Rmu_sc0000864.1_g000004

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000864.1
OG0000113
Physical Location & Seq
Reverse (-)
13773 .. 14888
1116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000864.1_g000004.1.cds

Sequence Viewer

Length: 1116 bp
atggcggaggacggcggcgtagctcacaccgagttcgacgacggcgaaatcatttcagagattctggcgaggctaccggtcaaatctgtgatgcgattccggtgcgtttccaagtcgtggaacactctgatctccgatccttacttcgctaagaagcatttcaggtacgcagaaatgggcatcaccgagaacagttccaggctcctttattcaatggaccctccacaatccctagaccacgaagcattgaaggatttgaaggatcacagggatggttattttgccaacagagagcttgatctgccggtaatgatcccggagttttccaatcgttataaaagtattgttggttgttgcaatggcttaatatgtttttccgtccaaggggacgactttatcttgtggaatccatgcactagatactccaagctgttaccgagaactccattgcctgttttcaatcggcacgctttttgtgggtttggttatgattctgctaatgatgattacaaggtattagtggggactaaaatgtgcgaagaaattaccattcaggttttctctgtaaaaacgagttcatggaaggtgctccccattaccaatgctcttagcatctcaggtcggggcttctttttgaatggagctttgcactggttaacgagggttgagccaaatcgagggaatagccgaacaattttgtcttttgatttggcggaggagaagtttcatgagatgataccattaccctatgatgatgatgatggctttgatggtatgacgattcttagaaattgtctttgtgtgtttaatttcttagttgggcgggctggtgttagcacaatatggttgatgaaggaatatggggtgaagcaatcttggactcaagttattaggtgttctaaaagggaaattcctaaagagtacagactcctgttcttgcagcctatttgtattctagagaatggagaacttgtagttaataattttcgtgcaggtttcttggtgttatatgatccaaaggaaaatacattcaagaatgttaccaagactcataatgaattgaattgtggagctttagtttacagagagactttagtttcaccagtaagtcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

371

Amino Acids

42.42

Weight (kDa)

6.27

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 983
AccB7I CCANNNNNTGG 1 cut(s) 117
AciI CCGC 4 cut(s) 5, 15, 713, 823
AclWI GGATC 4 cut(s) 131, 270, 307, 1007
AcsI RAATTY 1 cut(s) 909
AfaI GTAC 2 cut(s) 167, 923
AfiI CCNNNNNNNGG 3 cut(s) 117, 384, 677
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 7 cut(s) 213, 250, 259, 460, 637, 1033, 1063
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 5 cut(s) 23, 295, 430, 644, 1073
AluI AGCT 5 cut(s) 23, 295, 430, 644, 1073
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 1082
AlwI GGATC 4 cut(s) 131, 270, 307, 1007
ApeKI GCWGC 1 cut(s) 940
ApoI RAATTY 1 cut(s) 909
AsiGI ACCGGT 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 175, 877, 1092
AvaII GGWCC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 591
BbvI GCAGC 1 cut(s) 952
BccI CCATC 3 cut(s) 266, 755, 764
BceAI ACGGC 2 cut(s) 28, 58
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 1082
BfaI CTAG 3 cut(s) 233, 417, 956
BfuAI ACCTGC 1 cut(s) 983
BisI GCNGC 2 cut(s) 16, 941
BlsI GCNGC 2 cut(s) 17, 942
Bme1390I CCNGG 2 cut(s) 199, 317
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 203, 219
BmrFI CCNGG 2 cut(s) 199, 317
BmsI GCATC 3 cut(s) 81, 189, 621
BpuEI CTTGAG 1 cut(s) 867
BpuMI CCSGG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 382
BsaWI WCCGGW 2 cut(s) 76, 99
BsaXI ACNNNNNCTCC 6 cut(s) 707, 737, 957, 987, 1062, 1092
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 384, 677
Bse118I RCCGGY 2 cut(s) 76, 304
Bse1I ACTGG 2 cut(s) 656, 1103
Bse3DI GCAATG 2 cut(s) 364, 446
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 117, 384, 677
BseMI GCAATG 2 cut(s) 364, 446
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 2 cut(s) 656, 1103
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 1 cut(s) 952
BsgI GTGCAG 1 cut(s) 1011
BshTI ACCGGT 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 4 cut(s) 77, 100, 305, 317
BslFI GGGAC 2 cut(s) 401, 538
BslI CCNNNNNNNGG 3 cut(s) 117, 384, 677
BsmAI GTCTC 1 cut(s) 1082
BsmFI GGGAC 2 cut(s) 401, 538
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
BspACI CCGC 4 cut(s) 5, 15, 713, 823
BspCNI CTCAG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 727
BspLI GGNNCC 2 cut(s) 203, 219
BspMI ACCTGC 1 cut(s) 983
BspPI GGATC 4 cut(s) 131, 270, 307, 1007
BsrDI GCAATG 2 cut(s) 364, 446
BsrFI RCCGGY 2 cut(s) 76, 304
BsrI ACTGG 2 cut(s) 656, 1103
BssAI RCCGGY 2 cut(s) 76, 304
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
BssT1I CCWWGG 1 cut(s) 382
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 2 cut(s) 468, 825
BstDEI CTNAG 5 cut(s) 150, 608, 616, 785, 814
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 6 cut(s) 132, 139, 265, 301, 315, 1015
BstMAI GTCTC 1 cut(s) 1082
BstMBI GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 197, 315
BstV1I GCAGC 1 cut(s) 952
BtsCI GGATG 1 cut(s) 277
BtsIMutI CAGTG 1 cut(s) 649
BveI ACCTGC 1 cut(s) 983
Cac8I GCNNGC 2 cut(s) 468, 825
CciI TCATGA 1 cut(s) 727
Cfr10I RCCGGY 2 cut(s) 76, 304
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 166, 922
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 3 cut(s) 411, 579, 728
CviQI GTAC 2 cut(s) 166, 922
DdeI CTNAG 5 cut(s) 150, 608, 616, 785, 814
DpnI GATC 6 cut(s) 131, 138, 264, 300, 314, 1014
DpnII GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
EciI GGCGGA 2 cut(s) 20, 728
Eco130I CCWWGG 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 382
ErhI CCWWGG 1 cut(s) 382
FaeI CATG 3 cut(s) 414, 582, 731
FaqI GGGAC 2 cut(s) 401, 538
FatI CATG 3 cut(s) 410, 578, 727
FauI CCCGC 1 cut(s) 816
Fnu4HI GCNGC 2 cut(s) 16, 941
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 16, 941
FspBI CTAG 3 cut(s) 233, 417, 956
GluI GCNGC 2 cut(s) 16, 941
HapII CCGG 4 cut(s) 77, 100, 305, 317
Hin1II CATG 3 cut(s) 414, 582, 731
HincII GTYRAC 1 cut(s) 657
HindII GTYRAC 1 cut(s) 657
HinfI GANTC 8 cut(s) 61, 96, 406, 491, 781, 880, 927, 1048
HpaI GTTAAC 1 cut(s) 657
HpaII CCGG 4 cut(s) 77, 100, 305, 317
HphI GGTGA 3 cut(s) 175, 877, 1092
Hpy166II GTNNAC 2 cut(s) 657, 1081
Hpy188I TCNGA 3 cut(s) 58, 129, 136
Hpy188III TCNNGA 3 cut(s) 728, 956, 1033
Hpy8I GTNNAC 2 cut(s) 657, 1081
Hpy99I CGWCG 2 cut(s) 41, 44
HpyAV CCTTC 4 cut(s) 244, 253, 577, 847
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 5 cut(s) 357, 414, 649, 940, 992
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 5 cut(s) 150, 608, 616, 785, 814
Hsp92II CATG 3 cut(s) 414, 582, 731
KspAI GTTAAC 1 cut(s) 657
Kzo9I GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
LmnI GCTCC 4 cut(s) 207, 594, 641, 1070
Lsp1109I GCAGC 1 cut(s) 952
LweI GCATC 3 cut(s) 81, 189, 621
MaeI CTAG 3 cut(s) 233, 417, 956
MaeIII GTNAC 2 cut(s) 432, 1039
MalI GATC 6 cut(s) 131, 138, 264, 300, 314, 1014
MboI GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
MboII GAAGA 1 cut(s) 551
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 8 cut(s) 543, 693, 790, 808, 909, 982, 1058, 1063
MlyI GAGTC 3 cut(s) 874, 921, 1042
MnlI CCTC 5 cut(s) 63, 231, 654, 671, 709
MroXI GAANNNNTTC 1 cut(s) 158
MseI TTAA 4 cut(s) 365, 656, 807, 978
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 4 cut(s) 77, 100, 305, 317
MspR9I CCNGG 2 cut(s) 199, 317
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 317
NdeII GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
NlaIII CATG 3 cut(s) 414, 582, 731
NlaIV GGNNCC 2 cut(s) 203, 219
PagI TCATGA 1 cut(s) 727
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 5 cut(s) 61, 96, 406, 491, 781
PflMI CCANNNNNTGG 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 315
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 2 cut(s) 17, 942
PleI GAGTC 3 cut(s) 874, 921, 1042
PpsI GAGTC 3 cut(s) 874, 921, 1042
PsiI TTATAA 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 203, 219
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 2 cut(s) 167, 923
RsaNI GTAC 2 cut(s) 166, 922
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 4 cut(s) 365, 656, 807, 978
SatI GCNGC 2 cut(s) 16, 941
Sau3AI GATC 6 cut(s) 129, 136, 262, 298, 312, 1012
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 3 cut(s) 874, 921, 1042
ScrFI CCNGG 2 cut(s) 199, 317
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 3 cut(s) 81, 189, 621
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 882
SmoI CTYRAG 1 cut(s) 882
Sse9I AATT 8 cut(s) 543, 693, 790, 808, 909, 982, 1058, 1063
SsiI CCGC 4 cut(s) 5, 15, 713, 823
SspMI CTAG 3 cut(s) 233, 417, 956
StyD4I CCNGG 2 cut(s) 197, 315
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 2 cut(s) 36, 676
TasI AATT 8 cut(s) 543, 693, 790, 808, 909, 982, 1058, 1063
TatI WGTACW 1 cut(s) 921
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 5 cut(s) 61, 96, 406, 491, 781
Tru1I TTAA 4 cut(s) 365, 656, 807, 978
Tru9I TTAA 4 cut(s) 365, 656, 807, 978
TscAI CASTG 1 cut(s) 656
TseI GCWGC 1 cut(s) 940
TspDTI ATGAA 4 cut(s) 567, 716, 866, 1071
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 1 cut(s) 656
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 909
XbaI TCTAGA 1 cut(s) 955
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 3 cut(s) 233, 417, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.