Rmu_co8119446.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8119446.1
OG0000113
Physical Location & Seq
Forward (+)
221 .. 601
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8119446.1_g000001.1.cds

Sequence Viewer

Length: 381 bp
atggccaccaattccatggcggacgacggcggcgttcacaagcgagctcgtaccagtgtcgccgacctcgacggcgtccttgatgagatactggcaaggctaccggtcaaatcactgatgcgatttcgctgcgtctgcacgtcatggcgtgctctcatctcccagtctcacttcaactacgcaagcaaaggcttcaccgagaacacctccaggctcttgatatcaatgagtcctctccaatcccaagactgtgaagcatccaaggacttatccctagactgtgaggcattgaaggagttgaaggatgacggagatgctcatcttgcaattggaaagctcgagtttccggtaatgttccctagttccagtcgtagaaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

126

Amino Acids

13.92

Weight (kDa)

6.27

Isoelectric Point (pI)

58.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 20, 30
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 52
AgeI ACCGGT 1 cut(s) 103
AgsI TTSAA 3 cut(s) 175, 292, 301
AjiI CACGTC 1 cut(s) 141
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 47, 337
AluI AGCT 2 cut(s) 47, 337
Alw21I GWGCWC 2 cut(s) 49, 154
Alw26I GTCTC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 338
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 338
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 2 cut(s) 49, 154
BbvI GCAGC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 43, 88
BcgI CGANNNNNNTGC 2 cut(s) 111, 145
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 171
BfaI CTAG 2 cut(s) 275, 360
BisI GCNGC 2 cut(s) 31, 130
BlsI GCNGC 2 cut(s) 32, 131
Bme1390I CCNGG 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 338
BmgBI CACGTC 1 cut(s) 141
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 157
BmsI GCATC 3 cut(s) 108, 266, 304
BmuI ACTGGG 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 15, 261
BsaWI WCCGGW 2 cut(s) 103, 346
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 4 cut(s) 54, 96, 163, 366
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 2 cut(s) 15, 261
BseGI GGATG 2 cut(s) 257, 310
BseJI GATNNNNATC 1 cut(s) 318
BseNI ACTGG 4 cut(s) 54, 96, 163, 366
BseXI GCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 121
BshFI GGCC 1 cut(s) 5
BshTI ACCGGT 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 49, 154
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 2 cut(s) 104, 347
BsmAI GTCTC 1 cut(s) 171
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 49, 154
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 2 cut(s) 20, 30
BspANI GGCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 4 cut(s) 54, 96, 163, 366
BssAI RCCGGY 1 cut(s) 103
BssECI CCNNGG 2 cut(s) 15, 261
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 15, 261
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 251, 281
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 45, 150, 184
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 257, 310
BstMAI GTCTC 1 cut(s) 171
BstMWI GCNNNNNNNGC 2 cut(s) 135, 323
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 141
BtsCI GGATG 2 cut(s) 257, 310
BtsIMutI CAGTG 2 cut(s) 61, 113
Cac8I GCNNGC 3 cut(s) 45, 150, 184
Cfr10I RCCGGY 1 cut(s) 103
CseI GACGC 2 cut(s) 64, 121
Csp6I GTAC 1 cut(s) 51
CspAI ACCGGT 1 cut(s) 103
CviAII CATG 2 cut(s) 16, 144
CviJI RGCY 6 cut(s) 5, 47, 100, 192, 214, 337
CviKI_1 RGCY 6 cut(s) 5, 47, 100, 192, 214, 337
CviQI GTAC 1 cut(s) 51
EaeI YGGCCR 1 cut(s) 3
EciI GGCGGA 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 15, 261
Eco24I GRGCYC 1 cut(s) 49
Eco32I GATATC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 222
EcoT14I CCWWGG 2 cut(s) 15, 261
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 2 cut(s) 15, 261
FaeI CATG 2 cut(s) 19, 147
FaiI YATR 2 cut(s) 17, 145
FatI CATG 2 cut(s) 15, 143
Fnu4HI GCNGC 2 cut(s) 31, 130
FokI GGATG 2 cut(s) 244, 317
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 2 cut(s) 31, 130
FspBI CTAG 2 cut(s) 275, 360
GluI GCNGC 2 cut(s) 31, 130
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 104, 347
HgaI GACGC 2 cut(s) 64, 121
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 2 cut(s) 19, 147
HinfI GANTC 1 cut(s) 229
HpaII CCGG 2 cut(s) 104, 347
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 2 cut(s) 29, 74
HpyAV CCTTC 2 cut(s) 286, 295
HpyCH4III ACNGT 2 cut(s) 251, 281
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 2 cut(s) 138, 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 135, 323
HpySE526I ACGT 1 cut(s) 140
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 2 cut(s) 19, 147
LpnPI CCDG 7 cut(s) 67, 77, 117, 176, 196, 223, 360
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 3 cut(s) 108, 266, 304
MaeI CTAG 2 cut(s) 275, 360
MaeII ACGT 1 cut(s) 140
MfeI CAATTG 1 cut(s) 327
MhlI GDGCHC 2 cut(s) 49, 154
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 10, 327, 376
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 4 cut(s) 77, 217, 243, 277
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 104, 347
MspR9I CCNGG 1 cut(s) 211
MunI CAATTG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 135, 323
NcoI CCATGG 1 cut(s) 15
NlaIII CATG 2 cut(s) 19, 147
PaeR7I CTCGAG 1 cut(s) 338
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 66
PflFI GACNNNGTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 103
PkrI GCNGC 2 cut(s) 32, 131
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 338
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 49
SatI GCNGC 2 cut(s) 31, 130
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 2 cut(s) 49, 154
SetI ASST 5 cut(s) 49, 69, 143, 209, 339
SfaNI GCATC 3 cut(s) 108, 266, 304
Sfr274I CTCGAG 1 cut(s) 338
SlaI CTCGAG 1 cut(s) 338
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 3 cut(s) 10, 327, 376
SsiI CCGC 2 cut(s) 20, 30
SspMI CTAG 2 cut(s) 275, 360
SstI GAGCTC 1 cut(s) 49
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 2 cut(s) 15, 261
TaaI ACNGT 2 cut(s) 251, 281
TaiI ACGT 1 cut(s) 143
TaqI TCGA 2 cut(s) 69, 339
TasI AATT 3 cut(s) 10, 327, 376
TauI GCSGC 1 cut(s) 33
TscAI CASTG 2 cut(s) 61, 120
TseI GCWGC 1 cut(s) 129
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 2 cut(s) 61, 120
Tth111I GACNNNGTC 1 cut(s) 74
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 338
XspI CTAG 2 cut(s) 275, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.