Rw5G037330

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
65727841 .. 65728971
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037330.1

Sequence Viewer

Length: 663 bp
ATGGCGGAGGACGGCGGCGTAGCTCACACCGAGTTCGACGACGGCGAAATCATTTCAGAGATTCTGGCGAGGCTACCGGTCAAATCTGTGATGCGATTCCGGTGCGTTTCCAAGTCGTGGAACACTCTGATCTCCGATCCTTACTTCGCTAAGAAGCATTTCAGGTACGCAGAAATGGGCATCACCGAGAACAGTTCCAGGCTCCTTTATTCAATGGACCCTCCACAATCCCTAGACCACGAAGCATTGAAGGATTTGAAGGATCACAGGGATGGTTATTTTGCCAACAGAGAGCTTGATCTGCCGGTAATGATCCCGGAGTTTTCCAATCGTTATAAAAGTATTGTTGTTGGGCGGGCTGGTGTTAGCACAATATGGTTGATGAAGGAATATGGGGTGAAGCAATCTTGGACTCAAGTTATTAGGTGTTCTAAAAGGGAAATTCCTAAAGAGTACAGACTCCTGTTCTTGCAGCCTATTTGTATTCTAGAGAATGGAGAACTTGTAGGTAATGATTTTCGTGCAGGTTTCTTGGTGTTATATGATCCAAAGGAAAATACATTCAAGAATGTTATCAAGACTCATAATGAATTGAATTGTGGAGCTTTAGTTTACAGAGAGACTTTAGTTTCACCAGTAACCGGCAGTGTTGTAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

220

Amino Acids

25.2

Weight (kDa)

6.23

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 50 1.4e-09 F-box domain
F-box-like PF12937 16 - 54 1.2e-06 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
Acc36I ACCTGC 1 cut(s) 515
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 654
AciI CCGC 3 cut(s) 5, 15, 355
AclWI GGATC 4 cut(s) 131, 270, 307, 539
AcsI RAATTY 1 cut(s) 441
AfaI GTAC 2 cut(s) 167, 455
AfiI CCNNNNNNNGG 2 cut(s) 117, 641
AgeI ACCGGT 1 cut(s) 76
AgsI TTSAA 5 cut(s) 213, 250, 259, 565, 595
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 3 cut(s) 23, 295, 605
AluI AGCT 3 cut(s) 23, 295, 605
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 4 cut(s) 131, 270, 307, 539
ApeKI GCWGC 1 cut(s) 472
ApoI RAATTY 1 cut(s) 441
AsiGI ACCGGT 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 175, 409, 624
AvaII GGWCC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 484
BccI CCATC 1 cut(s) 266
BceAI ACGGC 2 cut(s) 28, 58
BcgI CGANNNNNNTGC 2 cut(s) 84, 118
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 2 cut(s) 233, 488
BfuAI ACCTGC 1 cut(s) 515
BisI GCNGC 2 cut(s) 16, 473
BlsI GCNGC 2 cut(s) 17, 474
Bme1390I CCNGG 2 cut(s) 199, 317
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 203, 219
BmrFI CCNGG 2 cut(s) 199, 317
BmsI GCATC 2 cut(s) 81, 189
BpuEI CTTGAG 1 cut(s) 399
BpuMI CCSGG 1 cut(s) 317
BsaWI WCCGGW 2 cut(s) 76, 99
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 594, 624
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 641
Bse118I RCCGGY 3 cut(s) 76, 304, 641
Bse1I ACTGG 1 cut(s) 635
BseBI CCWGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 117, 641
BseNI ACTGG 1 cut(s) 635
BseXI GCAGC 1 cut(s) 484
BsgI GTGCAG 1 cut(s) 543
BshTI ACCGGT 1 cut(s) 76
BsiSI CCGG 5 cut(s) 77, 100, 305, 317, 642
BslI CCNNNNNNNGG 2 cut(s) 117, 641
BsmAI GTCTC 1 cut(s) 614
Bsp143I GATC 6 cut(s) 129, 136, 262, 298, 312, 544
BspACI CCGC 3 cut(s) 5, 15, 355
BspLI GGNNCC 2 cut(s) 203, 219
BspMI ACCTGC 1 cut(s) 515
BspPI GGATC 4 cut(s) 131, 270, 307, 539
BsrFI RCCGGY 3 cut(s) 76, 304, 641
BsrI ACTGG 1 cut(s) 635
BssAI RCCGGY 3 cut(s) 76, 304, 641
BssMI GATC 6 cut(s) 129, 136, 262, 298, 312, 544
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 6 cut(s) 132, 139, 265, 301, 315, 547
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 6 cut(s) 129, 136, 262, 298, 312, 544
BstMWI GCNNNNNNNGC 1 cut(s) 301
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 197, 315
BstV1I GCAGC 1 cut(s) 484
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 1 cut(s) 652
BveI ACCTGC 1 cut(s) 515
Cac8I GCNNGC 1 cut(s) 357
Cfr10I RCCGGY 3 cut(s) 76, 304, 641
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 166, 454
CspAI ACCGGT 1 cut(s) 76
CviJI RGCY 7 cut(s) 23, 73, 202, 295, 359, 475, 605
CviKI_1 RGCY 7 cut(s) 23, 73, 202, 295, 359, 475, 605
CviQI GTAC 2 cut(s) 166, 454
DdeI CTNAG 1 cut(s) 150
DpnI GATC 6 cut(s) 131, 138, 264, 300, 314, 546
DpnII GATC 6 cut(s) 129, 136, 262, 298, 312, 544
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 197
FaiI YATR 6 cut(s) 336, 376, 393, 541, 543, 585
FauI CCCGC 1 cut(s) 348
FblI GTMKAC 1 cut(s) 654
Fnu4HI GCNGC 2 cut(s) 16, 473
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 2 cut(s) 16, 473
FspBI CTAG 2 cut(s) 233, 488
GluI GCNGC 2 cut(s) 16, 473
HapII CCGG 5 cut(s) 77, 100, 305, 317, 642
HinfI GANTC 5 cut(s) 61, 96, 412, 459, 580
HpaII CCGG 5 cut(s) 77, 100, 305, 317, 642
HphI GGTGA 3 cut(s) 175, 409, 624
Hpy166II GTNNAC 2 cut(s) 613, 655
Hpy188I TCNGA 4 cut(s) 58, 129, 136, 662
Hpy188III TCNNGA 3 cut(s) 488, 565, 577
Hpy8I GTNNAC 2 cut(s) 613, 655
Hpy99I CGWCG 2 cut(s) 41, 44
HpyAV CCTTC 3 cut(s) 244, 253, 379
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 472, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 301
HpyF3I CTNAG 1 cut(s) 150
Kzo9I GATC 6 cut(s) 129, 136, 262, 298, 312, 544
LmnI GCTCC 2 cut(s) 207, 602
Lsp1109I GCAGC 1 cut(s) 484
LweI GCATC 2 cut(s) 81, 189
MaeI CTAG 2 cut(s) 233, 488
MaeIII GTNAC 1 cut(s) 637
MalI GATC 6 cut(s) 131, 138, 264, 300, 314, 546
MboI GATC 6 cut(s) 129, 136, 262, 298, 312, 544
MluCI AATT 3 cut(s) 441, 590, 595
MlyI GAGTC 3 cut(s) 406, 453, 574
MnlI CCTC 2 cut(s) 63, 231
MroXI GAANNNNTTC 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 5 cut(s) 77, 100, 305, 317, 642
MspR9I CCNGG 2 cut(s) 199, 317
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 301
NciI CCSGG 1 cut(s) 317
NdeII GATC 6 cut(s) 129, 136, 262, 298, 312, 544
NlaIV GGNNCC 2 cut(s) 203, 219
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 158
PfeI GAWTC 2 cut(s) 61, 96
PflMI CCANNNNNTGG 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 315
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 2 cut(s) 17, 474
PleI GAGTC 3 cut(s) 406, 453, 574
PpsI GAGTC 3 cut(s) 406, 453, 574
PsiI TTATAA 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 2 cut(s) 203, 219
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 2 cut(s) 167, 455
RsaNI GTAC 2 cut(s) 166, 454
RseI CAYNNNNRTG 1 cut(s) 270
SatI GCNGC 2 cut(s) 16, 473
Sau3AI GATC 6 cut(s) 129, 136, 262, 298, 312, 544
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 3 cut(s) 406, 453, 574
ScrFI CCNGG 2 cut(s) 199, 317
SetI ASST 7 cut(s) 25, 167, 297, 428, 511, 529, 607
SfaNI GCATC 2 cut(s) 81, 189
SinI GGWCC 1 cut(s) 217
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 3 cut(s) 441, 590, 595
SsiI CCGC 3 cut(s) 5, 15, 355
SspMI CTAG 2 cut(s) 233, 488
StyD4I CCNGG 2 cut(s) 197, 315
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 36
TasI AATT 3 cut(s) 441, 590, 595
TatI WGTACW 1 cut(s) 453
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 2 cut(s) 61, 96
TscAI CASTG 1 cut(s) 652
TseI GCWGC 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 398, 603
TspRI CASTG 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 1 cut(s) 217
XapI RAATTY 1 cut(s) 441
XbaI TCTAGA 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 654
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 2 cut(s) 233, 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.