Rorug02G0444600

Lignin degradation and detoxification of lignin-derived products

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000113
Physical Location & Seq
Forward (+)
57100216 .. 57107227
7012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0444600.1

Sequence Viewer

Length: 1641 bp
ATGGCTTCCTCTTCTGTGACCTCAACTTCCATTATGTCCTCTATGTTCCACTCTCCGAAAAGACCGAGTCAGGGGACAAGAAGAAAGGAGCTCATGTCAAAATGCAGCTATGGTGGCGGCGCTGATTTTTCTAGTATTTTAAGCTACTCCCTATCTGTATCTCGTAATCTCAGCAGTTCTAAGCTGGCTTTTGAGCCCTGTGAGGGGTATTACAACTCCAACTTGCTGTCTGAATCTTTGGCCTTCTTTGGTGAGAAAGACTTCTCATTCTTTGGATATAAGTATGTCTCAAATACTAGAAGACAGAGGCAGAAGGATCCCACTGCTCACTCTGGCAAAACTAGGCCTGTGGCTGTTCAAGTTGCAGAGGAAGTCACAATAAATAAGAGACCCTTAATGAAGCAAAGGCGGGTTGTTGTGACAGGCATGGGTGTGGTGACCCCTCTTGGACATGATCCAGATGTCTTCTACAATAATCTTCTTGAAGGTGTCAGTGGTATAAGTGAGATAGAGGCTTTTGACTGTACCAAATTTCCCACGAGAATTGCTGGAGAAATAAAGTCTTTGCTAACAGAAGGATGGGTCGCGCCAAAGCTTTCTAAGAGGGCAGACAAGTTTATCGTTTACTTGATCACTGCTGGAAAGAAGGCATTGGCAGATGGTGGGATTACAATAGAAGTTATGGGAGAAATAGATATAAGTAGATGTGGGGTTGTAATTGGCTCTGCACTGGGAGGCATGAGAGTTTTTAGTGATGGAGTAGAAGCATTAAGAACTTCGTACAAGAAGATGAATCCCTTTTCTGTTCCTTTTGCAACAACCAGCATGGGTTCTGCTATCCTAGCAATGGATTTGGGATGGATGGGCCCTAACTACTCAATATCTACAGCTTGTGCCACCAGTAACTTTTGCATACTGAATGCTGCAAATCATATTATCAGAGGTGAAACCGATATGATGCTTTGTGGTGGTTCAGAAGCAGCAATTATTCCTATAGGTTTGGGGGGTTTTGCAGCATGCGGGGCTCTATCACAAAGGAATAGCGAACCAACCAAAGCTTCAAGCCCTTGGGATATTAATCGTGATGGGTTTGTTATTGGAGAAGGAGCTGGGGTTTTGCTCTTGGAAGAGCTTGAACATGCTCAGAGAAGAGGTGCAAACATCTATGCTGAATTTTTAGGTGGAAGCTTCACTTGTGATGCATATCACATGACTGAGCCTCATCCTGATGGGGCAGGTATTGCACTTTGCATTGAGAATGCCCTGTCCCAATCTGGAGTCAATAGAGAAGATGTGAACTACGTAAATGCATATGCTACATCCACACCAACTGATCTGCAAGAATATCAAGCCCTAATCCACTGTTTTGGAAACAATCCTGAGCTAAGAGTGAATTCCACAAAATCCATGATCGGTCACCTTTTAGGAGCCTCAGGTGCTGTAGAAGCTGTGGCAACAATCAAGGCTATACAGACTGGATTTGTCCATCCGAACATCAATCTTGAGAATCCTGATGCAGGCGTGGACATGAATGTGCTTGTTGGCCCCAAGAAGGAAAAATTGGACATAAAAGTGGCATTGTCTAACTCATTTGGATTCGGTGGACACAACTCATCTATCTTATTTGCACCCTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00053 ko01100 map00053 map01100
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

546

Amino Acids

58.5

Weight (kDa)

6.61

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ketoacyl-synt PF00109 136 - 381 6e-55 Beta-ketoacyl synthase, N-terminal domain
Ketoacyl-synt_C PF02801 389 - 502 4.3e-30 Beta-ketoacyl synthase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1226
AccII CGCG 1 cut(s) 587
AciI CCGC 3 cut(s) 117, 409, 1020
AclWI GGATC 3 cut(s) 311, 324, 449
AcsI RAATTY 3 cut(s) 530, 1172, 1393
AfaI GTAC 2 cut(s) 526, 782
AfiI CCNNNNNNNGG 6 cut(s) 71, 203, 204, 847, 1517, 1552
AgsI TTSAA 5 cut(s) 359, 485, 1062, 1136, 1636
AjuI GAANNNNNNNTTGG 4 cut(s) 1042, 1074, 1544, 1576
Alw21I GWGCWC 1 cut(s) 93
Alw26I GTCTC 2 cut(s) 292, 382
AlwI GGATC 3 cut(s) 311, 324, 449
AlwNI CAGNNNCTG 1 cut(s) 1439
AoxI GGCC 4 cut(s) 240, 344, 865, 1543
ApaI GGGCCC 1 cut(s) 869
ApeKI GCWGC 4 cut(s) 105, 923, 980, 1013
ApoI RAATTY 3 cut(s) 530, 1172, 1393
AseI ATTAAT 1 cut(s) 1077
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 2 cut(s) 122, 589
AspS9I GGNCC 3 cut(s) 865, 866, 1544
AsuHPI GGTGA 4 cut(s) 263, 448, 956, 1409
AxyI CCTNAGG 1 cut(s) 1432
BaeGI GKGCMC 1 cut(s) 869
BamHI GGATCC 1 cut(s) 316
BanII GRGCYC 4 cut(s) 93, 198, 869, 1027
BauI CACGAG 1 cut(s) 538
BbsI GAAGAC 2 cut(s) 307, 457
Bbv12I GWGCWC 1 cut(s) 93
BbvI GCAGC 4 cut(s) 117, 910, 992, 1025
BccI CCATC 8 cut(s) 573, 653, 749, 852, 856, 1079, 1223, 1494
BclI TGATCA 1 cut(s) 630
BcoDI GTCTC 2 cut(s) 292, 382
BfaI CTAG 4 cut(s) 132, 297, 342, 842
BfmI CTRYAG 3 cut(s) 885, 993, 1440
BfoI RGCGCY 1 cut(s) 123
BfuAI ACCTGC 1 cut(s) 1226
BisI GCNGC 5 cut(s) 106, 118, 924, 981, 1014
BlsI GCNGC 5 cut(s) 107, 119, 925, 982, 1015
BmgT120I GGNCC 3 cut(s) 865, 866, 1544
BmiI GGNNCC 4 cut(s) 318, 867, 1429, 1546
BmrI ACTGGG 1 cut(s) 740
BmsI GCATC 3 cut(s) 948, 1189, 1504
BmuI ACTGGG 1 cut(s) 740
BpiI GAAGAC 2 cut(s) 307, 457
BpmI CTGGAG 2 cut(s) 570, 1296
Bpu10I CCTNAGC 1 cut(s) 1380
BpuEI CTTGAG 1 cut(s) 1523
BsaAI YACGTR 1 cut(s) 1303
BsaBI GATNNNNATC 2 cut(s) 1077, 1203
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 1 cut(s) 1067
BsaXI ACNNNNNCTCC 4 cut(s) 80, 110, 1098, 1128
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 203, 204, 847, 1517, 1552
Bse1I ACTGG 3 cut(s) 735, 900, 1480
Bse21I CCTNAGG 1 cut(s) 1432
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 2 cut(s) 1077, 1203
BseDI CCNNGG 1 cut(s) 1067
BseGI GGATG 6 cut(s) 584, 863, 867, 1222, 1319, 1486
BseJI GATNNNNATC 2 cut(s) 1077, 1203
BseLI CCNNNNNNNGG 6 cut(s) 71, 203, 204, 847, 1517, 1552
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 5 cut(s) 184, 1157, 1206, 1371, 1446
BseNI ACTGG 3 cut(s) 735, 900, 1480
BseSI GKGCMC 1 cut(s) 869
BseXI GCAGC 4 cut(s) 117, 910, 992, 1025
BseYI CCCAGC 1 cut(s) 1109
BsgI GTGCAG 1 cut(s) 711
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 4 cut(s) 242, 346, 867, 1545
BsiHKAI GWGCWC 1 cut(s) 93
BslFI GGGAC 2 cut(s) 88, 1252
BslI CCNNNNNNNGG 6 cut(s) 71, 203, 204, 847, 1517, 1552
BsmAI GTCTC 2 cut(s) 292, 382
BsmFI GGGAC 2 cut(s) 88, 1252
BsmI GAATGC 2 cut(s) 925, 1264
BsnI GGCC 4 cut(s) 242, 346, 867, 1545
Bso31I GGTCTC 1 cut(s) 382
Bsp120I GGGCCC 1 cut(s) 865
Bsp1286I GDGCHC 4 cut(s) 93, 198, 869, 1027
Bsp143I GATC 5 cut(s) 316, 454, 630, 1333, 1410
BspACI CCGC 3 cut(s) 117, 409, 1020
BspANI GGCC 4 cut(s) 242, 346, 867, 1545
BspCNI CTCAG 5 cut(s) 183, 1156, 1207, 1372, 1445
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 4 cut(s) 318, 867, 1429, 1546
BspMI ACCTGC 1 cut(s) 1226
BspPI GGATC 3 cut(s) 311, 324, 449
BspQI GCTCTTC 1 cut(s) 1122
BspTNI GGTCTC 1 cut(s) 382
BsrDI GCAATG 1 cut(s) 852
BsrI ACTGG 3 cut(s) 735, 900, 1480
BssECI CCNNGG 1 cut(s) 1067
BssMI GATC 5 cut(s) 316, 454, 630, 1333, 1410
BssSI CACGAG 1 cut(s) 538
BssT1I CCWWGG 1 cut(s) 1067
Bst2BI CACGAG 1 cut(s) 538
Bst4CI ACNGT 2 cut(s) 524, 1364
Bst6I CTCTTC 3 cut(s) 16, 1122, 1144
BstAPI GCANNNNNTGC 1 cut(s) 1241
BstBAI YACGTR 1 cut(s) 1303
BstC8I GCNNGC 3 cut(s) 186, 1018, 1519
BstDEI CTNAG 8 cut(s) 170, 180, 600, 1143, 1215, 1380, 1385, 1432
BstEII GGTNACC 2 cut(s) 436, 1415
BstENI CCTNNNNNAGG 1 cut(s) 1515
BstF5I GGATG 6 cut(s) 584, 863, 867, 1222, 1319, 1486
BstFNI CGCG 1 cut(s) 587
BstH2I RGCGCY 1 cut(s) 123
BstHHI GCGC 2 cut(s) 122, 589
BstKTI GATC 5 cut(s) 319, 457, 633, 1336, 1413
BstMAI GTCTC 2 cut(s) 292, 382
BstMBI GATC 5 cut(s) 316, 454, 630, 1333, 1410
BstMWI GCNNNNNNNGC 6 cut(s) 114, 842, 1022, 1241, 1436, 1445
BstNSI RCATGY 2 cut(s) 1020, 1142
BstPI GGTNACC 2 cut(s) 436, 1415
BstSFI CTRYAG 3 cut(s) 885, 993, 1440
BstSLI GKGCMC 1 cut(s) 869
BstSNI TACGTA 1 cut(s) 1303
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 4 cut(s) 117, 910, 992, 1025
BstV2I GAAGAC 2 cut(s) 307, 457
BstX2I RGATCY 1 cut(s) 316
BstXI CCANNNNNNTGG 1 cut(s) 1367
BstYI RGATCY 1 cut(s) 316
Bsu36I CCTNAGG 1 cut(s) 1432
BsuRI GGCC 4 cut(s) 242, 346, 867, 1545
BtsCI GGATG 6 cut(s) 584, 863, 867, 1222, 1319, 1486
BtsI GCAGTG 2 cut(s) 321, 633
BtsIMutI CAGTG 5 cut(s) 321, 499, 633, 728, 1360
BveI ACCTGC 1 cut(s) 1226
Cac8I GCNNGC 3 cut(s) 186, 1018, 1519
CaiI CAGNNNCTG 1 cut(s) 1439
CfoI GCGC 2 cut(s) 122, 589
Cfr13I GGNCC 3 cut(s) 865, 866, 1544
Csp6I GTAC 2 cut(s) 525, 781
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviQI GTAC 2 cut(s) 525, 781
DdeI CTNAG 8 cut(s) 170, 180, 600, 1143, 1215, 1380, 1385, 1432
DpnI GATC 5 cut(s) 318, 456, 632, 1335, 1412
DpnII GATC 5 cut(s) 316, 454, 630, 1333, 1410
Eam1104I CTCTTC 3 cut(s) 16, 1122, 1144
EarI CTCTTC 3 cut(s) 16, 1122, 1144
Ecl136II GAGCTC 1 cut(s) 91
Eco105I TACGTA 1 cut(s) 1303
Eco130I CCWWGG 1 cut(s) 1067
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 4 cut(s) 93, 198, 869, 1027
Eco31I GGTCTC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 1432
Eco91I GGTNACC 2 cut(s) 436, 1415
EcoICRI GAGCTC 1 cut(s) 91
EcoNI CCTNNNNNAGG 1 cut(s) 1515
EcoO109I RGGNCCY 1 cut(s) 866
EcoO65I GGTNACC 2 cut(s) 436, 1415
EcoRI GAATTC 1 cut(s) 1393
EcoT14I CCWWGG 1 cut(s) 1067
EcoT22I ATGCAT 2 cut(s) 1204, 1312
EcoT38I GRGCYC 4 cut(s) 93, 198, 869, 1027
ErhI CCWWGG 1 cut(s) 1067
FalI AAGNNNNNCTT 4 cut(s) 377, 409, 1177, 1209
FaqI GGGAC 2 cut(s) 88, 1252
FauI CCCGC 2 cut(s) 402, 1013
FauNDI CATATG 1 cut(s) 1312
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 5 cut(s) 106, 118, 924, 981, 1014
FokI GGATG 6 cut(s) 591, 870, 874, 1209, 1306, 1473
FriOI GRGCYC 4 cut(s) 93, 198, 869, 1027
Fsp4HI GCNGC 5 cut(s) 106, 118, 924, 981, 1014
FspBI CTAG 4 cut(s) 132, 297, 342, 842
GlaI GCGC 2 cut(s) 121, 588
GluI GCNGC 5 cut(s) 106, 118, 924, 981, 1014
GsaI CCCAGC 1 cut(s) 1113
GsuI CTGGAG 2 cut(s) 570, 1296
HaeII RGCGCY 1 cut(s) 123
HaeIII GGCC 4 cut(s) 242, 346, 867, 1545
HhaI GCGC 2 cut(s) 122, 589
Hin6I GCGC 2 cut(s) 120, 587
HinP1I GCGC 2 cut(s) 120, 587
HindIII AAGCTT 3 cut(s) 593, 1056, 1186
HinfI GANTC 6 cut(s) 67, 233, 793, 1278, 1507, 1596
HphI GGTGA 4 cut(s) 263, 448, 956, 1409
Hpy166II GTNNAC 4 cut(s) 625, 1297, 1525, 1604
Hpy188I TCNGA 6 cut(s) 57, 232, 941, 976, 1146, 1491
Hpy188III TCNNGA 8 cut(s) 458, 482, 1082, 1226, 1275, 1379, 1502, 1511
Hpy8I GTNNAC 4 cut(s) 625, 1297, 1525, 1604
HpyAV CCTTC 7 cut(s) 253, 307, 479, 569, 640, 1097, 1546
HpyCH4III ACNGT 2 cut(s) 524, 1364
HpyCH4IV ACGT 1 cut(s) 1302
HpyF10VI GCNNNNNNNGC 6 cut(s) 114, 842, 1022, 1241, 1436, 1445
HpyF3I CTNAG 8 cut(s) 170, 180, 600, 1143, 1215, 1380, 1385, 1432
HpySE526I ACGT 1 cut(s) 1302
HspAI GCGC 2 cut(s) 120, 587
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 5 cut(s) 316, 454, 630, 1333, 1410
LguI GCTCTTC 1 cut(s) 1122
LmnI GCTCC 3 cut(s) 88, 1106, 1427
Lsp1109I GCAGC 4 cut(s) 117, 910, 992, 1025
LweI GCATC 3 cut(s) 948, 1189, 1504
MaeI CTAG 4 cut(s) 132, 297, 342, 842
MaeII ACGT 1 cut(s) 1302
MaeIII GTNAC 6 cut(s) 16, 373, 418, 436, 902, 1415
MalI GATC 5 cut(s) 318, 456, 632, 1335, 1412
MboI GATC 5 cut(s) 316, 454, 630, 1333, 1410
MboII GAAGA 9 cut(s) 3, 93, 312, 457, 470, 799, 1139, 1161, 1301
MflI RGATCY 1 cut(s) 316
MhlI GDGCHC 4 cut(s) 93, 198, 869, 1027
MluCI AATT 7 cut(s) 530, 543, 717, 984, 1172, 1393, 1559
MlyI GAGTC 2 cut(s) 76, 1287
MmeI TCCRAC 1 cut(s) 243
Mph1103I ATGCAT 2 cut(s) 1204, 1312
MroXI GAANNNNTTC 1 cut(s) 260
MseI TTAA 4 cut(s) 140, 395, 770, 1077
MslI CAYNNNNRTG 4 cut(s) 431, 1227, 1532, 1571
Mva1269I GAATGC 2 cut(s) 925, 1264
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 6 cut(s) 114, 842, 1022, 1241, 1436, 1445
NdeI CATATG 1 cut(s) 1312
NdeII GATC 5 cut(s) 316, 454, 630, 1333, 1410
NlaIV GGNNCC 4 cut(s) 318, 867, 1429, 1546
NmuCI GTSAC 5 cut(s) 16, 373, 418, 436, 1415
NsiI ATGCAT 2 cut(s) 1204, 1312
NspI RCATGY 2 cut(s) 1020, 1142
PaeI GCATGC 1 cut(s) 1020
PceI AGGCCT 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 1122
PctI GAATGC 2 cut(s) 925, 1264
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 4 cut(s) 233, 793, 1507, 1596
PflFI GACNNNGTC 1 cut(s) 66
PkrI GCNGC 5 cut(s) 107, 119, 925, 982, 1015
PleI GAGTC 2 cut(s) 75, 1286
PpsI GAGTC 2 cut(s) 75, 1286
Ppu21I YACGTR 1 cut(s) 1303
PshBI ATTAAT 1 cut(s) 1077
Psp124BI GAGCTC 1 cut(s) 93
PspEI GGTNACC 2 cut(s) 436, 1415
PspFI CCCAGC 1 cut(s) 1109
PspN4I GGNNCC 4 cut(s) 318, 867, 1429, 1546
PspOMI GGGCCC 1 cut(s) 865
PspPI GGNCC 3 cut(s) 865, 866, 1544
PstNI CAGNNNCTG 1 cut(s) 1439
PsuI RGATCY 1 cut(s) 316
PsyI GACNNNGTC 1 cut(s) 66
RsaI GTAC 2 cut(s) 526, 782
RsaNI GTAC 2 cut(s) 525, 781
RseI CAYNNNNRTG 4 cut(s) 431, 1227, 1532, 1571
SacI GAGCTC 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 1122
SaqAI TTAA 4 cut(s) 140, 395, 770, 1077
SatI GCNGC 5 cut(s) 106, 118, 924, 981, 1014
Sau3AI GATC 5 cut(s) 316, 454, 630, 1333, 1410
Sau96I GGNCC 3 cut(s) 865, 866, 1544
SchI GAGTC 2 cut(s) 76, 1287
SduI GDGCHC 4 cut(s) 93, 198, 869, 1027
SfaNI GCATC 3 cut(s) 948, 1189, 1504
SfcI CTRYAG 3 cut(s) 885, 993, 1440
SmiMI CAYNNNNRTG 4 cut(s) 431, 1227, 1532, 1571
SmlI CTYRAG 1 cut(s) 1502
SmoI CTYRAG 1 cut(s) 1502
SnaBI TACGTA 1 cut(s) 1303
SphI GCATGC 1 cut(s) 1020
Sse9I AATT 7 cut(s) 530, 543, 717, 984, 1172, 1393, 1559
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 3 cut(s) 117, 409, 1020
SspMI CTAG 4 cut(s) 132, 297, 342, 842
SstI GAGCTC 1 cut(s) 93
StuI AGGCCT 1 cut(s) 346
StyI CCWWGG 1 cut(s) 1067
TaaI ACNGT 2 cut(s) 524, 1364
TaiI ACGT 1 cut(s) 1305
TaqII GACCGA 2 cut(s) 79, 1403
TasI AATT 7 cut(s) 530, 543, 717, 984, 1172, 1393, 1559
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 4 cut(s) 233, 793, 1507, 1596
Tru1I TTAA 4 cut(s) 140, 395, 770, 1077
Tru9I TTAA 4 cut(s) 140, 395, 770, 1077
TscAI CASTG 5 cut(s) 328, 499, 640, 735, 1367
TseFI GTSAC 5 cut(s) 16, 373, 418, 436, 1415
TseI GCWGC 4 cut(s) 105, 923, 980, 1013
Tsp45I GTSAC 5 cut(s) 16, 373, 418, 436, 1415
TspDTI ATGAA 3 cut(s) 413, 806, 1544
TspRI CASTG 5 cut(s) 328, 499, 640, 735, 1367
Tth111I GACNNNGTC 1 cut(s) 66
VspI ATTAAT 1 cut(s) 1077
XagI CCTNNNNNAGG 1 cut(s) 1515
XapI RAATTY 3 cut(s) 530, 1172, 1393
XceI RCATGY 2 cut(s) 1020, 1142
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 4 cut(s) 132, 297, 342, 842
Zsp2I ATGCAT 2 cut(s) 1204, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.