Rroxscaffold_2G00094250

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000113
Physical Location & Seq
Forward (+)
15564633 .. 15566888
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094250.1

Sequence Viewer

Length: 597 bp
ATGATTCACATATTTTCGCTGAAAACAGGTACATGGAGGGTTCTCAAAGACATTGATTATGTTCCATTTAAAACGTGGCAGGGGTTGTTCTTAAACGGAGCTCTGCATTGGTTATATAATCTACCTGAAGGGGGCTCAAGAATTTTGGCTTTTGATTTAGAGGCAGAGAAATTTCAGAAGACGATTCCATTACCCTGTGATGACTGGTCTTATGATCCCTTGATTCATAAAAATTGTCTCTGTGTTGTTGCTTCCCCTACTGGAGCCGACAGTTTCAACATATGGATGATGAAAGATTATGGGGTCAAGGAATCCTGGACTGAAGTTGTACAATTTTCTTTGGAGAATTATACAGAGGATTATTATGAATTTAGAAGTTACAGCACGCCTGTGTGCATTTTAGAGAATGGTGTAGTTTTGAATGACAAGATGGGTGAGTATGAACACCTCTTGGTAGTATTATCTAATCTAAAGAAGAAGACATTCAAGCATGTTGTTGAGGTCGCGAACAGCATGGAGTTTAGAACAGCCATTTACCGAGAGACATTAGTTTCCCCAGACATCCACACATACAAAACCAACATTATTTGTAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

198

Amino Acids

23.08

Weight (kDa)

5.68

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 153 1.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 506
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 3 cut(s) 141, 170, 368
AcuI CTGAAG 2 cut(s) 147, 342
AfaI GTAC 2 cut(s) 31, 330
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 3 cut(s) 277, 421, 487
AjnI CCWGG 1 cut(s) 314
AleI CACNNNNGTG 1 cut(s) 389
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 2 cut(s) 242, 536
AlwI GGATC 1 cut(s) 209
ApoI RAATTY 3 cut(s) 141, 170, 368
Asp700I GAANNNNTTC 1 cut(s) 482
AsuHPI GGTGA 1 cut(s) 446
BanII GRGCYC 2 cut(s) 103, 137
BbsI GAAGAC 2 cut(s) 185, 485
Bbv12I GWGCWC 1 cut(s) 103
BccI CCATC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 242, 536
Bme1390I CCNGG 1 cut(s) 316
BmiI GGNNCC 1 cut(s) 265
BmrFI CCNGG 1 cut(s) 316
BpiI GAAGAC 2 cut(s) 185, 485
BpmI CTGGAG 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 121
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 2 cut(s) 209, 265
BseBI CCWGG 1 cut(s) 316
BseGI GGATG 2 cut(s) 291, 561
BseLI CCNNNNNNNGG 1 cut(s) 131
BseNI ACTGG 2 cut(s) 209, 265
Bsh1236I CGCG 1 cut(s) 506
BsiHKAI GWGCWC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 242, 536
Bsp1286I GDGCHC 2 cut(s) 103, 137
Bsp1407I TGTACA 1 cut(s) 328
Bsp143I GATC 1 cut(s) 214
Bsp68I TCGCGA 1 cut(s) 506
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 328
BsrI ACTGG 2 cut(s) 209, 265
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 272
BstAUI TGTACA 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 386
BstF5I GGATG 2 cut(s) 291, 561
BstFNI CGCG 1 cut(s) 506
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 2 cut(s) 242, 536
BstMBI GATC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 314
BstUI CGCG 1 cut(s) 506
BstV2I GAAGAC 2 cut(s) 185, 485
BtsCI GGATG 2 cut(s) 291, 561
BtuMI TCGCGA 1 cut(s) 506
Cac8I GCNNGC 1 cut(s) 386
Csp6I GTAC 2 cut(s) 30, 329
CviAII CATG 3 cut(s) 33, 491, 514
CviJI RGCY 5 cut(s) 101, 135, 149, 266, 530
CviKI_1 RGCY 5 cut(s) 101, 135, 149, 266, 530
CviQI GTAC 2 cut(s) 30, 329
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
DraI TTTAAA 1 cut(s) 70
Ecl136II GAGCTC 1 cut(s) 101
Eco24I GRGCYC 2 cut(s) 103, 137
Eco53kI GAGCTC 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 147, 342
EcoICRI GAGCTC 1 cut(s) 101
EcoRII CCWGG 1 cut(s) 314
EcoT38I GRGCYC 2 cut(s) 103, 137
FaeI CATG 3 cut(s) 36, 494, 517
FatI CATG 3 cut(s) 32, 490, 513
FauNDI CATATG 1 cut(s) 281
FokI GGATG 2 cut(s) 298, 548
FriOI GRGCYC 2 cut(s) 103, 137
GsuI CTGGAG 1 cut(s) 282
Hin1II CATG 3 cut(s) 36, 494, 517
HinfI GANTC 4 cut(s) 4, 184, 223, 311
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 2 cut(s) 138, 505
HpyAV CCTTC 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 2 cut(s) 106, 396
HpySE526I ACGT 1 cut(s) 74
Hsp92II CATG 3 cut(s) 36, 494, 517
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 2 cut(s) 98, 263
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 3 cut(s) 190, 487, 490
MhlI GDGCHC 2 cut(s) 103, 137
MluCI AATT 6 cut(s) 141, 170, 232, 332, 346, 368
MnlI CCTC 5 cut(s) 30, 154, 349, 458, 493
MroXI GAANNNNTTC 1 cut(s) 482
MseI TTAA 2 cut(s) 69, 92
MslI CAYNNNNRTG 2 cut(s) 284, 389
MspR9I CCNGG 1 cut(s) 316
MvaI CCWGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 506
NdeI CATATG 1 cut(s) 281
NdeII GATC 1 cut(s) 214
NlaIII CATG 3 cut(s) 36, 494, 517
NlaIV GGNNCC 1 cut(s) 265
NruI TCGCGA 1 cut(s) 506
NspI RCATGY 1 cut(s) 494
OliI CACNNNNGTG 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 482
PfeI GAWTC 4 cut(s) 4, 184, 223, 311
PfoI TCCNGGA 1 cut(s) 314
Psp124BI GAGCTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 265
RruI TCGCGA 1 cut(s) 506
RsaI GTAC 2 cut(s) 31, 330
RsaNI GTAC 2 cut(s) 30, 329
RseI CAYNNNNRTG 2 cut(s) 284, 389
SacI GAGCTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 69, 92
Sau3AI GATC 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 2 cut(s) 103, 137
SetI ASST 7 cut(s) 31, 77, 103, 127, 450, 504, 596
SmiMI CAYNNNNRTG 2 cut(s) 284, 389
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
Sse9I AATT 6 cut(s) 141, 170, 232, 332, 346, 368
SstI GAGCTC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 77
TasI AATT 6 cut(s) 141, 170, 232, 332, 346, 368
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 4 cut(s) 4, 184, 223, 311
Tru1I TTAA 2 cut(s) 69, 92
Tru9I TTAA 2 cut(s) 69, 92
TspDTI ATGAA 4 cut(s) 215, 305, 381, 456
TspGWI ACGGA 1 cut(s) 111
XapI RAATTY 3 cut(s) 141, 170, 368
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.