Rroxscaffold_1G00020010

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000113
Physical Location & Seq
Reverse (-)
24418876 .. 24420013
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00020010.1

Sequence Viewer

Length: 888 bp
ATGGCGGAGGATGGTGGCGTCAGTAAGCGAGCTGACACCGGGTTCGACGACGGCGTAATCCCTTCAGAGATTCTGGCGAGGCTACCGGTCATATCTGTGATGCGATTCCGGTACGCAGAGATGGGCATCACCGAGAACAGCTACAGCCTCCTTTATTCGATGGACCCTCCGCAATCTCTAGACCACGAAGCATTGAAGGATTTGAAGGATCATAGTGATGTTTATTTTGCCAACAGAAAGCTTGGTTTTCCGGTAATGTACTCCAAGTTGTTACCAAGAAGTACATTGCCCGCTTTTAATCCGCAGGTGTTTAGTGGGTTTGGTTATGATTCTGCTCCTGATGATTACAAGCTAATAGTGGGGACTAAAATGATGGGTGAAGAAATTTCCATTCAGGTTTTCACTCTGAAAACGAGTTCATGGAAGGTGCTCCCCATTACCACTGCTCTTAACGTCTCAGGTCCGGGGTTGTTTTTGAATGGAGCTTTGCACTGGTTGGCAACGGTTCAGCCAAATGCAGGGAATCGCCAAACAATTTGGTCTTTTGATTTGGTGGAGGAGGAGTTTCATCAGATGATTCCATTACCCTATGATGATGCTTACTTTCGAGAGGAGTATGGGGTCAAGCAATCTTGGACTCAAGTTATAAAGTTTTCTGAAAGGGTTATACCTAGAGCGTACAGACACGCCTGCTTGCGGCCTATTTGTATTCTAGAGAGTGGAGAACTTTTGGTTAACGATGGGCGTGCAGGTTTCTTGGTGTTATATGATCCAAAGGAAAACACATTCAAGAATGTTACCAAGACTCATAGTGAATTGAATTGTGGAGCTTTAGTTTACAGAGAGACTTTAGTTTCACCAGTAACCGGCAGTGTTGTAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

295

Amino Acids

33.12

Weight (kDa)

5.32

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 100 - 198 2.5e-11 F-box associated beta propeller domain
FBA_1 PF07734 102 - 201 6.6e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
AarI CACCTGC 1 cut(s) 295
Acc36I ACCTGC 2 cut(s) 295, 740
AccI GTMKAC 1 cut(s) 879
AciI CCGC 5 cut(s) 5, 170, 291, 302, 697
AclWI GGATC 2 cut(s) 216, 764
AcsI RAATTY 1 cut(s) 384
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 18
AfaI GTAC 4 cut(s) 113, 260, 283, 680
AfiI CCNNNNNNNGG 3 cut(s) 518, 696, 866
AgeI ACCGGT 1 cut(s) 85
AgsI TTSAA 5 cut(s) 196, 205, 478, 790, 820
AluBI AGCT 6 cut(s) 32, 141, 241, 352, 485, 830
AluI AGCT 6 cut(s) 32, 141, 241, 352, 485, 830
Alw21I GWGCWC 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 460, 839
AlwI GGATC 2 cut(s) 216, 764
AoxI GGCC 1 cut(s) 698
ApoI RAATTY 1 cut(s) 384
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
AsiGI ACCGGT 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 163, 461
AsuC2I CCSGG 2 cut(s) 40, 465
AsuHPI GGTGA 3 cut(s) 121, 389, 849
AvaII GGWCC 2 cut(s) 163, 461
Bbv12I GWGCWC 1 cut(s) 432
BccI CCATC 5 cut(s) 5, 115, 154, 367, 734
BceAI ACGGC 1 cut(s) 67
BcgI CGANNNNNNTGC 2 cut(s) 728, 762
BcnI CCSGG 2 cut(s) 40, 465
BcoDI GTCTC 2 cut(s) 460, 839
BfaI CTAG 3 cut(s) 179, 672, 713
BfmI CTRYAG 1 cut(s) 142
BfuAI ACCTGC 2 cut(s) 295, 740
BisI GCNGC 1 cut(s) 698
BlsI GCNGC 1 cut(s) 699
Bme1390I CCNGG 2 cut(s) 40, 465
Bme18I GGWCC 2 cut(s) 163, 461
BmgT120I GGNCC 2 cut(s) 163, 461
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 40, 465
BmsI GCATC 3 cut(s) 90, 135, 586
BpuEI CTTGAG 1 cut(s) 624
BpuMI CCSGG 2 cut(s) 40, 465
BsaBI GATNNNNATC 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 464
BsaWI WCCGGW 3 cut(s) 85, 108, 250
BsaXI ACNNNNNCTCC 4 cut(s) 548, 578, 819, 849
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 696, 866
Bse118I RCCGGY 2 cut(s) 85, 866
Bse1I ACTGG 2 cut(s) 497, 860
Bse3DI GCAATG 1 cut(s) 284
Bse8I GATNNNNATC 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 464
BseGI GGATG 1 cut(s) 16
BseJI GATNNNNATC 1 cut(s) 125
BseLI CCNNNNNNNGG 3 cut(s) 518, 696, 866
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 497, 860
BseRI GAGGAG 3 cut(s) 572, 575, 626
BsgI GTGCAG 1 cut(s) 768
BshFI GGCC 1 cut(s) 700
BshTI ACCGGT 1 cut(s) 85
BsiHKAI GWGCWC 1 cut(s) 432
BsiSI CCGG 6 cut(s) 39, 86, 109, 251, 464, 867
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 518, 696, 866
BsmAI GTCTC 2 cut(s) 460, 839
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 376
BsnI GGCC 1 cut(s) 700
Bsp1286I GDGCHC 1 cut(s) 432
Bsp143I GATC 2 cut(s) 208, 769
BspACI CCGC 5 cut(s) 5, 170, 291, 302, 697
BspANI GGCC 1 cut(s) 700
BspCNI CTCAG 1 cut(s) 470
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 2 cut(s) 295, 740
BspPI GGATC 2 cut(s) 216, 764
BsrDI GCAATG 1 cut(s) 284
BsrFI RCCGGY 2 cut(s) 85, 866
BsrI ACTGG 2 cut(s) 497, 860
BssAI RCCGGY 2 cut(s) 85, 866
BssECI CCNNGG 1 cut(s) 464
BssMI GATC 2 cut(s) 208, 769
BssNI GRCGYC 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 505
BstACI GRCGYC 1 cut(s) 18
BstC8I GCNNGC 5 cut(s) 30, 291, 691, 695, 747
BstDEI CTNAG 1 cut(s) 457
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 211, 772
BstMAI GTCTC 2 cut(s) 460, 839
BstMBI GATC 2 cut(s) 208, 769
BstSCI CCNGG 2 cut(s) 38, 463
BstSFI CTRYAG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 700
BtsCI GGATG 1 cut(s) 16
BtsI GCAGTG 2 cut(s) 441, 877
BtsIMutI CAGTG 3 cut(s) 441, 490, 877
BveI ACCTGC 2 cut(s) 295, 740
Cac8I GCNNGC 5 cut(s) 30, 291, 691, 695, 747
Cfr10I RCCGGY 2 cut(s) 85, 866
Cfr13I GGNCC 2 cut(s) 163, 461
CseI GACGC 1 cut(s) 7
Csp6I GTAC 4 cut(s) 112, 259, 282, 679
CspAI ACCGGT 1 cut(s) 85
CviAII CATG 1 cut(s) 420
CviQI GTAC 4 cut(s) 112, 259, 282, 679
DdeI CTNAG 1 cut(s) 457
DpnI GATC 2 cut(s) 210, 771
DpnII GATC 2 cut(s) 208, 769
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 163, 461
Eco57I CTGAAG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 1 cut(s) 423
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 419
FauI CCCGC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 879
Fnu4HI GCNGC 1 cut(s) 698
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 698
FspBI CTAG 3 cut(s) 179, 672, 713
GluI GCNGC 1 cut(s) 698
HaeIII GGCC 1 cut(s) 700
HapII CCGG 6 cut(s) 39, 86, 109, 251, 464, 867
HgaI GACGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 18
Hin1II CATG 1 cut(s) 423
HincII GTYRAC 1 cut(s) 736
HindII GTYRAC 1 cut(s) 736
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 7 cut(s) 70, 105, 329, 523, 577, 637, 805
HpaI GTTAAC 1 cut(s) 736
HpaII CCGG 6 cut(s) 39, 86, 109, 251, 464, 867
HphI GGTGA 3 cut(s) 121, 389, 849
Hpy166II GTNNAC 3 cut(s) 736, 838, 880
Hpy188I TCNGA 5 cut(s) 67, 408, 573, 658, 887
Hpy188III TCNNGA 5 cut(s) 179, 338, 608, 713, 790
Hpy8I GTNNAC 3 cut(s) 736, 838, 880
Hpy99I CGWCG 2 cut(s) 50, 53
HpyAV CCTTC 4 cut(s) 72, 190, 199, 418
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4IV ACGT 1 cut(s) 453
HpyCH4V TGCA 3 cut(s) 490, 518, 749
HpyF3I CTNAG 1 cut(s) 457
HpySE526I ACGT 1 cut(s) 453
Hsp92I GRCGYC 1 cut(s) 18
Hsp92II CATG 1 cut(s) 423
KspAI GTTAAC 1 cut(s) 736
Kzo9I GATC 2 cut(s) 208, 769
LmnI GCTCC 4 cut(s) 340, 435, 482, 827
LweI GCATC 3 cut(s) 90, 135, 586
MaeI CTAG 3 cut(s) 179, 672, 713
MaeII ACGT 1 cut(s) 453
MaeIII GTNAC 3 cut(s) 270, 796, 862
MalI GATC 2 cut(s) 210, 771
MboI GATC 2 cut(s) 208, 769
MboII GAAGA 1 cut(s) 392
MhlI GDGCHC 1 cut(s) 432
MluCI AATT 4 cut(s) 384, 534, 815, 820
MlyI GAGTC 2 cut(s) 631, 799
MnlI CCTC 6 cut(s) 72, 158, 177, 550, 553, 604
MseI TTAA 3 cut(s) 297, 450, 735
MslI CAYNNNNRTG 2 cut(s) 95, 216
MspI CCGG 6 cut(s) 39, 86, 109, 251, 464, 867
MspR9I CCNGG 2 cut(s) 40, 465
NciI CCSGG 2 cut(s) 40, 465
NdeII GATC 2 cut(s) 208, 769
NlaIII CATG 1 cut(s) 423
NlaIV GGNNCC 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 5 cut(s) 70, 105, 329, 523, 577
PinAI ACCGGT 1 cut(s) 85
PkrI GCNGC 1 cut(s) 699
PleI GAGTC 2 cut(s) 631, 799
PpsI GAGTC 2 cut(s) 631, 799
PsiI TTATAA 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 163, 461
RsaI GTAC 4 cut(s) 113, 260, 283, 680
RsaNI GTAC 4 cut(s) 112, 259, 282, 679
RseI CAYNNNNRTG 2 cut(s) 95, 216
SaqAI TTAA 3 cut(s) 297, 450, 735
SatI GCNGC 1 cut(s) 698
Sau3AI GATC 2 cut(s) 208, 769
Sau96I GGNCC 2 cut(s) 163, 461
SchI GAGTC 2 cut(s) 631, 799
ScrFI CCNGG 2 cut(s) 40, 465
SduI GDGCHC 1 cut(s) 432
SfaNI GCATC 3 cut(s) 90, 135, 586
SfcI CTRYAG 1 cut(s) 142
SinI GGWCC 2 cut(s) 163, 461
SmiMI CAYNNNNRTG 2 cut(s) 95, 216
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
Sse9I AATT 4 cut(s) 384, 534, 815, 820
SsiI CCGC 5 cut(s) 5, 170, 291, 302, 697
SspMI CTAG 3 cut(s) 179, 672, 713
StyD4I CCNGG 2 cut(s) 38, 463
TaaI ACNGT 1 cut(s) 505
TaiI ACGT 1 cut(s) 456
TaqI TCGA 3 cut(s) 45, 158, 607
TasI AATT 4 cut(s) 384, 534, 815, 820
TatI WGTACW 2 cut(s) 258, 281
TauI GCSGC 1 cut(s) 700
TfiI GAWTC 5 cut(s) 70, 105, 329, 523, 577
Tru1I TTAA 3 cut(s) 297, 450, 735
Tru9I TTAA 3 cut(s) 297, 450, 735
TscAI CASTG 3 cut(s) 448, 497, 877
TspDTI ATGAA 2 cut(s) 408, 557
TspRI CASTG 3 cut(s) 448, 497, 877
VpaK11BI GGWCC 2 cut(s) 163, 461
XapI RAATTY 1 cut(s) 384
XbaI TCTAGA 2 cut(s) 178, 712
XmiI GTMKAC 1 cut(s) 879
XspI CTAG 3 cut(s) 179, 672, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.