Rw1G017020

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
37749856 .. 37750440
585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G017020.1

Sequence Viewer

Length: 585 bp
ATGTTCCCTAACGCCAGTGATAGAGAAATTGTGGATTCTTGCAATGGGCTGATTTGTGTAGAAATGGACCAGAAAGACATGGTGATATGGAACCCTTGTACTGGACAATCCAATTTGTTGCCAAAACCTACTGGTCATGATCTCACTATGAAGTTGTCCGGATTTGGTTATGATTCCACTAATGATGATTATAAGGTAGTGAGAGGATACAGTTTTAGAGTTGCGGGTTCTGAGGAAACCGTGGTTCAGGTCTTTAGTTTAAAATCGGGTTCATGGAGGACCCATGAGGGTCTTAGTTACTTTCGCTTGGTAGGGCCAGGGTGCTTGTTAAATGGTGCTCTGCATTGGGCAGAGACCATATTCAATGATTTTCGTCCACCAGATTTAAGGACTATCTCTTTTGATTTAGCGGAGGAAAAGTTTCAGGAGATGCTTCCGTTGCCCTCTCATGCTGGTAATAGATACAGCTTTATTCCTGGAGATTGTTTTGGTGTATATACATATGGCTTTCCACACAATGAGATCTTCAGTAGAATATGGATAATGAAGGAACCCTATAATCGTGGACTGAAGTTGGTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

194

Amino Acids

22.03

Weight (kDa)

5.51

Isoelectric Point (pI)

25.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 8 - 151 5.8e-21 F-box associated beta propeller domain
FBA_1 PF07734 11 - 183 1.2e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 192
AccIII TCCGGA 1 cut(s) 158
AciI CCGC 2 cut(s) 224, 410
AcuI CTGAAG 1 cut(s) 511
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 101
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 2 cut(s) 316, 475
AluBI AGCT 1 cut(s) 468
AluI AGCT 1 cut(s) 468
Alw21I GWGCWC 1 cut(s) 340
Alw26I GTCTC 1 cut(s) 347
Aor13HI TCCGGA 1 cut(s) 158
AoxI GGCC 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 67, 279, 314
AsuHPI GGTGA 1 cut(s) 94
AvaII GGWCC 2 cut(s) 67, 279
Bbv12I GWGCWC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 318, 477
BciVI GTATCC 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 347
BfuI GTATCC 1 cut(s) 200
BglII AGATCT 1 cut(s) 522
Bme1390I CCNGG 2 cut(s) 318, 477
Bme18I GGWCC 2 cut(s) 67, 279
BmgT120I GGNCC 3 cut(s) 67, 279, 314
BmiI GGNNCC 3 cut(s) 92, 281, 552
BmrFI CCNGG 2 cut(s) 318, 477
BmsI GCATC 1 cut(s) 420
BpmI CTGGAG 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 240, 317
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 15, 106, 136
Bse3DI GCAATG 1 cut(s) 49
BseAI TCCGGA 1 cut(s) 158
BseBI CCWGG 2 cut(s) 318, 477
BseDI CCNNGG 2 cut(s) 240, 317
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 3 cut(s) 15, 106, 136
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 340
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 1 cut(s) 316
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 340
Bsp13I TCCGGA 1 cut(s) 158
Bsp143I GATC 2 cut(s) 139, 522
BspACI CCGC 2 cut(s) 224, 410
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 1 cut(s) 223
BspEI TCCGGA 1 cut(s) 158
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 3 cut(s) 92, 281, 552
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 3 cut(s) 15, 106, 136
BssECI CCNNGG 2 cut(s) 240, 317
BssMI GATC 2 cut(s) 139, 522
Bst2UI CCWGG 2 cut(s) 318, 477
Bst4CI ACNGT 2 cut(s) 212, 241
BstDEI CTNAG 2 cut(s) 231, 293
BstDSI CCRYGG 1 cut(s) 240
BstKTI GATC 2 cut(s) 142, 525
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 2 cut(s) 139, 522
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 2 cut(s) 318, 477
BstSCI CCNGG 2 cut(s) 316, 475
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
BsuI GTATCC 1 cut(s) 200
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 240
BtsIMutI CAGTG 1 cut(s) 22
CciI TCATGA 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 67, 279, 314
Csp6I GTAC 1 cut(s) 99
CviAII CATG 5 cut(s) 79, 137, 273, 284, 449
CviJI RGCY 4 cut(s) 49, 316, 468, 507
CviKI_1 RGCY 4 cut(s) 49, 316, 468, 507
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 2 cut(s) 231, 293
DpnI GATC 2 cut(s) 141, 524
DpnII GATC 2 cut(s) 139, 522
DraI TTTAAA 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 67, 279
Eco57I CTGAAG 1 cut(s) 511
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 316, 475
FaeI CATG 5 cut(s) 82, 140, 276, 287, 452
FatI CATG 5 cut(s) 78, 136, 272, 283, 448
FauI CCCGC 1 cut(s) 217
FauNDI CATATG 1 cut(s) 502
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 159
Hin1II CATG 5 cut(s) 82, 140, 276, 287, 452
HinfI GANTC 2 cut(s) 35, 173
HpaII CCGG 1 cut(s) 159
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 2 cut(s) 377, 566
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 137, 159, 425
Hpy8I GTNNAC 2 cut(s) 377, 566
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 2 cut(s) 212, 241
HpyCH4V TGCA 2 cut(s) 42, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 2 cut(s) 231, 293
Hsp92II CATG 5 cut(s) 82, 140, 276, 287, 452
Kpn2I TCCGGA 1 cut(s) 158
Kzo9I GATC 2 cut(s) 139, 522
LweI GCATC 1 cut(s) 420
MaeIII GTNAC 1 cut(s) 296
MalI GATC 2 cut(s) 141, 524
MboI GATC 2 cut(s) 139, 522
MboII GAAGA 1 cut(s) 517
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 27, 112
MnlI CCTC 6 cut(s) 197, 226, 270, 280, 406, 454
MroI TCCGGA 1 cut(s) 158
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 260, 329, 386
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 2 cut(s) 318, 477
MvaI CCWGG 2 cut(s) 318, 477
MwoI GCNNNNNNNGC 1 cut(s) 439
NdeI CATATG 1 cut(s) 502
NdeII GATC 2 cut(s) 139, 522
NlaIII CATG 5 cut(s) 82, 140, 276, 287, 452
NlaIV GGNNCC 3 cut(s) 92, 281, 552
PagI TCATGA 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 35, 173
PfoI TCCNGGA 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 279
PsiI TTATAA 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 2 cut(s) 316, 475
PspGI CCWGG 2 cut(s) 316, 475
PspN4I GGNNCC 3 cut(s) 92, 281, 552
PspPI GGNCC 3 cut(s) 67, 279, 314
PspPPI RGGWCCY 1 cut(s) 279
PsuI RGATCY 1 cut(s) 522
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 3 cut(s) 260, 329, 386
Sau3AI GATC 2 cut(s) 139, 522
Sau96I GGNCC 3 cut(s) 67, 279, 314
ScrFI CCNGG 2 cut(s) 318, 477
SduI GDGCHC 1 cut(s) 340
SetI ASST 4 cut(s) 130, 198, 252, 470
SfaNI GCATC 1 cut(s) 420
SinI GGWCC 2 cut(s) 67, 279
Sse9I AATT 2 cut(s) 27, 112
SsiI CCGC 2 cut(s) 224, 410
StyD4I CCNGG 2 cut(s) 316, 475
TaaI ACNGT 2 cut(s) 212, 241
TasI AATT 2 cut(s) 27, 112
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 2 cut(s) 35, 173
Tru1I TTAA 3 cut(s) 260, 329, 386
Tru9I TTAA 3 cut(s) 260, 329, 386
TscAI CASTG 1 cut(s) 22
TspDTI ATGAA 3 cut(s) 164, 261, 560
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 67, 279
XmnI GAANNNNTTC 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.