Rorug05G0332900

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
40273310 .. 40273927
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0332900.1

Sequence Viewer

Length: 618 bp
ATGGCATCTACACTCAAATTCATCTCACTACTAATTTCTACATTCGCCATAATTCAAATGGCATTGGCTGACCCGGATATTATTTCGGATTTCATTAAACCTACTCCAAATGCAACAGTAAATGCAAACTACTTCACATTCACCGGCATGCGTGCTCTTGTTGGAGGAACCCCTCCCACAACCTTCACCGTATTGAAGGCAACCTTGGCAGAGTTCCCTGCTCTTTTCGGGCAGAGTGTTTCATATGCTGTCCTTCAATTCCCATCTGGTACAGTTAACCCACTACACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTCGTTGATGGCACCCTTGAAGTGGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAAACTATTCAAGCCGGTGACCTGTTTGTGTTTCCCAAGGGACTTGTGCACTACCAGTACAATGCTGATGCACAAAACCCGGCTCTAGCCATTTCGGCCTTTGGAAGCGCCAGTGCTGGAACTGTATCAGTTCCTCCCACTTTGTTCACCACTAATATTGATGATAATGTCCTTGCTTTGTCACTGAAGACTGATGTAGCCACCGTTCGGAAACTCAAAGCTGGACTTGCTCCGAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

205

Amino Acids

21.77

Weight (kDa)

6.25

Isoelectric Point (pI)

20.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 66 - 194 9.6e-29 Cupin
Cupin_2 PF07883 85 - 157 1.8e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 351
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 2 cut(s) 271, 434
AfiI CCNNNNNNNGG 2 cut(s) 340, 582
AgsI TTSAA 5 cut(s) 56, 196, 257, 338, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 310, 596
AluI AGCT 2 cut(s) 310, 596
Alw21I GWGCWC 3 cut(s) 157, 312, 426
Alw44I GTGCAC 1 cut(s) 422
AoxI GGCC 1 cut(s) 471
ApaLI GTGCAC 1 cut(s) 422
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 485
AsuC2I CCSGG 2 cut(s) 74, 455
AsuHPI GGTGA 4 cut(s) 133, 178, 404, 514
BaeGI GKGCMC 1 cut(s) 426
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 569
Bbv12I GWGCWC 3 cut(s) 157, 312, 426
BccI CCATC 2 cut(s) 271, 320
BcnI CCSGG 2 cut(s) 74, 455
BfaI CTAG 1 cut(s) 461
BfoI RGCGCY 1 cut(s) 486
BglI GCCNNNNNGGC 1 cut(s) 470
BlpI GCTNAGC 1 cut(s) 306
Bme1390I CCNGG 2 cut(s) 74, 455
BmiI GGNNCC 2 cut(s) 169, 331
BmrFI CCNGG 2 cut(s) 74, 455
BmsI GCATC 2 cut(s) 14, 433
BpiI GAAGAC 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 306
BpuMI CCSGG 2 cut(s) 74, 455
BsaJI CCNNGG 2 cut(s) 204, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 340, 582
Bse118I RCCGGY 2 cut(s) 143, 389
Bse1I ACTGG 2 cut(s) 430, 486
BseDI CCNNGG 2 cut(s) 204, 411
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 340, 582
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 2 cut(s) 430, 486
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 1 cut(s) 426
BshFI GGCC 1 cut(s) 473
BshNI GGYRCC 1 cut(s) 329
BsiHKAI GWGCWC 3 cut(s) 157, 312, 426
BsiSI CCGG 4 cut(s) 74, 144, 390, 455
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 2 cut(s) 340, 582
BsmFI GGGAC 1 cut(s) 429
BsnI GGCC 1 cut(s) 473
Bsp1286I GDGCHC 3 cut(s) 157, 312, 426
Bsp1720I GCTNAGC 1 cut(s) 306
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 1 cut(s) 298
BspLI GGNNCC 2 cut(s) 169, 331
BspT107I GGYRCC 1 cut(s) 329
BsrFI RCCGGY 2 cut(s) 143, 389
BsrI ACTGG 2 cut(s) 430, 486
BssAI RCCGGY 2 cut(s) 143, 389
BssECI CCNNGG 2 cut(s) 204, 411
BssT1I CCWWGG 2 cut(s) 204, 411
Bst4CI ACNGT 5 cut(s) 118, 190, 274, 499, 580
Bst6I CTCTTC 1 cut(s) 320
BstC8I GCNNGC 2 cut(s) 149, 153
BstDEI CTNAG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 392
BstF5I GGATG 1 cut(s) 292
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 1 cut(s) 485
BstMWI GCNNNNNNNGC 3 cut(s) 206, 470, 602
BstNSI RCATGY 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 392
BstSCI CCNGG 2 cut(s) 72, 453
BstSLI GKGCMC 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 569
BsuRI GGCC 1 cut(s) 473
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 493, 557
Cac8I GCNNGC 2 cut(s) 149, 153
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 2 cut(s) 143, 389
Csp6I GTAC 2 cut(s) 270, 433
CspCI CAANNNNNGTGG 2 cut(s) 514, 549
CviAII CATG 2 cut(s) 148, 615
CviQI GTAC 2 cut(s) 270, 433
DdeI CTNAG 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 320
EarI CTCTTC 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 310
Eco130I CCWWGG 2 cut(s) 204, 411
Eco24I GRGCYC 1 cut(s) 312
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 1 cut(s) 581
Eco91I GGTNACC 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 310
EcoO65I GGTNACC 1 cut(s) 392
EcoT14I CCWWGG 2 cut(s) 204, 411
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 2 cut(s) 204, 411
FaeI CATG 2 cut(s) 151, 618
FaiI YATR 5 cut(s) 50, 149, 244, 246, 616
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 585, 617
FaqI GGGAC 1 cut(s) 429
FatI CATG 2 cut(s) 147, 614
FauNDI CATATG 1 cut(s) 244
FblI GTMKAC 1 cut(s) 351
FokI GGATG 1 cut(s) 279
FriOI GRGCYC 1 cut(s) 312
FspBI CTAG 1 cut(s) 461
GlaI GCGC 1 cut(s) 484
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 1 cut(s) 473
HapII CCGG 4 cut(s) 74, 144, 390, 455
HhaI GCGC 1 cut(s) 485
Hin1II CATG 2 cut(s) 151, 618
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HincII GTYRAC 2 cut(s) 277, 352
HindII GTYRAC 2 cut(s) 277, 352
HpaI GTTAAC 1 cut(s) 277
HpaII CCGG 4 cut(s) 74, 144, 390, 455
HphI GGTGA 4 cut(s) 133, 178, 404, 514
Hpy166II GTNNAC 4 cut(s) 277, 352, 424, 522
Hpy188I TCNGA 3 cut(s) 88, 585, 609
Hpy8I GTNNAC 4 cut(s) 277, 352, 424, 522
HpyAV CCTTC 3 cut(s) 190, 193, 263
HpyCH4III ACNGT 5 cut(s) 118, 190, 274, 499, 580
HpyCH4V TGCA 4 cut(s) 113, 125, 424, 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 470, 602
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 2 cut(s) 151, 618
HspAI GCGC 1 cut(s) 483
KspAI GTTAAC 1 cut(s) 277
LmnI GCTCC 2 cut(s) 315, 610
LweI GCATC 2 cut(s) 14, 433
MaeI CTAG 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 392, 555
MboII GAAGA 2 cut(s) 307, 574
MhlI GDGCHC 3 cut(s) 157, 312, 426
MluCI AATT 4 cut(s) 17, 33, 51, 257
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 7 cut(s) 158, 183, 306, 323, 329, 377, 519
MseI TTAA 2 cut(s) 96, 276
MslI CAYNNNNRTG 1 cut(s) 146
MspI CCGG 4 cut(s) 74, 144, 390, 455
MspR9I CCNGG 2 cut(s) 74, 455
MwoI GCNNNNNNNGC 3 cut(s) 206, 470, 602
NciI CCSGG 2 cut(s) 74, 455
NdeI CATATG 1 cut(s) 244
NlaIII CATG 2 cut(s) 151, 618
NlaIV GGNNCC 2 cut(s) 169, 331
NmuCI GTSAC 2 cut(s) 392, 555
NspI RCATGY 1 cut(s) 151
PaeI GCATGC 1 cut(s) 151
Psp124BI GAGCTC 1 cut(s) 312
PspEI GGTNACC 1 cut(s) 392
PspN4I GGNNCC 2 cut(s) 169, 331
PsrI GAACNNNNNNTAC 2 cut(s) 564, 596
RsaI GTAC 2 cut(s) 271, 434
RsaNI GTAC 2 cut(s) 270, 433
RseI CAYNNNNRTG 1 cut(s) 146
SacI GAGCTC 1 cut(s) 312
SalI GTCGAC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 96, 276
ScrFI CCNGG 2 cut(s) 74, 455
SduI GDGCHC 3 cut(s) 157, 312, 426
SetI ASST 7 cut(s) 103, 185, 206, 312, 369, 399, 598
SfaNI GCATC 2 cut(s) 14, 433
SmiMI CAYNNNNRTG 1 cut(s) 146
SphI GCATGC 1 cut(s) 151
Sse9I AATT 4 cut(s) 17, 33, 51, 257
SspI AATATT 1 cut(s) 532
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 1 cut(s) 312
StyD4I CCNGG 2 cut(s) 72, 453
StyI CCWWGG 2 cut(s) 204, 411
TaaI ACNGT 5 cut(s) 118, 190, 274, 499, 580
TaqI TCGA 1 cut(s) 351
TasI AATT 4 cut(s) 17, 33, 51, 257
TatI WGTACW 1 cut(s) 432
Tru1I TTAA 2 cut(s) 96, 276
Tru9I TTAA 2 cut(s) 96, 276
TscAI CASTG 2 cut(s) 493, 564
TseFI GTSAC 2 cut(s) 392, 555
Tsp45I GTSAC 2 cut(s) 392, 555
TspDTI ATGAA 3 cut(s) 10, 82, 231
TspRI CASTG 2 cut(s) 493, 564
VneI GTGCAC 1 cut(s) 422
XapI RAATTY 1 cut(s) 17
XceI RCATGY 1 cut(s) 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.