGG 3 cut(s) 98, 238, 542
BseGI GGATG 2 cut(s) 309, 530
BseLI CCNNNNNNNGG 4 cut(s) 80, 167, 412, 438
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 149
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 17
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 432
BslI CCNNNNNNNGG 4 cut(s) 80, 167, 412, 438
BsmAI GTCTC 2 cut(s) 131, 494
BsnI GGCC 1 cut(s) 103
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 2 cut(s) 124, 546
Bsp19I CCATGG 1 cut(s) 542
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 19
BspPI GGATC 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 481
BspT107I GGYRCC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 47
BssECI CCNNGG 3 cut(s) 98, 238, 542
BssMI GATC 2 cut(s) 124, 546
BssT1I CCWWGG 1 cut(s) 542
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 218, 333
BstDSI CCRYGG 2 cut(s) 238, 542
BstF5I GGATG 2 cut(s) 309, 530
BstKTI GATC 2 cut(s) 127, 549
BstMAI GTCTC 2 cut(s) 131, 494
BstMBI GATC 2 cut(s) 124, 546
BstSCI CCNGG 1 cut(s) 430
BstX2I RGATCY 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 13
BstYI RGATCY 1 cut(s) 546
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 2 cut(s) 238, 542
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 309, 530
BtsIMutI CAGTG 1 cut(s) 40
Csp6I GTAC 4 cut(s) 18, 152, 340, 450
CviAII CATG 3 cut(s) 92, 343, 543
CviJI RGCY 5 cut(s) 35, 103, 234, 287, 474
CviKI_1 RGCY 5 cut(s) 35, 103, 234, 287, 474
CviQI GTAC 4 cut(s) 18, 152, 340, 450
DdeI CTNAG 2 cut(s) 218, 333
DpnI GATC 2 cut(s) 126, 548
DpnII GATC 2 cut(s) 124, 546
Eam1104I CTCTTC 1 cut(s) 481
EarI CTCTTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 542
Eco147I AGGCCT 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 542
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 542
FaeI CATG 3 cut(s) 95, 346, 546
FatI CATG 3 cut(s) 91, 342, 542
FokI GGATG 2 cut(s) 296, 517
FriOI GRGCYC 1 cut(s) 37
FspBI CTAG 2 cut(s) 506, 552
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 432
Hin1II CATG 3 cut(s) 95, 346, 546
HinfI GANTC 3 cut(s) 60, 279, 502
HpaII CCGG 1 cut(s) 432
HphI GGTGA 2 cut(s) 182, 531
Hpy188I TCNGA 4 cut(s) 79, 129, 219, 247
Hpy188III TCNNGA 1 cut(s) 499
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 32, 84, 262
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 2 cut(s) 400, 527
HpyF3I CTNAG 2 cut(s) 218, 333
Hsp92II CATG 3 cut(s) 95, 346, 546
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 124, 546
LguI GCTCTTC 1 cut(s) 481
LmnI GCTCC 2 cut(s) 231, 294
LpnPI CCDG 4 cut(s) 19, 28, 170, 445
MaeI CTAG 2 cut(s) 506, 552
MaeIII GTNAC 1 cut(s) 164
MalI GATC 2 cut(s) 126, 548
MboI GATC 2 cut(s) 124, 546
MboII GAAGA 2 cut(s) 385, 468
MflI RGATCY 1 cut(s) 546
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 384, 443
MlyI GAGTC 2 cut(s) 288, 496
MnlI CCTC 7 cut(s) 50, 93, 127, 203, 319, 432, 544
MslI CAYNNNNRTG 1 cut(s) 541
MspI CCGG 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 432
NciI CCSGG 1 cut(s) 432
NcoI CCATGG 1 cut(s) 542
NdeII GATC 2 cut(s) 124, 546
NlaIII CATG 3 cut(s) 95, 346, 546
NlaIV GGNNCC 1 cut(s) 19
NmuCI GTSAC 1 cut(s) 164
PceI AGGCCT 1 cut(s) 103
PciSI GCTCTTC 1 cut(s) 481
PfeI GAWTC 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 430
PleI GAGTC 2 cut(s) 287, 496
PpsI GAGTC 2 cut(s) 287, 496
PspN4I GGNNCC 1 cut(s) 19
PsuI RGATCY 1 cut(s) 546
RsaI GTAC 4 cut(s) 19, 153, 341, 451
RsaNI GTAC 4 cut(s) 18, 152, 340, 450
RseI CAYNNNNRTG 1 cut(s) 541
SapI GCTCTTC 1 cut(s) 481
Sau3AI GATC 2 cut(s) 124, 546
SchI GAGTC 2 cut(s) 288, 496
ScrFI CCNGG 1 cut(s) 432
SduI GDGCHC 1 cut(s) 37
SetI ASST 2 cut(s) 417, 557
SmiMI CAYNNNNRTG 1 cut(s) 541
Sse9I AATT 2 cut(s) 384, 443
SseBI AGGCCT 1 cut(s) 103
SspMI CTAG 2 cut(s) 506, 552
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 430
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 2 cut(s) 55, 498
TasI AATT 2 cut(s) 384, 443
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 60
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 47
XapI RAATTY 2 cut(s) 384, 443
XspI CTAG 2 cut(s) 506, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.