RLG00000020787

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
68712299 .. 68713969
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020787

Sequence Viewer

Length: 408 bp
ATGGAGGACTATGAAGCCTTGGAAAGTATTAAGGATGATGTTCATGGTCCTCGTGCTGGTGGTCAGTTTGCAGTCACCCAGCTGGATTTTCCGGTAACGAAAACTATCTCTGATTTCAGTTATAGAGTTCTTGTTGGTGCTTGCAATGGCTTGGTATGTGTAGATGTTGGCTACGAGGCCATTATGTTATGGAACCCTTGTACTAGAGACTCCAAGGTTTTACCAAAACCTCCTCAAGTTGTAGACTCCAATTTTAGCAACTATCTTTATGGATTCGGGTATGATTCTGCTAGTGACGACTACAAGGTGATATGGGGGTTCGCTTGTTATTCAAATGGTGCTACCATGATACACATATTTTCACTGAAAACAGGTGAGCTAGGAGCTCGTTGCTGTAGTTCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

136

Amino Acids

14.85

Weight (kDa)

4.67

Isoelectric Point (pI)

20.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 40 - 129 1.1e-11 F-box associated beta propeller domain
FBA_1 PF07734 45 - 124 8.1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 243
AfaI GTAC 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 56
AgsI TTSAA 1 cut(s) 333
AluBI AGCT 3 cut(s) 82, 379, 386
AluI AGCT 3 cut(s) 82, 379, 386
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 201
AoxI GGCC 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 3 cut(s) 67, 319, 386
AvaII GGWCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 388
BauI CACGAG 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 3 cut(s) 204, 291, 380
BfmI CTRYAG 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 18, 213
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 151
BseDI CCNNGG 2 cut(s) 18, 213
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 56
BseMI GCAATG 1 cut(s) 151
BseRI GAGGAG 1 cut(s) 222
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 1 cut(s) 179
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 201
BsnI GGCC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 388
BspANI GGCC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 18, 213
BssSI CACGAG 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 18, 213
Bst2BI CACGAG 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 142
BstF5I GGATG 1 cut(s) 40
BstMAI GTCTC 1 cut(s) 201
BstSFI CTRYAG 1 cut(s) 394
BsuRI GGCC 1 cut(s) 179
BtsCI GGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 201
CviAII CATG 2 cut(s) 44, 346
CviJI RGCY 7 cut(s) 17, 82, 150, 171, 179, 379, 386
CviKI_1 RGCY 7 cut(s) 17, 82, 150, 171, 179, 379, 386
CviQI GTAC 1 cut(s) 201
Ecl136II GAGCTC 1 cut(s) 386
Eco130I CCWWGG 2 cut(s) 18, 213
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 386
EcoT14I CCWWGG 2 cut(s) 18, 213
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 2 cut(s) 18, 213
FaeI CATG 2 cut(s) 47, 349
FatI CATG 2 cut(s) 43, 345
FblI GTMKAC 1 cut(s) 243
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 3 cut(s) 204, 291, 380
GsaI CCCAGC 1 cut(s) 82
HaeIII GGCC 1 cut(s) 179
HapII CCGG 1 cut(s) 92
Hin1II CATG 2 cut(s) 47, 349
HinfI GANTC 4 cut(s) 209, 245, 273, 284
HpaII CCGG 1 cut(s) 92
HphI GGTGA 3 cut(s) 67, 319, 386
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 1 cut(s) 112
Hpy8I GTNNAC 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 71, 144
Hsp92II CATG 2 cut(s) 47, 349
LmnI GCTCC 1 cut(s) 383
LpnPI CCDG 5 cut(s) 42, 68, 92, 105, 357
MaeI CTAG 3 cut(s) 204, 291, 380
MaeIII GTNAC 3 cut(s) 73, 94, 293
MhlI GDGCHC 1 cut(s) 388
MluCI AATT 1 cut(s) 250
MlyI GAGTC 2 cut(s) 203, 239
MnlI CCTC 4 cut(s) 60, 169, 240, 243
MseI TTAA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 82
MspI CCGG 1 cut(s) 92
NlaIII CATG 2 cut(s) 47, 349
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 2 cut(s) 73, 293
PfeI GAWTC 2 cut(s) 273, 284
PleI GAGTC 2 cut(s) 203, 239
PpsI GAGTC 2 cut(s) 203, 239
Psp124BI GAGCTC 1 cut(s) 388
PspFI CCCAGC 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 47
PvuII CAGCTG 1 cut(s) 82
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SacI GAGCTC 1 cut(s) 388
SaqAI TTAA 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 2 cut(s) 203, 239
SduI GDGCHC 1 cut(s) 388
SetI ASST 7 cut(s) 84, 219, 232, 309, 376, 381, 388
SfcI CTRYAG 1 cut(s) 394
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 250
SspMI CTAG 3 cut(s) 204, 291, 380
SstI GAGCTC 1 cut(s) 388
StyI CCWWGG 2 cut(s) 18, 213
TasI AATT 1 cut(s) 250
TatI WGTACW 1 cut(s) 200
TfiI GAWTC 2 cut(s) 273, 284
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 2 cut(s) 73, 293
Tsp45I GTSAC 2 cut(s) 73, 293
TspDTI ATGAA 2 cut(s) 27, 32
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 3 cut(s) 204, 291, 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.