Prupe.3G191300_v2.0.a1

F-box Kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000113
Physical Location & Seq
Reverse (-)
20392907 .. 20395740
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G191300.2

Sequence Viewer

Length: 1176 bp
ATGGCGGGCCTTCAGAACTGGCGGCAGAAACTGGACCCCTCTGCTGGGGTGTTTAAACGACCCCTTATTGACTCCGATGACATCATCATTGACATACTGTCCAGGCTTCCAGTCAAATCTTTACTCCAATTTCGGTGTGTATGCAAGTCATGGCATACTTTGATCTCCGATTCTCATCTTGTTAGGAAGCACCTCCGCCGCGCAGTCAGAGGGGTCAATGCTAATAGCAGTAAGCTTCTTATTTCAAACAGTCCTCTGTATTCCATAGACTACGAAGCACTGGAGGATGTCAATAGTTTTGTTGCAATCAAAGAGCTTCATTTACCAGCACCGTTAGTGCTTGACCGAATGAGCATTGTGGGTTCTTGCAACGGCTTGATATGTCTGCACGAAAACAAAGGCGACTTTTTCTTATGGAACCCGTGTACTAGAGATACCCTGAAGTTACCAGGAGTTACTTATTTTCCTTCTAGTCCAATGTTTTATGGATTCGGTTATGATTCCACCATAGAAGATTACAAGGTTATAGTGGGTGGCACATCTAGTAGTGAAAGTGGTTTGCTTACAACCACAATTGCGCTCTTTACTCTAAAATCGGGTTCGTGGAGGACTGTTCAAGACCTTAACTATGTTAAATTGAATGGGCAGGGGTGTTTGTTAAACGAAGCTCTTCATTGGGTAGAATTTGAATGGAGGTGGGAGGGGTATTTCAATGTACTTAGTTCAAGAATCATCACTTTTGATTTAGCGGGGGAAGAATTTCAGGAAATGGTGCCATTATCATCCTATCTTAGCGACCAAAAATATATATCCATCCGTATTGGGACGACTACAAATTGTCTCTTTGTATATATGTTCAATCACAGCAATTTCAGTGATATTGCAATTACAATATGGGTTATGAAGGAATATGGGGTCAAAGAATCTTGGACTAAAATCATAGACATTCCGTTGGAGCTTTTCCGTCCACTTCAAGGAGTATTTTTTCTGAATCTTATATGTATTTTAGAGAGCGGTGAAGTTTGCATGAGTTATTCAAGTGGCCTGGTATCATATAATCCAAAGGAAAATACATTTAGGAGTGTTCTTAGCTCGCCTGTTATTTTGTTGCCTGAAGCAATTATGTACGTAGAGACTTTGGTTTCACCAGTAGTTGAAAGTTGGGCAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

392

Amino Acids

44.29

Weight (kDa)

5.46

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 772
AccBSI CCGCTC 1 cut(s) 1014
AccII CGCG 1 cut(s) 201
AciI CCGC 6 cut(s) 5, 22, 196, 199, 749, 1014
AcsI RAATTY 2 cut(s) 683, 758
AcuI CTGAAG 2 cut(s) 461, 1134
AfaI GTAC 3 cut(s) 427, 717, 1127
AfiI CCNNNNNNNGG 3 cut(s) 44, 45, 974
AhdI GACNNNNNGTC 1 cut(s) 97
AjnI CCWGG 3 cut(s) 101, 448, 1044
AluBI AGCT 5 cut(s) 235, 316, 668, 958, 1092
AluI AGCT 5 cut(s) 235, 316, 668, 958, 1092
Alw26I GTCTC 2 cut(s) 845, 1127
AlwNI CAGNNNCTG 1 cut(s) 31
AoxI GGCC 2 cut(s) 7, 1042
ApoI RAATTY 2 cut(s) 683, 758
Asp700I GAANNNNTTC 2 cut(s) 669, 759
AspLEI GCGC 2 cut(s) 203, 580
AspS9I GGNCC 2 cut(s) 7, 34
AsuHPI GGTGA 2 cut(s) 1028, 1137
AvaII GGWCC 1 cut(s) 34
BanI GGYRCC 1 cut(s) 772
BccI CCATC 1 cut(s) 821
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 3 cut(s) 103, 450, 1046
BcoDI GTCTC 2 cut(s) 845, 1127
BfaI CTAG 3 cut(s) 429, 471, 543
BisI GCNGC 2 cut(s) 23, 199
BlsI GCNGC 2 cut(s) 24, 200
Bme1390I CCNGG 3 cut(s) 103, 450, 1046
Bme18I GGWCC 1 cut(s) 34
BmeRI GACNNNNNGTC 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 7, 34
BmiI GGNNCC 3 cut(s) 36, 419, 774
BmrFI CCNGG 3 cut(s) 103, 450, 1046
BpmI CTGGAG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 1129
BsaBI GATNNNNATC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 45, 974
Bse1I ACTGG 5 cut(s) 23, 36, 110, 285, 1148
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 3 cut(s) 103, 450, 1046
BseGI GGATG 3 cut(s) 292, 782, 813
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 44, 45, 974
BseNI ACTGG 5 cut(s) 23, 36, 110, 285, 1148
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 371
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 2 cut(s) 9, 1044
BshNI GGYRCC 1 cut(s) 772
BslFI GGGAC 1 cut(s) 838
BslI CCNNNNNNNGG 3 cut(s) 44, 45, 974
BsmAI GTCTC 2 cut(s) 845, 1127
BsmFI GGGAC 1 cut(s) 838
BsnI GGCC 2 cut(s) 9, 1044
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 6 cut(s) 5, 22, 196, 199, 749, 1014
BspANI GGCC 2 cut(s) 9, 1044
BspFNI CGCG 1 cut(s) 201
BspLI GGNNCC 3 cut(s) 36, 419, 774
BspQI GCTCTTC 1 cut(s) 675
BspT107I GGYRCC 1 cut(s) 772
BsrBI CCGCTC 1 cut(s) 1014
BsrI ACTGG 5 cut(s) 23, 36, 110, 285, 1148
BssMI GATC 1 cut(s) 162
Bst2UI CCWGG 3 cut(s) 103, 450, 1046
Bst4CI ACNGT 4 cut(s) 99, 251, 333, 613
Bst6I CTCTTC 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 1129
BstC8I GCNNGC 2 cut(s) 7, 1094
BstDEI CTNAG 3 cut(s) 719, 791, 1088
BstF5I GGATG 3 cut(s) 292, 782, 813
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 2 cut(s) 203, 580
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 845, 1127
BstMBI GATC 1 cut(s) 162
BstNI CCWGG 3 cut(s) 103, 450, 1046
BstSCI CCNGG 3 cut(s) 101, 448, 1044
BstSNI TACGTA 1 cut(s) 1129
BstUI CGCG 1 cut(s) 201
BsuRI GGCC 2 cut(s) 9, 1044
BtsCI GGATG 3 cut(s) 292, 782, 813
BtsIMutI CAGTG 2 cut(s) 278, 880
Cac8I GCNNGC 2 cut(s) 7, 1094
CaiI CAGNNNCTG 1 cut(s) 31
CfoI GCGC 2 cut(s) 203, 580
Cfr13I GGNCC 2 cut(s) 7, 34
Csp6I GTAC 3 cut(s) 426, 716, 1126
CviAII CATG 2 cut(s) 150, 1027
CviJI RGCY 9 cut(s) 9, 106, 235, 316, 375, 668, 958, 1044, 1092
CviKI_1 RGCY 9 cut(s) 9, 106, 235, 316, 375, 668, 958, 1044, 1092
CviQI GTAC 3 cut(s) 426, 716, 1126
DdeI CTNAG 3 cut(s) 719, 791, 1088
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
DraI TTTAAA 1 cut(s) 55
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 675
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 675
EciI GGCGGA 1 cut(s) 185
Eco105I TACGTA 1 cut(s) 1129
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 2 cut(s) 461, 1134
EcoRII CCWGG 3 cut(s) 101, 448, 1044
FaeI CATG 2 cut(s) 153, 1030
FaqI GGGAC 1 cut(s) 838
FatI CATG 2 cut(s) 149, 1026
FauI CCCGC 1 cut(s) 742
Fnu4HI GCNGC 2 cut(s) 23, 199
FokI GGATG 3 cut(s) 299, 769, 800
Fsp4HI GCNGC 2 cut(s) 23, 199
FspBI CTAG 3 cut(s) 429, 471, 543
GlaI GCGC 2 cut(s) 202, 579
GluI GCNGC 2 cut(s) 23, 199
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 2 cut(s) 9, 1044
HhaI GCGC 2 cut(s) 203, 580
Hin1II CATG 2 cut(s) 153, 1030
Hin6I GCGC 2 cut(s) 201, 578
HinP1I GCGC 2 cut(s) 201, 578
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 7 cut(s) 71, 170, 489, 500, 729, 923, 991
HphI GGTGA 2 cut(s) 1028, 1137
Hpy166II GTNNAC 2 cut(s) 426, 968
Hpy188I TCNGA 6 cut(s) 15, 76, 169, 209, 990, 1175
Hpy188III TCNNGA 3 cut(s) 617, 726, 764
Hpy8I GTNNAC 2 cut(s) 426, 968
HpyAV CCTTC 3 cut(s) 20, 477, 898
HpyCH4III ACNGT 4 cut(s) 99, 251, 333, 613
HpyCH4IV ACGT 1 cut(s) 1128
HpyCH4V TGCA 6 cut(s) 144, 305, 369, 388, 884, 1026
HpyF3I CTNAG 3 cut(s) 719, 791, 1088
HpySE526I ACGT 1 cut(s) 1128
Hsp92II CATG 2 cut(s) 153, 1030
HspAI GCGC 2 cut(s) 201, 578
Kzo9I GATC 1 cut(s) 162
LguI GCTCTTC 1 cut(s) 675
LmnI GCTCC 1 cut(s) 955
MaeI CTAG 3 cut(s) 429, 471, 543
MaeII ACGT 1 cut(s) 1128
MaeIII GTNAC 2 cut(s) 444, 454
MalI GATC 1 cut(s) 164
MbiI CCGCTC 1 cut(s) 1014
MboI GATC 1 cut(s) 162
MboII GAAGA 3 cut(s) 524, 662, 767
MfeI CAATTG 1 cut(s) 573
MluCI AATT 9 cut(s) 128, 573, 635, 683, 758, 835, 868, 885, 1119
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 933
MnlI CCTC 8 cut(s) 49, 203, 203, 264, 277, 600, 687, 694
MroXI GAANNNNTTC 2 cut(s) 669, 759
MseI TTAA 4 cut(s) 54, 624, 633, 659
MspR9I CCNGG 3 cut(s) 103, 450, 1046
MssI GTTTAAAC 1 cut(s) 55
MunI CAATTG 1 cut(s) 573
MvaI CCWGG 3 cut(s) 103, 450, 1046
MvnI CGCG 1 cut(s) 201
NdeII GATC 1 cut(s) 162
NlaIII CATG 2 cut(s) 153, 1030
NlaIV GGNNCC 3 cut(s) 36, 419, 774
PciSI GCTCTTC 1 cut(s) 675
PdmI GAANNNNTTC 2 cut(s) 669, 759
PfeI GAWTC 6 cut(s) 170, 489, 500, 729, 923, 991
PkrI GCNGC 2 cut(s) 24, 200
PleI GAGTC 1 cut(s) 65
PmeI GTTTAAAC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 65
Ppu21I YACGTR 1 cut(s) 1129
Psp6I CCWGG 3 cut(s) 101, 448, 1044
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 3 cut(s) 101, 448, 1044
PspN4I GGNNCC 3 cut(s) 36, 419, 774
PspPI GGNCC 2 cut(s) 7, 34
PstNI CAGNNNCTG 1 cut(s) 31
RsaI GTAC 3 cut(s) 427, 717, 1127
RsaNI GTAC 3 cut(s) 426, 716, 1126
SapI GCTCTTC 1 cut(s) 675
SaqAI TTAA 4 cut(s) 54, 624, 633, 659
SatI GCNGC 2 cut(s) 23, 199
Sau3AI GATC 1 cut(s) 162
Sau96I GGNCC 2 cut(s) 7, 34
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 103, 450, 1046
SinI GGWCC 1 cut(s) 34
SnaBI TACGTA 1 cut(s) 1129
Sse9I AATT 9 cut(s) 128, 573, 635, 683, 758, 835, 868, 885, 1119
SsiI CCGC 6 cut(s) 5, 22, 196, 199, 749, 1014
SspMI CTAG 3 cut(s) 429, 471, 543
StyD4I CCNGG 3 cut(s) 101, 448, 1044
TaaI ACNGT 4 cut(s) 99, 251, 333, 613
TaiI ACGT 1 cut(s) 1131
TaqII GACCGA 1 cut(s) 360
TasI AATT 9 cut(s) 128, 573, 635, 683, 758, 835, 868, 885, 1119
TatI WGTACW 2 cut(s) 425, 715
TauI GCSGC 2 cut(s) 25, 201
TfiI GAWTC 6 cut(s) 170, 489, 500, 729, 923, 991
Tru1I TTAA 4 cut(s) 54, 624, 633, 659
Tru9I TTAA 4 cut(s) 54, 624, 633, 659
TscAI CASTG 2 cut(s) 285, 880
TspDTI ATGAA 3 cut(s) 308, 662, 917
TspGWI ACGGA 3 cut(s) 806, 939, 953
TspRI CASTG 2 cut(s) 285, 880
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 2 cut(s) 683, 758
XmnI GAANNNNTTC 2 cut(s) 669, 759
XspI CTAG 3 cut(s) 429, 471, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.