Rroxscaffold_7G00192940

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000113
Physical Location & Seq
Forward (+)
34329759 .. 34331042
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192940.1

Sequence Viewer

Length: 1284 bp
ATGAAAATGGAAACAAGCAGCAGCAGCAGCTCATTTCCCATTACTAGCAAAGATCTTCCTTGCGATATCATCGAGGAAATTCTGCTGCAGCTGCCGGTCAAGTCGCTGCTCCGTTTCAAATGCGTGAGCAAATCATGGCTTAATCTCATCTCCGACCACAAATTCATCAAGTCACACCTTCACCACTCCACCAAACAACACCCTCACCACGATGATGATGACGGTGATCGAATATCAAACGCACATCTCATGCTCTCCTCAACAACCCTCATTCACTCCCTCCATCTACAGCTACCCAATACTCGTACCAAACAAGAAGAAGAAGAAGCGCCAGCTGCTGCTGCTGCAACTGATGCAGATGATGCAGTAGTACTCGAGTCCATGGTGGAGTACCCGGTGGCGTCGACGGTGAGGCGGCCAGCTGTCAAAGACATCAAGATCGTCGGTTCCTGCAACGGCTTGCTATGCTTGGTGCTCGACTCCCAACACATGATCATATACAACCCCTCCACCAGGCACGTTCAAGAAGTCCCCAACCCGGAGGAAACTGTAGTCGGTAGAGATTACTTTTACGGTTTCGGTTATGATTGTCGCAACGACGACTGTAAAATAGTGAGGGCCACTTCTTCAAGTAAGGATGGAAATTTCGTCACCCAACTTGACATCTTTACTTTGAAGACCAACTCTTGGCGGACAAAAACCAAAACCCTACCCTTTTATTTCATGTCCAACGTGGTGGGTACCCTTCTTAATGGGGCTCTCCACTGGGCAGTCCGTCGAGGAATCAACATCAGTCCTTCTGATGGCGATGACCATGACCCGAGGCCTTTCGGGATCGTCTCCTTTGATCTGACGGAGGAGACTTACAAAGAAGTACCCCTGCCGTGTGACGGTGACAAGCATTTCTCTTTCTATGGATTGGGGGTTTTAGGAGGGTGTCTGAGTATGCTCCACAGTCCCCACGGGTCTGATTATCAAGTGTGGGTTATGAAGGAATATGGAGTCAAGGCGTCTTGGAGCGTATTCACAACCATCCCACAGAAGATGGAGGATTCTAAGGAGTACATGGGACTGATGTCGCTTTTGTGCGTTTTGAAGAACGGCGAAATTCTAATGATGTTGCACAACCACAAAAAGGTTGTGATATACAATCCCGGACAAAGGAAATTTCGAACCATATTCAATGGGGAAATAGGCTCTTCCCAAGTGGCCTTATACCTCGAGACTCTAGTTTCAACAAAAATGTATGCACCATCCTCATCACCATGCATCCCAGCTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

427

Amino Acids

47.79

Weight (kDa)

6.25

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 56 1.2e-09 F-box domain
FBA_1 PF07734 142 - 419 1.1e-29 F-box associated beta propeller domain
FBA_3 PF08268 144 - 401 3.2e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 740
AccB7I CCANNNNNTGG 1 cut(s) 687
AccI GTMKAC 1 cut(s) 404
AciI CCGC 2 cut(s) 415, 691
AclWI GGATC 1 cut(s) 842
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 5 cut(s) 78, 161, 643, 1107, 1166
AcyI GRCGYC 2 cut(s) 401, 1010
AfaI GTAC 6 cut(s) 307, 372, 392, 742, 876, 1064
AfiI CCNNNNNNNGG 7 cut(s) 513, 538, 687, 803, 890, 1135, 1161
AgsI TTSAA 7 cut(s) 118, 524, 630, 676, 1096, 1183, 1236
AjnI CCWGG 1 cut(s) 512
AluBI AGCT 6 cut(s) 30, 91, 292, 335, 422, 1277
AluI AGCT 6 cut(s) 30, 91, 292, 335, 422, 1277
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 3 cut(s) 844, 854, 1217
AlwI GGATC 1 cut(s) 842
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 3 cut(s) 374, 820, 1220
AoxI GGCC 4 cut(s) 416, 618, 824, 1209
ApoI RAATTY 5 cut(s) 78, 161, 643, 1107, 1166
Asp718I GGTACC 1 cut(s) 740
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 618
AsuC2I CCSGG 3 cut(s) 395, 539, 1155
AsuHPI GGTGA 7 cut(s) 173, 197, 236, 421, 643, 905, 1254
AsuII TTCGAA 1 cut(s) 1171
AvaI CYCGRG 3 cut(s) 374, 820, 1220
BanI GGYRCC 1 cut(s) 740
BanII GRGCYC 1 cut(s) 760
BbsI GAAGAC 1 cut(s) 683
Bbv12I GWGCWC 1 cut(s) 477
BccI CCATC 6 cut(s) 291, 632, 797, 1039, 1040, 1261
BceAI ACGGC 3 cut(s) 472, 868, 1117
BciT130I CCWGG 1 cut(s) 514
BclI TGATCA 1 cut(s) 492
BcnI CCSGG 3 cut(s) 395, 539, 1155
BcoDI GTCTC 3 cut(s) 844, 854, 1217
BfaI CTAG 3 cut(s) 45, 1229, 1282
BfmI CTRYAG 3 cut(s) 86, 287, 549
BfoI RGCGCY 1 cut(s) 332
BglII AGATCT 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 372
Bme1390I CCNGG 4 cut(s) 395, 514, 539, 1155
BmeT110I CYCGRG 3 cut(s) 374, 820, 1220
BmgT120I GGNCC 1 cut(s) 618
BmiI GGNNCC 2 cut(s) 448, 742
BmrFI CCNGG 4 cut(s) 395, 514, 539, 1155
BmrI ACTGGG 1 cut(s) 775
BmsI GCATC 3 cut(s) 343, 352, 1278
BmuI ACTGGG 1 cut(s) 775
BoxI GACNNNNGTC 1 cut(s) 1075
BpiI GAAGAC 1 cut(s) 683
Bpu14I TTCGAA 1 cut(s) 1171
BpuMI CCSGG 3 cut(s) 395, 539, 1155
BsaHI GRCGYC 2 cut(s) 401, 1010
BsaJI CCNNGG 3 cut(s) 381, 821, 961
BsaXI ACNNNNNCTCC 2 cut(s) 491, 521
Bsc4I CCNNNNNNNGG 7 cut(s) 513, 538, 687, 803, 890, 1135, 1161
Bse118I RCCGGY 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 770
BseBI CCWGG 1 cut(s) 514
BseDI CCNNGG 3 cut(s) 381, 821, 961
BseGI GGATG 4 cut(s) 643, 1032, 1253, 1269
BseLI CCNNNNNNNGG 7 cut(s) 513, 538, 687, 803, 890, 1135, 1161
BseMII CTCAG 1 cut(s) 932
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 2 cut(s) 247, 872
BseYI CCCAGC 1 cut(s) 1273
BshFI GGCC 4 cut(s) 418, 620, 826, 1211
BshNI GGYRCC 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 3 cut(s) 374, 820, 1220
BsiSI CCGG 4 cut(s) 95, 395, 539, 1155
BslFI GGGAC 3 cut(s) 515, 942, 1083
BslI CCNNNNNNNGG 7 cut(s) 513, 538, 687, 803, 890, 1135, 1161
BsmAI GTCTC 3 cut(s) 844, 854, 1217
BsmBI CGTCTC 1 cut(s) 844
BsmFI GGGAC 3 cut(s) 515, 942, 1083
BsnI GGCC 4 cut(s) 418, 620, 826, 1211
BsoBI CYCGRG 3 cut(s) 374, 820, 1220
Bsp119I TTCGAA 1 cut(s) 1171
Bsp1286I GDGCHC 2 cut(s) 477, 760
Bsp143I GATC 6 cut(s) 52, 226, 438, 492, 834, 847
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 2 cut(s) 415, 691
BspANI GGCC 4 cut(s) 418, 620, 826, 1211
BspCNI CTCAG 1 cut(s) 933
BspLI GGNNCC 2 cut(s) 448, 742
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 1 cut(s) 842
BspQI GCTCTTC 1 cut(s) 1204
BspT104I TTCGAA 1 cut(s) 1171
BspT107I GGYRCC 1 cut(s) 740
BsrFI RCCGGY 1 cut(s) 94
BsrI ACTGG 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 3 cut(s) 381, 821, 961
BssMI GATC 6 cut(s) 52, 226, 438, 492, 834, 847
BssNI GRCGYC 2 cut(s) 401, 1010
BssT1I CCWWGG 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 514
Bst4CI ACNGT 7 cut(s) 224, 409, 550, 575, 605, 893, 956
Bst6I CTCTTC 1 cut(s) 1204
BstACI GRCGYC 2 cut(s) 401, 1010
BstAPI GCANNNNNTGC 2 cut(s) 353, 362
BstBI TTCGAA 1 cut(s) 1171
BstC8I GCNNGC 3 cut(s) 333, 420, 461
BstDEI CTNAG 2 cut(s) 941, 1056
BstDSI CCRYGG 2 cut(s) 381, 961
BstENI CCTNNNNNAGG 1 cut(s) 511
BstF5I GGATG 4 cut(s) 643, 1032, 1253, 1269
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 6 cut(s) 55, 229, 441, 495, 837, 850
BstMAI GTCTC 3 cut(s) 844, 854, 1217
BstMBI GATC 6 cut(s) 52, 226, 438, 492, 834, 847
BstMWI GCNNNNNNNGC 9 cut(s) 24, 27, 91, 335, 341, 344, 353, 362, 465
BstNI CCWGG 1 cut(s) 514
BstPAI GACNNNNGTC 1 cut(s) 1075
BstSCI CCNGG 4 cut(s) 393, 512, 537, 1153
BstSFI CTRYAG 3 cut(s) 86, 287, 549
BstV2I GAAGAC 1 cut(s) 683
BstX2I RGATCY 1 cut(s) 52
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 4 cut(s) 418, 620, 826, 1211
BtgI CCRYGG 2 cut(s) 381, 961
BtgZI GCGATG 1 cut(s) 822
BtsCI GGATG 4 cut(s) 643, 1032, 1253, 1269
BtsIMutI CAGTG 1 cut(s) 763
Cac8I GCNNGC 3 cut(s) 333, 420, 461
CaiI CAGNNNCTG 1 cut(s) 338
CfoI GCGC 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 618
CseI GACGC 2 cut(s) 390, 999
Csp6I GTAC 6 cut(s) 306, 371, 391, 741, 875, 1063
CviAII CATG 8 cut(s) 135, 250, 382, 490, 724, 815, 1066, 1266
CviQI GTAC 6 cut(s) 306, 371, 391, 741, 875, 1063
DdeI CTNAG 2 cut(s) 941, 1056
DpnI GATC 6 cut(s) 54, 228, 440, 494, 836, 849
DpnII GATC 6 cut(s) 52, 226, 438, 492, 834, 847
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 1 cut(s) 1204
EarI CTCTTC 1 cut(s) 1204
EciI GGCGGA 1 cut(s) 706
Eco130I CCWWGG 1 cut(s) 381
Eco147I AGGCCT 1 cut(s) 826
Eco24I GRGCYC 1 cut(s) 760
Eco32I GATATC 1 cut(s) 67
Eco88I CYCGRG 3 cut(s) 374, 820, 1220
EcoNI CCTNNNNNAGG 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 512
EcoRV GATATC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 1271
EcoT38I GRGCYC 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 844
FaeI CATG 8 cut(s) 138, 253, 385, 493, 727, 818, 1069, 1269
FaqI GGGAC 3 cut(s) 515, 942, 1083
FatI CATG 8 cut(s) 134, 249, 381, 489, 723, 814, 1065, 1265
FbaI TGATCA 1 cut(s) 492
FblI GTMKAC 1 cut(s) 404
FokI GGATG 4 cut(s) 650, 1019, 1240, 1256
FriOI GRGCYC 1 cut(s) 760
FspBI CTAG 3 cut(s) 45, 1229, 1282
GlaI GCGC 1 cut(s) 330
GsaI CCCAGC 1 cut(s) 1277
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 4 cut(s) 418, 620, 826, 1211
HapII CCGG 4 cut(s) 95, 395, 539, 1155
HgaI GACGC 2 cut(s) 390, 999
HhaI GCGC 1 cut(s) 331
Hin1I GRCGYC 2 cut(s) 401, 1010
Hin1II CATG 8 cut(s) 138, 253, 385, 493, 727, 818, 1069, 1269
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HinfI GANTC 6 cut(s) 377, 479, 783, 1002, 1052, 1225
HpaII CCGG 4 cut(s) 95, 395, 539, 1155
HphI GGTGA 7 cut(s) 173, 197, 236, 421, 643, 905, 1254
Hpy166II GTNNAC 1 cut(s) 405
Hpy188I TCNGA 5 cut(s) 154, 802, 852, 942, 970
Hpy188III TCNNGA 4 cut(s) 436, 524, 832, 1222
Hpy8I GTNNAC 1 cut(s) 405
Hpy99I CGWCG 5 cut(s) 406, 409, 446, 602, 780
HpyAV CCTTC 4 cut(s) 188, 755, 807, 985
HpyCH4III ACNGT 7 cut(s) 224, 409, 550, 575, 605, 893, 956
HpyCH4IV ACGT 2 cut(s) 519, 732
HpyCH4V TGCA 8 cut(s) 88, 347, 356, 365, 453, 1123, 1250, 1269
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 27, 91, 335, 341, 344, 353, 362, 465
HpyF3I CTNAG 2 cut(s) 941, 1056
HpySE526I ACGT 2 cut(s) 519, 732
Hsp92I GRCGYC 2 cut(s) 401, 1010
Hsp92II CATG 8 cut(s) 138, 253, 385, 493, 727, 818, 1069, 1269
HspAI GCGC 1 cut(s) 329
KpnI GGTACC 1 cut(s) 744
Ksp22I TGATCA 1 cut(s) 492
Kzo9I GATC 6 cut(s) 52, 226, 438, 492, 834, 847
LguI GCTCTTC 1 cut(s) 1204
LmnI GCTCC 3 cut(s) 114, 954, 1017
LweI GCATC 3 cut(s) 343, 352, 1278
MaeI CTAG 3 cut(s) 45, 1229, 1282
MaeII ACGT 2 cut(s) 519, 732
MaeIII GTNAC 4 cut(s) 171, 649, 887, 893
MalI GATC 6 cut(s) 54, 228, 440, 494, 836, 849
MboI GATC 6 cut(s) 52, 226, 438, 492, 834, 847
MboII GAAGA 9 cut(s) 47, 329, 332, 335, 618, 688, 1054, 1108, 1191
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 2 cut(s) 477, 760
MluCI AATT 5 cut(s) 78, 161, 643, 1107, 1166
MlyI GAGTC 4 cut(s) 386, 473, 1011, 1219
MmeI TCCRAC 2 cut(s) 177, 753
Mph1103I ATGCAT 1 cut(s) 1271
MseI TTAA 2 cut(s) 141, 750
MslI CAYNNNNRTG 3 cut(s) 210, 213, 1264
MspA1I CMGCKG 3 cut(s) 91, 335, 422
MspI CCGG 4 cut(s) 95, 395, 539, 1155
MspR9I CCNGG 4 cut(s) 395, 514, 539, 1155
MvaI CCWGG 1 cut(s) 514
MwoI GCNNNNNNNGC 9 cut(s) 24, 27, 91, 335, 341, 344, 353, 362, 465
NciI CCSGG 3 cut(s) 395, 539, 1155
NcoI CCATGG 1 cut(s) 381
NdeII GATC 6 cut(s) 52, 226, 438, 492, 834, 847
NlaIII CATG 8 cut(s) 138, 253, 385, 493, 727, 818, 1069, 1269
NlaIV GGNNCC 2 cut(s) 448, 742
NmuCI GTSAC 4 cut(s) 171, 649, 887, 893
NsiI ATGCAT 1 cut(s) 1271
NspV TTCGAA 1 cut(s) 1171
PaeR7I CTCGAG 2 cut(s) 374, 1220
PceI AGGCCT 1 cut(s) 826
PciSI GCTCTTC 1 cut(s) 1204
PfeI GAWTC 2 cut(s) 783, 1052
PflMI CCANNNNNTGG 1 cut(s) 687
PfoI TCCNGGA 1 cut(s) 1153
PleI GAGTC 4 cut(s) 385, 473, 1010, 1219
PpsI GAGTC 4 cut(s) 385, 473, 1010, 1219
PshAI GACNNNNGTC 1 cut(s) 1075
Psp6I CCWGG 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 1273
PspGI CCWGG 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 448, 742
PspPI GGNCC 1 cut(s) 618
PspXI VCTCGAGB 1 cut(s) 374
PstI CTGCAG 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 338
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 3 cut(s) 91, 335, 422
RsaI GTAC 6 cut(s) 307, 372, 392, 742, 876, 1064
RsaNI GTAC 6 cut(s) 306, 371, 391, 741, 875, 1063
RseI CAYNNNNRTG 3 cut(s) 210, 213, 1264
SalI GTCGAC 1 cut(s) 403
SapI GCTCTTC 1 cut(s) 1204
SaqAI TTAA 2 cut(s) 141, 750
Sau3AI GATC 6 cut(s) 52, 226, 438, 492, 834, 847
Sau96I GGNCC 1 cut(s) 618
ScaI AGTACT 1 cut(s) 372
SchI GAGTC 4 cut(s) 386, 473, 1011, 1219
ScrFI CCNGG 4 cut(s) 395, 514, 539, 1155
SduI GDGCHC 2 cut(s) 477, 760
SfaNI GCATC 3 cut(s) 343, 352, 1278
SfcI CTRYAG 3 cut(s) 86, 287, 549
Sfr274I CTCGAG 2 cut(s) 374, 1220
SfuI TTCGAA 1 cut(s) 1171
SgrDI CGTCGACG 1 cut(s) 403
SlaI CTCGAG 2 cut(s) 374, 1220
SmiMI CAYNNNNRTG 3 cut(s) 210, 213, 1264
SmlI CTYRAG 2 cut(s) 374, 1220
SmoI CTYRAG 2 cut(s) 374, 1220
Sse9I AATT 5 cut(s) 78, 161, 643, 1107, 1166
SseBI AGGCCT 1 cut(s) 826
SsiI CCGC 2 cut(s) 415, 691
SspMI CTAG 3 cut(s) 45, 1229, 1282
StuI AGGCCT 1 cut(s) 826
StyD4I CCNGG 4 cut(s) 393, 512, 537, 1153
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 7 cut(s) 224, 409, 550, 575, 605, 893, 956
TaiI ACGT 2 cut(s) 522, 735
TaqI TCGA 8 cut(s) 72, 229, 375, 404, 477, 778, 1171, 1221
TasI AATT 5 cut(s) 78, 161, 643, 1107, 1166
TatI WGTACW 2 cut(s) 370, 1062
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 2 cut(s) 783, 1052
Tru1I TTAA 2 cut(s) 141, 750
Tru9I TTAA 2 cut(s) 141, 750
TscAI CASTG 1 cut(s) 770
TseFI GTSAC 4 cut(s) 171, 649, 887, 893
Tsp45I GTSAC 4 cut(s) 171, 649, 887, 893
TspDTI ATGAA 4 cut(s) 17, 154, 712, 1004
TspGWI ACGGA 3 cut(s) 101, 764, 869
TspRI CASTG 1 cut(s) 770
Van91I CCANNNNNTGG 1 cut(s) 687
XagI CCTNNNNNAGG 1 cut(s) 511
XapI RAATTY 5 cut(s) 78, 161, 643, 1107, 1166
XhoI CTCGAG 2 cut(s) 374, 1220
XmiI GTMKAC 1 cut(s) 404
XspI CTAG 3 cut(s) 45, 1229, 1282
ZrmI AGTACT 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.