Rmu_sc0032116.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032116.1
OG0000113
Physical Location & Seq
Reverse (-)
2 .. 415
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032116.1_g000001.1.cds

Sequence Viewer

Length: 414 bp
atggcagaggccctcgtccggcggcaacaactggtttccttgccaaaacgacctcgtcactacgaccacgacgaggatgtcaacgatatcatagttgagatactgtcaaggcttccggtcaaatctttgttacgattccgaagtgtatgcaagtcatggagggctttaatctcagattcttattttgttaagaagcacctcggccatgcagtcacagacacatccaacagctccaggcttctgaatctcttatatactagtcccagaatcgtagatctccaaggattggaggatcatgatcatattcgtcggcgcgatgcttttgcagatgaccttcttgaccggtctcgaattcttggttcttgcaatggcttgatatgtttgcaagcgacgatgtttcatggattatactgt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

138

Amino Acids

15.93

Weight (kDa)

8.78

Isoelectric Point (pI)

67.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 1 cut(s) 315
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 202
AcsI RAATTY 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 18, 73, 286
AgeI ACCGGT 1 cut(s) 342
AhlI ACTAGT 1 cut(s) 257
AjnI CCWGG 1 cut(s) 233
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 351
AlwI GGATC 1 cut(s) 300
AoxI GGCC 2 cut(s) 9, 202
ApoI RAATTY 1 cut(s) 351
AsiGI ACCGGT 1 cut(s) 342
AspLEI GCGC 1 cut(s) 315
AspS9I GGNCC 1 cut(s) 10
BcgI CGANNNNNNTGC 4 cut(s) 129, 163, 305, 339
BciT130I CCWGG 1 cut(s) 235
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 1 cut(s) 351
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 1 cut(s) 258
BglII AGATCT 1 cut(s) 274
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
Bme1390I CCNGG 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 217
BsaBI GATNNNNATC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 351
BsaJI CCNNGG 2 cut(s) 199, 280
BsaWI WCCGGW 2 cut(s) 115, 342
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 73, 286
Bse118I RCCGGY 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 36
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 2 cut(s) 199, 280
BseGI GGATG 2 cut(s) 82, 221
BseJI GATNNNNATC 1 cut(s) 297
BseLI CCNNNNNNNGG 3 cut(s) 18, 73, 286
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 315
BshFI GGCC 2 cut(s) 11, 204
BshTI ACCGGT 1 cut(s) 342
BsiSI CCGG 3 cut(s) 19, 116, 343
BslFI GGGAC 1 cut(s) 246
BslI CCNNNNNNNGG 3 cut(s) 18, 73, 286
BsmAI GTCTC 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 2 cut(s) 11, 204
Bso31I GGTCTC 1 cut(s) 351
Bsp143I GATC 3 cut(s) 274, 292, 298
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 11, 204
BspCNI CTCAG 1 cut(s) 185
BspFNI CGCG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 295
BspPI GGATC 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 351
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 342
BsrI ACTGG 1 cut(s) 36
BssAI RCCGGY 1 cut(s) 342
BssECI CCNNGG 2 cut(s) 199, 280
BssMI GATC 3 cut(s) 274, 292, 298
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 235
Bst4CI ACNGT 2 cut(s) 105, 413
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 82, 221
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 315
BstKTI GATC 3 cut(s) 277, 295, 301
BstMAI GTCTC 1 cut(s) 351
BstMBI GATC 3 cut(s) 274, 292, 298
BstNI CCWGG 1 cut(s) 235
BstSCI CCNGG 1 cut(s) 233
BstUI CGCG 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuRI GGCC 2 cut(s) 11, 204
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 82, 221
Cac8I GCNNGC 1 cut(s) 387
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 315
Cfr10I RCCGGY 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 10
CspAI ACCGGT 1 cut(s) 342
CviAII CATG 4 cut(s) 156, 206, 296, 401
CviJI RGCY 7 cut(s) 11, 112, 164, 204, 231, 238, 372
CviKI_1 RGCY 7 cut(s) 11, 112, 164, 204, 231, 238, 372
DdeI CTNAG 1 cut(s) 172
DpnI GATC 3 cut(s) 276, 294, 300
DpnII GATC 3 cut(s) 274, 292, 298
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 233
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 4 cut(s) 159, 209, 299, 404
FaqI GGGAC 1 cut(s) 246
FatI CATG 4 cut(s) 155, 205, 295, 400
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 23
FokI GGATG 2 cut(s) 89, 208
Fsp4HI GCNGC 1 cut(s) 23
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 23
GsuI CTGGAG 1 cut(s) 217
HaeIII GGCC 2 cut(s) 11, 204
HapII CCGG 3 cut(s) 19, 116, 343
HhaI GCGC 1 cut(s) 315
Hin1II CATG 4 cut(s) 159, 209, 299, 404
Hin6I GCGC 1 cut(s) 313
HinP1I GCGC 1 cut(s) 313
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 4 cut(s) 135, 176, 244, 267
HpaII CCGG 3 cut(s) 19, 116, 343
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 140, 175, 243
Hpy188III TCNNGA 3 cut(s) 296, 338, 348
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 3 cut(s) 74, 312, 394
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 2 cut(s) 105, 413
HpyCH4V TGCA 5 cut(s) 150, 209, 326, 366, 385
HpyF3I CTNAG 1 cut(s) 172
Hsp92II CATG 4 cut(s) 159, 209, 299, 404
HspAI GCGC 1 cut(s) 313
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 274, 292, 298
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 7 cut(s) 17, 32, 129, 220, 247, 277, 356
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 3 cut(s) 56, 129, 211
MalI GATC 3 cut(s) 276, 294, 300
MboI GATC 3 cut(s) 274, 292, 298
MflI RGATCY 1 cut(s) 274
MluCI AATT 1 cut(s) 351
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 6 cut(s) 23, 63, 67, 153, 209, 283
MseI TTAA 2 cut(s) 167, 189
MspI CCGG 3 cut(s) 19, 116, 343
MspR9I CCNGG 1 cut(s) 235
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 1 cut(s) 315
NdeII GATC 3 cut(s) 274, 292, 298
NlaIII CATG 4 cut(s) 159, 209, 299, 404
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 56, 211
PagI TCATGA 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PfeI GAWTC 4 cut(s) 135, 176, 244, 267
PflFI GACNNNGTC 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 286
PinAI ACCGGT 1 cut(s) 342
PkrI GCNGC 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 233
PspGI CCWGG 1 cut(s) 233
PspPI GGNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 167, 189
SatI GCNGC 1 cut(s) 23
Sau3AI GATC 3 cut(s) 274, 292, 298
Sau96I GGNCC 1 cut(s) 10
ScrFI CCNGG 1 cut(s) 235
SetI ASST 4 cut(s) 55, 201, 233, 336
SfaNI GCATC 1 cut(s) 307
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 1 cut(s) 351
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 233
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 2 cut(s) 105, 413
TaqI TCGA 1 cut(s) 349
TasI AATT 1 cut(s) 351
TauI GCSGC 1 cut(s) 25
TfiI GAWTC 4 cut(s) 135, 176, 244, 267
Tru1I TTAA 2 cut(s) 167, 189
Tru9I TTAA 2 cut(s) 167, 189
TseFI GTSAC 2 cut(s) 56, 211
Tsp45I GTSAC 2 cut(s) 56, 211
TspDTI ATGAA 1 cut(s) 389
Tth111I GACNNNGTC 1 cut(s) 54
Van91I CCANNNNNTGG 1 cut(s) 286
XapI RAATTY 1 cut(s) 351
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.