Rroxscaffold_2G00083690

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000113
Physical Location & Seq
Reverse (-)
6353095 .. 6356824
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083690.1

Sequence Viewer

Length: 813 bp
ATGATTATGCCGAATTTTGGGGTAAAGGGTGCTTATTCAATGGAGCTCTACATTGGCTTGTGCCTACTCATCAAGGATCAAGAATTATGTCCTTTTTTTGTGGCGGAGGAGAAGTTTGAGGAGACGGTTCCGTTACTGGATGATTGTCGTGTTTTTCATGGTGTATTGGTATATAAAGATCATCTGTGTGTATATCAGATCTTAGATGGCATCCCTGCTGTTTTATCAGTATGGTTGATGGAGGAATATGGGGCCAAGGAATCCTGGACTCAAGTTATAAAGTTTTCTTTCAAGGAATTACGTGGAGAGGAGTTGAAGCCCCTGTGCATTTTGCAGAATGGTGAAATTTTGATGCATAGGGTTATGTCTGATGATCCTTTTGCATTTAATGATCCTGATGTGTTTCATGAGGATCTTGATGAGTTGTATAATGAACAACTTATGCAGGATGATCCTGATGTGTTTGATGATGATCCTGGTGTGTTTGATGAGGATCTTGATGAGTTGTATTATGAACAACTTTTGCAGGATGATCCTGATGTGTTTGATGATGATCCTGGTGTGTTTGATGAGGATCTTGATGAGTTGTATTATGAACAACTTTTGCAGGATGATCCTGATGTGTTTGATGATGATCCTGGTGTGTCTGATGAAGATCTTGATACGTTGTATAATCAACAGTGTATGTGGAATGCAGAAAGCCTATTGGTATTAACTAATCAAAAGACCTCAAAGGCTGTTTTTGAAGTTGACTTGGGTTTTGGAGCTGCCACTTACAGGCAGACTTTAGTTTCACCGGTAACAGGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

270

Amino Acids

31.12

Weight (kDa)

4.05

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AciI CCGC 1 cut(s) 104
AcsI RAATTY 2 cut(s) 13, 345
AfiI CCNNNNNNNGG 3 cut(s) 17, 777, 803
AgeI ACCGGT 1 cut(s) 796
AgsI TTSAA 4 cut(s) 39, 292, 316, 746
AjnI CCWGG 4 cut(s) 263, 475, 556, 637
AluBI AGCT 2 cut(s) 46, 767
AluI AGCT 2 cut(s) 46, 767
Alw21I GWGCWC 1 cut(s) 48
Alw26I GTCTC 1 cut(s) 116
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 767
ApoI RAATTY 2 cut(s) 13, 345
ArsI GACNNNNNNTTYG 2 cut(s) 743, 775
AsiGI ACCGGT 1 cut(s) 796
AspS9I GGNCC 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 353, 786
BanII GRGCYC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 754
BccI CCATC 2 cut(s) 200, 232
BciT130I CCWGG 4 cut(s) 265, 477, 558, 639
BcoDI GTCTC 1 cut(s) 116
BglII AGATCT 2 cut(s) 198, 655
BisI GCNGC 1 cut(s) 768
BlsI GCNGC 1 cut(s) 769
Bme1390I CCNGG 4 cut(s) 265, 477, 558, 639
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 2 cut(s) 129, 253
BmrFI CCNGG 4 cut(s) 265, 477, 558, 639
BmsI GCATC 2 cut(s) 219, 342
BpuEI CTTGAG 1 cut(s) 255
BsaAI YACGTR 1 cut(s) 302
BsaBI GATNNNNATC 6 cut(s) 471, 492, 552, 573, 633, 654
BsaJI CCNNGG 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 796
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 777, 803
Bse118I RCCGGY 1 cut(s) 796
Bse1I ACTGG 1 cut(s) 141
Bse8I GATNNNNATC 6 cut(s) 471, 492, 552, 573, 633, 654
BseBI CCWGG 4 cut(s) 265, 477, 558, 639
BseDI CCNNGG 1 cut(s) 255
BseGI GGATG 5 cut(s) 145, 210, 454, 535, 616
BseJI GATNNNNATC 6 cut(s) 471, 492, 552, 573, 633, 654
BseLI CCNNNNNNNGG 3 cut(s) 17, 777, 803
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 3 cut(s) 122, 134, 323
BseXI GCAGC 1 cut(s) 754
BshFI GGCC 1 cut(s) 254
BshTI ACCGGT 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 797
BslI CCNNNNNNNGG 3 cut(s) 17, 777, 803
BsmAI GTCTC 1 cut(s) 116
BsmBI CGTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 48
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 254
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 129, 253
BsrFI RCCGGY 1 cut(s) 796
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 796
BssECI CCNNGG 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 255
Bst2UI CCWGG 4 cut(s) 265, 477, 558, 639
Bst4CI ACNGT 2 cut(s) 127, 681
BstBAI YACGTR 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 5 cut(s) 145, 210, 454, 535, 616
BstMAI GTCTC 1 cut(s) 116
BstNI CCWGG 4 cut(s) 265, 477, 558, 639
BstSCI CCNGG 4 cut(s) 263, 475, 556, 637
BstV1I GCAGC 1 cut(s) 754
BstX2I RGATCY 5 cut(s) 198, 412, 493, 574, 655
BstYI RGATCY 5 cut(s) 198, 412, 493, 574, 655
BsuRI GGCC 1 cut(s) 254
BtsCI GGATG 5 cut(s) 145, 210, 454, 535, 616
BtsIMutI CAGTG 1 cut(s) 686
CciI TCATGA 1 cut(s) 406
Cfr10I RCCGGY 1 cut(s) 796
Cfr13I GGNCC 1 cut(s) 252
CspAI ACCGGT 1 cut(s) 796
CviAII CATG 2 cut(s) 158, 407
CviJI RGCY 7 cut(s) 46, 57, 254, 319, 702, 737, 767
CviKI_1 RGCY 7 cut(s) 46, 57, 254, 319, 702, 737, 767
DdeI CTNAG 1 cut(s) 202
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 255
Eco24I GRGCYC 1 cut(s) 48
Eco53kI GAGCTC 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 46
EcoRII CCWGG 4 cut(s) 263, 475, 556, 637
EcoT14I CCWWGG 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 116
FaeI CATG 2 cut(s) 161, 410
FatI CATG 2 cut(s) 157, 406
FauNDI CATATG 1 cut(s) 809
Fnu4HI GCNGC 1 cut(s) 768
FokI GGATG 5 cut(s) 152, 197, 461, 542, 623
FriOI GRGCYC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 768
GluI GCNGC 1 cut(s) 768
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 797
Hin1II CATG 2 cut(s) 161, 410
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 2 cut(s) 260, 268
HpaII CCGG 1 cut(s) 797
HphI GGTGA 2 cut(s) 353, 786
Hpy166II GTNNAC 1 cut(s) 751
Hpy188I TCNGA 3 cut(s) 198, 370, 649
Hpy8I GTNNAC 1 cut(s) 751
HpyCH4III ACNGT 2 cut(s) 127, 681
HpyCH4IV ACGT 2 cut(s) 301, 665
HpyCH4V TGCA 8 cut(s) 327, 334, 355, 383, 445, 526, 607, 695
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 2 cut(s) 301, 665
Hsp92II CATG 2 cut(s) 161, 410
LmnI GCTCC 2 cut(s) 43, 764
Lsp1109I GCAGC 1 cut(s) 754
LweI GCATC 2 cut(s) 219, 342
MaeII ACGT 2 cut(s) 301, 665
MaeIII GTNAC 2 cut(s) 132, 799
MboII GAAGA 1 cut(s) 665
MflI RGATCY 5 cut(s) 198, 412, 493, 574, 655
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 4 cut(s) 13, 83, 296, 345
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 8 cut(s) 100, 112, 235, 301, 403, 484, 565, 739
Mph1103I ATGCAT 1 cut(s) 357
MseI TTAA 2 cut(s) 387, 713
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 797
MspR9I CCNGG 4 cut(s) 265, 477, 558, 639
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 4 cut(s) 265, 477, 558, 639
NdeI CATATG 1 cut(s) 809
NlaIII CATG 2 cut(s) 161, 410
NlaIV GGNNCC 2 cut(s) 129, 253
NsiI ATGCAT 1 cut(s) 357
PagI TCATGA 1 cut(s) 406
PctI GAATGC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 796
PkrI GCNGC 1 cut(s) 769
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 302
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 48
Psp6I CCWGG 4 cut(s) 263, 475, 556, 637
PspGI CCWGG 4 cut(s) 263, 475, 556, 637
PspN4I GGNNCC 2 cut(s) 129, 253
PspPI GGNCC 1 cut(s) 252
PsuI RGATCY 5 cut(s) 198, 412, 493, 574, 655
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 48
SaqAI TTAA 2 cut(s) 387, 713
SatI GCNGC 1 cut(s) 768
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 4 cut(s) 265, 477, 558, 639
SduI GDGCHC 1 cut(s) 48
SetI ASST 5 cut(s) 48, 304, 668, 731, 769
SfaNI GCATC 2 cut(s) 219, 342
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 270
SmoI CTYRAG 1 cut(s) 270
Sse9I AATT 4 cut(s) 13, 83, 296, 345
SsiI CCGC 1 cut(s) 104
SstI GAGCTC 1 cut(s) 48
StyD4I CCNGG 4 cut(s) 263, 475, 556, 637
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 2 cut(s) 127, 681
TaiI ACGT 2 cut(s) 304, 668
TasI AATT 4 cut(s) 13, 83, 296, 345
TfiI GAWTC 1 cut(s) 260
Tru1I TTAA 2 cut(s) 387, 713
Tru9I TTAA 2 cut(s) 387, 713
TscAI CASTG 1 cut(s) 686
TseI GCWGC 1 cut(s) 767
TspDTI ATGAA 6 cut(s) 146, 395, 447, 528, 609, 666
TspGWI ACGGA 1 cut(s) 120
TspRI CASTG 1 cut(s) 686
XapI RAATTY 2 cut(s) 13, 345
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.