Rmu_sc0015771.1_g000021

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015771.1
OG0000113
Physical Location & Seq
Reverse (-)
57621 .. 58625
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015771.1_g000021.1.cds

Sequence Viewer

Length: 1005 bp
atgtcctttggtgtggcggaggagaagtttgaggagacagttccgttactagatgattatcatgtttttgatggtgttttagtatataaagatcatctgtgtgtatatcagatcttagatggcatccctgctgttttatcagtatggttgatggaggaatatggggccaaggattcctggactcaagttataaagttttctttcaagaaattacgtggagaggagttgaagcccctgtgcattttgcagaatggtgaaattctgatgcatagggttatgtctgatgatccttttgcatttaatgatcctgatgggtttgatgaggatcttgatgagttgtataatgaacaacttatgcaggatgatcctgatgtgtttgatgaggatcttgatgatttgtattatgaacagcccctgtgcattttgcagaatggtgaaattctgatgcatagggttatgtctgatgatccttttgcatttaatgatcctgacgtgtttgatgaggatcttgatgagttgtataatgaacaacttatgcaggatgatcctgatgtgtttgatgatgagcctggtgtgtttgatgaggatcttgatgagttgtataatgaacaacttatgcaggatgatgtgtttgatgatgagcctggtgtgtttgatgaggatcttgatgagttgtattatgaaaaacttatgcaggatgatcctgatgtgtttgatgatgatcctggtgtgtttgatgaggatcctgatgagttgtattatgaacaacttatgcaggatgatcctgatgtgtttgatgatgatcctggggtgtctaatgaggatcttgaggagttgtattatgaacaacttatgcaggattataatcaacagtgtatgtggaatgcagaaagcctattggtattaactaatcaaaagacatcaaaggctgtttttgaagttgacttgggttttggagctgccactttcaggcagactttagtttcaccggtaacaggcatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

334

Amino Acids

38.96

Weight (kDa)

4.05

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 191, 864
AciI CCGC 1 cut(s) 17
AcsI RAATTY 2 cut(s) 258, 438
AfiI CCNNNNNNNGG 2 cut(s) 969, 995
AflIII ACRYGT 1 cut(s) 492
AgeI ACCGGT 1 cut(s) 988
AgsI TTSAA 3 cut(s) 205, 229, 938
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 5 cut(s) 176, 568, 643, 724, 805
AluBI AGCT 1 cut(s) 959
AluI AGCT 1 cut(s) 959
Alw26I GTCTC 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 959
ApoI RAATTY 2 cut(s) 258, 438
ArsI GACNNNNNNTTYG 2 cut(s) 935, 967
AsiGI ACCGGT 1 cut(s) 988
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 266, 446, 978
BamHI GGATCC 1 cut(s) 742
BbvI GCAGC 1 cut(s) 946
BccI CCATC 4 cut(s) 65, 113, 145, 305
BciT130I CCWGG 5 cut(s) 178, 570, 645, 726, 807
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 50
BglII AGATCT 1 cut(s) 111
BisI GCNGC 1 cut(s) 960
BlsI GCNGC 1 cut(s) 961
Bme1390I CCNGG 5 cut(s) 178, 570, 645, 726, 807
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 166, 744
BmrFI CCNGG 5 cut(s) 178, 570, 645, 726, 807
BmsI GCATC 3 cut(s) 132, 255, 435
BpuEI CTTGAG 2 cut(s) 168, 848
BsaAI YACGTR 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 168, 806
BsaWI WCCGGW 1 cut(s) 988
BsaXI ACNNNNNCTCC 2 cut(s) 11, 41
Bsc4I CCNNNNNNNGG 2 cut(s) 969, 995
Bse118I RCCGGY 1 cut(s) 988
BseBI CCWGG 5 cut(s) 178, 570, 645, 726, 807
BseDI CCNNGG 2 cut(s) 168, 806
BseGI GGATG 6 cut(s) 123, 367, 547, 628, 703, 784
BseLI CCNNNNNNNGG 2 cut(s) 969, 995
BseRI GAGGAG 4 cut(s) 35, 47, 236, 845
BseXI GCAGC 1 cut(s) 946
BshFI GGCC 1 cut(s) 167
BshTI ACCGGT 1 cut(s) 988
BsiSI CCGG 1 cut(s) 989
BslI CCNNNNNNNGG 2 cut(s) 969, 995
BsmAI GTCTC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 1 cut(s) 167
BspACI CCGC 1 cut(s) 17
BspANI GGCC 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 166, 744
BsrFI RCCGGY 1 cut(s) 988
BssAI RCCGGY 1 cut(s) 988
BssECI CCNNGG 2 cut(s) 168, 806
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 5 cut(s) 178, 570, 645, 726, 807
Bst4CI ACNGT 2 cut(s) 40, 873
BstBAI YACGTR 1 cut(s) 215
BstDEI CTNAG 1 cut(s) 115
BstF5I GGATG 6 cut(s) 123, 367, 547, 628, 703, 784
BstMAI GTCTC 1 cut(s) 29
BstNI CCWGG 5 cut(s) 178, 570, 645, 726, 807
BstSCI CCNGG 5 cut(s) 176, 568, 643, 724, 805
BstV1I GCAGC 1 cut(s) 946
BstX2I RGATCY 8 cut(s) 111, 325, 385, 505, 586, 661, 742, 823
BstYI RGATCY 8 cut(s) 111, 325, 385, 505, 586, 661, 742, 823
BsuRI GGCC 1 cut(s) 167
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 6 cut(s) 123, 367, 547, 628, 703, 784
BtsIMutI CAGTG 1 cut(s) 878
CaiI CAGNNNCTG 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 988
Cfr13I GGNCC 1 cut(s) 165
CspAI ACCGGT 1 cut(s) 988
CviAII CATG 1 cut(s) 62
CviJI RGCY 8 cut(s) 167, 232, 412, 568, 643, 894, 929, 959
CviKI_1 RGCY 8 cut(s) 167, 232, 412, 568, 643, 894, 929, 959
DdeI CTNAG 1 cut(s) 115
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 168
EcoRII CCWGG 5 cut(s) 176, 568, 643, 724, 805
EcoT14I CCWWGG 1 cut(s) 168
EcoT22I ATGCAT 2 cut(s) 270, 450
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 65
FatI CATG 1 cut(s) 61
FauNDI CATATG 1 cut(s) 1001
Fnu4HI GCNGC 1 cut(s) 960
FokI GGATG 6 cut(s) 110, 374, 554, 635, 710, 791
Fsp4HI GCNGC 1 cut(s) 960
FspBI CTAG 1 cut(s) 50
GluI GCNGC 1 cut(s) 960
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 989
Hin1II CATG 1 cut(s) 65
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 2 cut(s) 173, 181
HpaII CCGG 1 cut(s) 989
HphI GGTGA 3 cut(s) 266, 446, 978
Hpy166II GTNNAC 1 cut(s) 943
Hpy188I TCNGA 5 cut(s) 111, 264, 283, 444, 463
Hpy8I GTNNAC 1 cut(s) 943
HpyCH4III ACNGT 2 cut(s) 40, 873
HpyCH4IV ACGT 2 cut(s) 214, 492
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 2 cut(s) 214, 492
Hsp92II CATG 1 cut(s) 65
LmnI GCTCC 1 cut(s) 956
Lsp1109I GCAGC 1 cut(s) 946
LweI GCATC 3 cut(s) 132, 255, 435
MaeI CTAG 1 cut(s) 50
MaeII ACGT 2 cut(s) 214, 492
MaeIII GTNAC 2 cut(s) 45, 991
MflI RGATCY 8 cut(s) 111, 325, 385, 505, 586, 661, 742, 823
MluCI AATT 3 cut(s) 209, 258, 438
MlyI GAGTC 1 cut(s) 175
Mph1103I ATGCAT 2 cut(s) 270, 450
MseI TTAA 3 cut(s) 300, 480, 905
MslI CAYNNNNRTG 1 cut(s) 99
MspI CCGG 1 cut(s) 989
MspR9I CCNGG 5 cut(s) 178, 570, 645, 726, 807
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 5 cut(s) 178, 570, 645, 726, 807
NdeI CATATG 1 cut(s) 1001
NlaIII CATG 1 cut(s) 65
NlaIV GGNNCC 2 cut(s) 166, 744
NsiI ATGCAT 2 cut(s) 270, 450
PctI GAATGC 1 cut(s) 889
PfeI GAWTC 1 cut(s) 173
PfoI TCCNGGA 1 cut(s) 176
PinAI ACCGGT 1 cut(s) 988
PkrI GCNGC 1 cut(s) 961
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 215
PsiI TTATAA 2 cut(s) 191, 864
Psp6I CCWGG 5 cut(s) 176, 568, 643, 724, 805
PspGI CCWGG 5 cut(s) 176, 568, 643, 724, 805
PspN4I GGNNCC 2 cut(s) 166, 744
PspPI GGNCC 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 8 cut(s) 111, 325, 385, 505, 586, 661, 742, 823
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 3 cut(s) 300, 480, 905
SatI GCNGC 1 cut(s) 960
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 5 cut(s) 178, 570, 645, 726, 807
SetI ASST 3 cut(s) 217, 495, 961
SfaNI GCATC 3 cut(s) 132, 255, 435
SmiMI CAYNNNNRTG 1 cut(s) 99
SmlI CTYRAG 2 cut(s) 183, 827
SmoI CTYRAG 2 cut(s) 183, 827
Sse9I AATT 3 cut(s) 209, 258, 438
SsiI CCGC 1 cut(s) 17
SspMI CTAG 1 cut(s) 50
StyD4I CCNGG 5 cut(s) 176, 568, 643, 724, 805
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 2 cut(s) 40, 873
TaiI ACGT 2 cut(s) 217, 495
TasI AATT 3 cut(s) 209, 258, 438
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 3 cut(s) 300, 480, 905
Tru9I TTAA 3 cut(s) 300, 480, 905
TscAI CASTG 1 cut(s) 878
TseI GCWGC 1 cut(s) 959
TspDTI ATGAA 7 cut(s) 360, 420, 540, 621, 696, 777, 858
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 878
XapI RAATTY 2 cut(s) 258, 438
XspI CTAG 1 cut(s) 50
Zsp2I ATGCAT 2 cut(s) 270, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.