Rorug01G0185500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000113
Physical Location & Seq
Reverse (-)
25690674 .. 25691985
1312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0185500.1

Sequence Viewer

Length: 552 bp
ATGTTTGGCCATCGTGGTTATTCGGCGAATAATCCCTTAGGCTTGCGGTTATTTAGCAGCACCAACAACAAACCATGGACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCACACCATCTCTAATTGGGTAAGATGGATTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGGGGAGGCAGAGGTGGTGATGGAAGAGGTTGACAATGTAGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTAATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTGGATGCACTGAAGCAAGACCTGGGAGACTTAAAGACACTGGTGGAGCCAGTTGTTGATAAGATAGAGAACTATGAATTTCAAGGAAACTACTCTCCAGTTTCTACAAAAGAACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

183

Amino Acids

20.63

Weight (kDa)

5.75

Isoelectric Point (pI)

35.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 506
AcuI CTGAAG 1 cut(s) 461
AdeI CACNNNGTG 1 cut(s) 430
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 3 cut(s) 221, 371, 512
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 1 cut(s) 317
AluI AGCT 1 cut(s) 317
Alw26I GTCTC 1 cut(s) 450
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 2 cut(s) 57, 389
ApoI RAATTY 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 250
AxyI CCTNAGG 1 cut(s) 37
BalI TGGCCA 1 cut(s) 9
BanII GRGCYC 1 cut(s) 158
BbvI GCAGC 2 cut(s) 69, 376
BccI CCATC 4 cut(s) 18, 134, 138, 235
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 452
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 450
BfaI CTAG 1 cut(s) 117
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 2 cut(s) 58, 390
BlsI GCNGC 2 cut(s) 59, 391
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 157, 477
BmrFI CCNGG 1 cut(s) 452
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 2 cut(s) 388, 424
BmuI ACTGGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 510
BpuEI CTTGAG 2 cut(s) 107, 378
BsaJI CCNNGG 2 cut(s) 74, 451
Bse1I ACTGG 5 cut(s) 203, 390, 474, 479, 527
Bse21I CCTNAGG 1 cut(s) 37
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 74, 451
BseGI GGATG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 5 cut(s) 203, 390, 474, 479, 527
BseXI GCAGC 2 cut(s) 69, 376
BshFI GGCC 1 cut(s) 9
BsmAI GTCTC 1 cut(s) 450
BsnI GGCC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 158
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 286
BspLI GGNNCC 2 cut(s) 157, 477
BsrI ACTGG 5 cut(s) 203, 390, 474, 479, 527
BssECI CCNNGG 2 cut(s) 74, 451
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 240
BstAPI GCANNNNNTGC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 44, 102
BstDEI CTNAG 2 cut(s) 37, 294
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 97, 290, 314, 398
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 450
BstV1I GCAGC 2 cut(s) 69, 376
Bsu36I CCTNAGG 1 cut(s) 37
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 1 cut(s) 439
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 3 cut(s) 95, 437, 467
Cac8I GCNNGC 2 cut(s) 44, 102
CseI GACGC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 75
CviJI RGCY 8 cut(s) 9, 42, 156, 293, 308, 317, 389, 478
CviKI_1 RGCY 8 cut(s) 9, 42, 156, 293, 308, 317, 389, 478
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 37, 294
DraIII CACNNNGTG 1 cut(s) 430
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 461
Eco81I CCTNAGG 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 1 cut(s) 78
FaiI YATR 3 cut(s) 76, 339, 504
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 2 cut(s) 58, 390
FokI GGATG 1 cut(s) 446
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 2 cut(s) 58, 390
FspBI CTAG 1 cut(s) 117
GluI GCNGC 2 cut(s) 58, 390
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 9
HgaI GACGC 1 cut(s) 196
Hin1II CATG 1 cut(s) 78
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HinfI GANTC 1 cut(s) 175
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 382
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 215, 292
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 211, 437
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 290, 314, 398
HpyF3I CTNAG 2 cut(s) 37, 294
Hsp92II CATG 1 cut(s) 78
LmnI GCTCC 2 cut(s) 161, 475
LpnPI CCDG 9 cut(s) 114, 184, 192, 371, 437, 455, 464, 492, 540
Lsp1109I GCAGC 2 cut(s) 69, 376
LweI GCATC 2 cut(s) 388, 424
MaeI CTAG 1 cut(s) 117
MboII GAAGA 2 cut(s) 105, 257
MhlI GDGCHC 1 cut(s) 158
MlsI TGGCCA 1 cut(s) 9
MluCI AATT 5 cut(s) 133, 168, 354, 506, 547
MluNI TGGCCA 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 220, 226, 241
Mox20I TGGCCA 1 cut(s) 9
MscI TGGCCA 1 cut(s) 9
MseI TTAA 2 cut(s) 461, 550
Msp20I TGGCCA 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 4 cut(s) 97, 290, 314, 398
NcoI CCATGG 1 cut(s) 74
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 2 cut(s) 157, 477
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 59, 391
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 2 cut(s) 157, 477
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 461, 550
SatI GCNGC 2 cut(s) 58, 390
ScaI AGTACT 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 158
SetI ASST 6 cut(s) 237, 252, 303, 319, 432, 453
SfaNI GCATC 2 cut(s) 388, 424
SmlI CTYRAG 2 cut(s) 86, 393
SmoI CTYRAG 2 cut(s) 86, 393
Sse9I AATT 5 cut(s) 133, 168, 354, 506, 547
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 289
TasI AATT 5 cut(s) 133, 168, 354, 506, 547
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 2 cut(s) 461, 550
Tru9I TTAA 2 cut(s) 461, 550
TscAI CASTG 3 cut(s) 102, 444, 474
TseI GCWGC 2 cut(s) 57, 389
TspDTI ATGAA 1 cut(s) 519
TspRI CASTG 3 cut(s) 102, 444, 474
XapI RAATTY 1 cut(s) 506
XspI CTAG 1 cut(s) 117
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.