FvH4_6g39930

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Reverse (-)
31541511 .. 31544743
3233 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39930.t1

Sequence Viewer

Length: 912 bp
ATGCGGATGCAGTTCTCCATGAAGCCGCCCAGCACCATGGGCTTGGCGGATTTGAAGGGTGTGAAGGACGCTGAGCTGGATTTGAAGAGTTTCAGAGGTGACCGTGTCGCAATCAGAGAGCTGGAGTTTCCGGTGTGTCTTGATTTCGTTCCCGAGATTGTGAATGTTGGTAGTTGTAATGGGATTATTTGTGTTCAGGTTCGCAAGGATTTTGTGTTGTGGAACCCTTGTACTGGAGACCACACGGTGTTGCCGAAACCGAGTGGTGTTTCGTGCTCTCCGCAGTATTATGGATTCGGTTATGATGAAATCAATGATGATTACAAAGTAGTGAAGGGGTCATATATTGAAATTGATGATTGTGGTGGGGAGAAACCGATGATTCAGGTGTTTTCGCTGAGGAGAGGTGCATGGAACACCTATCCAGGCCCAAAGAACAATTGCATGAGAGGGCAGGGGGGTTTTGTGAATGGAGTGCTGCATTGGTTGTGGTTTGAGGAGTGGTGGGAGGTTGACAGCACGGAGATTAGGCCTTTTAGTTTAGCTGAGGAGAAATTTCTGGAGGCAATGCCGATTCCCTGGTATGGTTTTGGTGGAATTTTGATTTCAGGGAATCATCTCTGTGTATATAATGACAGAGGGCTGGTGAGGATTCTGATGATGAAGGAATATGGGGTCATGGAGTCTTGGACTGAAGTTCTGTATCTGACTTTTCATACTGTACCTCAGATATATGAGGAAATATTAATGGTGAAACCTCTGTGGATTCTAGAGAATGGGGATGTTTTGGCGTACAAATACAACAAGGAGGCTACTTGTCAGTATATAAACCAAATGATAAGGTATTTACGAATGTTATCAGGCCTATATGGAGTAACAAGTTTGAAGCAGTCACTTACAGAGAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

304

Amino Acids

34.78

Weight (kDa)

5.28

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 50 - 235 3.1e-15 F-box associated beta propeller domain
FBA_3 PF08268 56 - 188 1.4e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 4, 26, 47, 281
AcsI RAATTY 2 cut(s) 554, 597
AcuI CTGAAG 1 cut(s) 714
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 3 cut(s) 232, 723, 794
AfiI CCNNNNNNNGG 2 cut(s) 233, 584
AgsI TTSAA 4 cut(s) 55, 85, 350, 886
AjnI CCWGG 2 cut(s) 424, 578
AluBI AGCT 3 cut(s) 76, 121, 545
AluI AGCT 3 cut(s) 76, 121, 545
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 231
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 3 cut(s) 427, 530, 862
ApeKI GCWGC 1 cut(s) 478
ApoI RAATTY 2 cut(s) 554, 597
AseI ATTAAT 1 cut(s) 746
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 1 cut(s) 428
AsuHPI GGTGA 3 cut(s) 110, 658, 763
AvaI CYCGRG 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 2 cut(s) 398, 546
BbvI GCAGC 1 cut(s) 465
BciT130I CCWGG 2 cut(s) 426, 580
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 770
BisI GCNGC 2 cut(s) 26, 479
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 2 cut(s) 27, 480
Bme1390I CCNGG 2 cut(s) 426, 580
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 2 cut(s) 426, 580
BpmI CTGGAG 3 cut(s) 143, 255, 581
Bpu10I CCTNAGC 2 cut(s) 398, 546
Bpu1102I GCTNAGC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 36, 578
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 584
Bse1I ACTGG 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 573
BseBI CCWGG 2 cut(s) 426, 580
BseDI CCNNGG 2 cut(s) 36, 578
BseGI GGATG 2 cut(s) 12, 787
BseLI CCNNNNNNNGG 2 cut(s) 233, 584
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 4 cut(s) 63, 389, 537, 740
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 3 cut(s) 415, 512, 563
BseXI GCAGC 1 cut(s) 465
BseYI CCCAGC 1 cut(s) 29
BshFI GGCC 3 cut(s) 429, 532, 864
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 2 cut(s) 233, 584
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 3 cut(s) 429, 532, 864
Bso31I GGTCTC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 278
Bsp1720I GCTNAGC 1 cut(s) 72
Bsp19I CCATGG 1 cut(s) 36
BspACI CCGC 4 cut(s) 4, 26, 47, 281
BspANI GGCC 3 cut(s) 429, 532, 864
BspCNI CTCAG 4 cut(s) 64, 390, 538, 739
BspLI GGNNCC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 231
BsrDI GCAATG 1 cut(s) 573
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 36, 578
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 426, 580
Bst4CI ACNGT 3 cut(s) 104, 247, 721
Bst6I CTCTTC 1 cut(s) 80
BstDEI CTNAG 4 cut(s) 72, 398, 546, 726
BstDSI CCRYGG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 98
BstF5I GGATG 2 cut(s) 12, 787
BstMAI GTCTC 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 2 cut(s) 426, 580
BstPI GGTNACC 1 cut(s) 98
BstSCI CCNGG 2 cut(s) 424, 578
BstV1I GCAGC 1 cut(s) 465
BstXI CCANNNNNNTGG 2 cut(s) 37, 43
BsuRI GGCC 3 cut(s) 429, 532, 864
BtgI CCRYGG 1 cut(s) 36
BtsCI GGATG 2 cut(s) 12, 787
Cfr13I GGNCC 1 cut(s) 428
CseI GACGC 1 cut(s) 77
Csp6I GTAC 3 cut(s) 231, 722, 793
CviAII CATG 5 cut(s) 19, 37, 411, 445, 679
CviQI GTAC 3 cut(s) 231, 722, 793
DdeI CTNAG 4 cut(s) 72, 398, 546, 726
DraIII CACNNNGTG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
EciI GGCGGA 1 cut(s) 62
Eco130I CCWWGG 1 cut(s) 36
Eco147I AGGCCT 2 cut(s) 532, 864
Eco31I GGTCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 714
Eco88I CYCGRG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 98
EcoO65I GGTNACC 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 424, 578
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 5 cut(s) 22, 40, 414, 448, 682
FatI CATG 5 cut(s) 18, 36, 410, 444, 678
Fnu4HI GCNGC 2 cut(s) 26, 479
FokI GGATG 2 cut(s) 19, 794
Fsp4HI GCNGC 2 cut(s) 26, 479
FspBI CTAG 1 cut(s) 770
GluI GCNGC 2 cut(s) 26, 479
GsaI CCCAGC 1 cut(s) 33
GsuI CTGGAG 3 cut(s) 143, 255, 581
HaeIII GGCC 3 cut(s) 429, 532, 864
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 77
Hin1II CATG 5 cut(s) 22, 40, 414, 448, 682
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 7 cut(s) 294, 382, 574, 613, 652, 683, 766
HpaII CCGG 1 cut(s) 131
HphI GGTGA 3 cut(s) 110, 658, 763
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 5 cut(s) 95, 116, 657, 708, 729
Hpy188III TCNNGA 4 cut(s) 140, 152, 560, 770
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 4 cut(s) 49, 58, 328, 658
HpyCH4III ACNGT 3 cut(s) 104, 247, 721
HpyCH4V TGCA 4 cut(s) 10, 410, 444, 481
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpyF3I CTNAG 4 cut(s) 72, 398, 546, 726
Hsp92II CATG 5 cut(s) 22, 40, 414, 448, 682
Lsp1109I GCAGC 1 cut(s) 465
MaeI CTAG 1 cut(s) 770
MaeIII GTNAC 3 cut(s) 98, 874, 891
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 439
MhlI GDGCHC 1 cut(s) 278
MluCI AATT 4 cut(s) 351, 439, 554, 597
MlyI GAGTC 1 cut(s) 692
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 1 cut(s) 746
MslI CAYNNNNRTG 1 cut(s) 621
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 426, 580
MunI CAATTG 1 cut(s) 439
MvaI CCWGG 2 cut(s) 426, 580
MwoI GCNNNNNNNGC 1 cut(s) 39
NcoI CCATGG 1 cut(s) 36
NlaIII CATG 5 cut(s) 22, 40, 414, 448, 682
NlaIV GGNNCC 1 cut(s) 224
NmuCI GTSAC 2 cut(s) 98, 891
PceI AGGCCT 2 cut(s) 532, 864
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 6 cut(s) 294, 382, 574, 613, 652, 766
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 2 cut(s) 27, 480
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
PshBI ATTAAT 1 cut(s) 746
Psp6I CCWGG 2 cut(s) 424, 578
PspEI GGTNACC 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 29
PspGI CCWGG 2 cut(s) 424, 578
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 3 cut(s) 232, 723, 794
RsaNI GTAC 3 cut(s) 231, 722, 793
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 1 cut(s) 746
SatI GCNGC 2 cut(s) 26, 479
Sau96I GGNCC 1 cut(s) 428
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 2 cut(s) 426, 580
SduI GDGCHC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 621
Sse9I AATT 4 cut(s) 351, 439, 554, 597
SseBI AGGCCT 2 cut(s) 532, 864
SsiI CCGC 4 cut(s) 4, 26, 47, 281
SspI AATATT 1 cut(s) 744
SspMI CTAG 1 cut(s) 770
StuI AGGCCT 2 cut(s) 532, 864
StyD4I CCNGG 2 cut(s) 424, 578
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 104, 247, 721
TasI AATT 4 cut(s) 351, 439, 554, 597
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 6 cut(s) 294, 382, 574, 613, 652, 766
Tru1I TTAA 1 cut(s) 746
Tru9I TTAA 1 cut(s) 746
TseFI GTSAC 2 cut(s) 98, 891
TseI GCWGC 1 cut(s) 478
Tsp45I GTSAC 2 cut(s) 98, 891
TspDTI ATGAA 4 cut(s) 35, 321, 677, 704
TspGWI ACGGA 1 cut(s) 536
Tth111I GACNNNGTC 1 cut(s) 104
VspI ATTAAT 1 cut(s) 746
XapI RAATTY 2 cut(s) 554, 597
XbaI TCTAGA 1 cut(s) 769
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.