RchiOBHm_Chr2g0154681

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000113
Physical Location & Seq
Reverse (-)
71771384 .. 71773829
2446 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52366

Sequence Viewer

Length: 573 bp
ATGTCGGACGCTCTCTTCAGTCGACAGCAGCAACAACTGGTTCTCTCCGGTACCGGACCTAGCTCCGAGTATCTTGATTTCGGTTCTGTCATCGTCGAAATCCTCTCATGGCTACCCGCCAAATCATTACTCCGCTTCCGGTGCGTATGCAAACCATGGCGGGCCTTGTTCTGCGATCCTTATTTCATCAGTAGACACCTCAGCCGCATCAACACCAAAACAATCAACAGCTACTCTCTCTTTGTTAAGGAGATCTCCACTTTCCGATCAATGGACTGTGAAGCATTATTCAAGTATTCAAGCCATGATGATGGTCCTGTTCTGAGCAGAGAGCTTCATTTTCCGATACTTGATCCGCCATTTGAATTTTACTATATAGATATCATTGGTTCATGCAATGGCTTGATATGCCTACTACTTGATTGGAATACTTCAGTTATTATGTTATGGAATCCTTGCACAAGAGAATCCAAGGTGTTACCGCAACCTTCTATTAAGAACCTCCCAAAGTTTTATGGATTCGGTTATGATTCCACAACCGATGATTACAAGGTGTTTGTGAAGCTACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

190

Amino Acids

21.95

Weight (kDa)

6.88

Isoelectric Point (pI)

51.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 63 1e-08 F-box domain
F-box-like PF12937 30 - 66 1.7e-07 F-box-like
FBA_3 PF08268 108 - 186 1e-09 F-box associated beta propeller domain
FBA_1 PF07734 123 - 187 4.7e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 2 cut(s) 22, 193
AciI CCGC 6 cut(s) 117, 133, 160, 205, 356, 482
AclWI GGATC 2 cut(s) 170, 347
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 417
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 3 cut(s) 292, 300, 365
AluBI AGCT 4 cut(s) 63, 231, 334, 565
AluI AGCT 4 cut(s) 63, 231, 334, 565
AlwI GGATC 2 cut(s) 170, 347
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 28
ApoI RAATTY 1 cut(s) 365
Asp718I GGTACC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 56, 162, 314
AvaII GGWCC 2 cut(s) 56, 314
BanI GGYRCC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 305
BfaI CTAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 252
BisI GCNGC 2 cut(s) 29, 205
BlsI GCNGC 2 cut(s) 30, 206
Bme18I GGWCC 2 cut(s) 56, 314
BmgT120I GGNCC 3 cut(s) 56, 162, 314
BmiI GGNNCC 1 cut(s) 52
BmsI GCATC 1 cut(s) 216
Bpu10I CCTNAGC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 155, 471
BsaWI WCCGGW 3 cut(s) 47, 53, 138
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 403
BseDI CCNNGG 2 cut(s) 155, 471
BseLI CCNNNNNNNGG 1 cut(s) 271
BseMI GCAATG 1 cut(s) 403
BseMII CTCAG 2 cut(s) 214, 314
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 3 cut(s) 48, 54, 139
BslI CCNNNNNNNGG 1 cut(s) 271
BsnI GGCC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 175, 252, 266, 352
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 6 cut(s) 117, 133, 160, 205, 356, 482
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 2 cut(s) 213, 315
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 2 cut(s) 170, 347
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 155, 471
BssMI GATC 4 cut(s) 175, 252, 266, 352
BssT1I CCWWGG 2 cut(s) 155, 471
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 200, 323
BstDSI CCRYGG 1 cut(s) 155
BstKTI GATC 4 cut(s) 178, 255, 269, 355
BstMBI GATC 4 cut(s) 175, 252, 266, 352
BstMWI GCNNNNNNNGC 2 cut(s) 141, 408
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 1 cut(s) 252
BstXI CCANNNNNNTGG 1 cut(s) 311
BstYI RGATCY 1 cut(s) 252
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 162
Cfr13I GGNCC 3 cut(s) 56, 162, 314
CseI GACGC 1 cut(s) 17
Csp6I GTAC 1 cut(s) 51
CviAII CATG 4 cut(s) 108, 156, 305, 393
CviJI RGCY 9 cut(s) 63, 112, 164, 204, 231, 303, 334, 402, 565
CviKI_1 RGCY 9 cut(s) 63, 112, 164, 204, 231, 303, 334, 402, 565
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 2 cut(s) 200, 323
DpnI GATC 4 cut(s) 177, 254, 268, 354
DpnII GATC 4 cut(s) 175, 252, 266, 352
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
EciI GGCGGA 1 cut(s) 345
Eco130I CCWWGG 2 cut(s) 155, 471
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 2 cut(s) 56, 314
Eco57I CTGAAG 1 cut(s) 417
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 2 cut(s) 155, 471
ErhI CCWWGG 2 cut(s) 155, 471
FaeI CATG 4 cut(s) 111, 159, 308, 396
FatI CATG 4 cut(s) 107, 155, 304, 392
FauI CCCGC 2 cut(s) 124, 153
FblI GTMKAC 2 cut(s) 22, 193
Fnu4HI GCNGC 2 cut(s) 29, 205
Fsp4HI GCNGC 2 cut(s) 29, 205
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 29, 205
HaeIII GGCC 1 cut(s) 164
HapII CCGG 3 cut(s) 48, 54, 139
HgaI GACGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 111, 159, 308, 396
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 4 cut(s) 451, 467, 519, 530
HpaII CCGG 3 cut(s) 48, 54, 139
Hpy166II GTNNAC 2 cut(s) 23, 194
Hpy188I TCNGA 5 cut(s) 7, 67, 266, 324, 345
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 2 cut(s) 23, 194
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 498
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 150, 396, 459
HpyF10VI GCNNNNNNNGC 2 cut(s) 141, 408
HpyF3I CTNAG 2 cut(s) 200, 323
Hsp92II CATG 4 cut(s) 111, 159, 308, 396
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 4 cut(s) 175, 252, 266, 352
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 5 cut(s) 23, 61, 67, 152, 330
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 477
MalI GATC 4 cut(s) 177, 254, 268, 354
MboI GATC 4 cut(s) 175, 252, 266, 352
MboII GAAGA 1 cut(s) 7
MflI RGATCY 1 cut(s) 252
MluCI AATT 1 cut(s) 365
MnlI CCTC 3 cut(s) 113, 209, 512
MseI TTAA 2 cut(s) 246, 495
MslI CAYNNNNRTG 1 cut(s) 309
MspI CCGG 3 cut(s) 48, 54, 139
MwoI GCNNNNNNNGC 2 cut(s) 141, 408
NcoI CCATGG 1 cut(s) 155
NdeII GATC 4 cut(s) 175, 252, 266, 352
NlaIII CATG 4 cut(s) 111, 159, 308, 396
NlaIV GGNNCC 1 cut(s) 52
PfeI GAWTC 4 cut(s) 451, 467, 519, 530
PkrI GCNGC 2 cut(s) 30, 206
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 3 cut(s) 56, 162, 314
PsuI RGATCY 1 cut(s) 252
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 309
SalI GTCGAC 1 cut(s) 21
SaqAI TTAA 2 cut(s) 246, 495
SatI GCNGC 2 cut(s) 29, 205
Sau3AI GATC 4 cut(s) 175, 252, 266, 352
Sau96I GGNCC 3 cut(s) 56, 162, 314
SfaNI GCATC 1 cut(s) 216
SinI GGWCC 2 cut(s) 56, 314
SmiMI CAYNNNNRTG 1 cut(s) 309
Sse9I AATT 1 cut(s) 365
SsiI CCGC 6 cut(s) 117, 133, 160, 205, 356, 482
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 155, 471
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 22, 96
TasI AATT 1 cut(s) 365
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 4 cut(s) 451, 467, 519, 530
Tru1I TTAA 2 cut(s) 246, 495
Tru9I TTAA 2 cut(s) 246, 495
TseI GCWGC 1 cut(s) 28
TspDTI ATGAA 3 cut(s) 175, 326, 381
VpaK11BI GGWCC 2 cut(s) 56, 314
XapI RAATTY 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 22, 193
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.