RLG00000020796

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
68872045 .. 68872667
623 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020796

Sequence Viewer

Length: 453 bp
ATGTCCGACGCTCTCTCCAGTCGCCGGCAACACCAACTGGTTCTCTCCGGCACCGGACCTCGGCCCGAGTTTCTTGATGACTTCGATGCTATCATCGTCCAGATCCTCTCATGGCTACCTGTCAAATCTTTGCTCCGTTTCCGAGAGCTTGATTTTCCGGTAATGAATTTACCACCGTTTGAATTTGAATTTGCAAGGATCGTTGGTACTTGCAGTGGCCTGATATGTCTACTACTTGAAGATGAATTACCTTCAACTGCTATTATGATATGGAACCCTTGTACTAGAGACTCCCAGGTATTACCACAACCTCCTATTACTCCTCAACACCTCAAGTTTTTCGGGTTCGGTTATGATTCCACTAGTGATGATTACAAGGTGATACTGGGTGGTTGGGATTCTAGTTCTAAATTTGATGTCTCTGTATATCGCTTGCCCGTTGGCAATATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

151

Amino Acids

16.94

Weight (kDa)

4.74

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 61 - 143 1.5e-08 F-box associated beta propeller domain
FBA_3 PF08268 66 - 143 9.4e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 229
AclWI GGATC 2 cut(s) 97, 206
AcsI RAATTY 4 cut(s) 166, 182, 188, 410
AfaI GTAC 2 cut(s) 208, 283
AfiI CCNNNNNNNGG 2 cut(s) 24, 60
AgsI TTSAA 4 cut(s) 182, 188, 239, 255
AhlI ACTAGT 1 cut(s) 362
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw26I GTCTC 2 cut(s) 282, 424
AlwI GGATC 2 cut(s) 97, 206
Ama87I CYCGRG 1 cut(s) 65
AoxI GGCC 2 cut(s) 62, 217
ApoI RAATTY 4 cut(s) 166, 182, 188, 410
AspS9I GGNCC 2 cut(s) 56, 63
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 65
AvaII GGWCC 1 cut(s) 56
BanI GGYRCC 1 cut(s) 50
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 282, 424
BcuI ACTAGT 1 cut(s) 362
BfaI CTAG 3 cut(s) 285, 363, 402
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 65
BmgT120I GGNCC 2 cut(s) 56, 63
BmiI GGNNCC 2 cut(s) 52, 275
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 395
BmsI GCATC 1 cut(s) 76
BmuI ACTGGG 1 cut(s) 395
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 2 cut(s) 59, 294
BsaWI WCCGGW 2 cut(s) 53, 157
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 24, 60
Bse118I RCCGGY 1 cut(s) 24
Bse1I ACTGG 3 cut(s) 18, 42, 390
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 59, 294
BseLI CCNNNNNNNGG 2 cut(s) 24, 60
BseNI ACTGG 3 cut(s) 18, 42, 390
BseRI GAGGAG 1 cut(s) 312
BshFI GGCC 2 cut(s) 64, 219
BshNI GGYRCC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 4 cut(s) 25, 48, 54, 158
BslI CCNNNNNNNGG 2 cut(s) 24, 60
BsmAI GTCTC 2 cut(s) 282, 424
BsnI GGCC 2 cut(s) 64, 219
BsoBI CYCGRG 1 cut(s) 65
Bsp143I GATC 2 cut(s) 102, 198
BspANI GGCC 2 cut(s) 64, 219
BspLI GGNNCC 2 cut(s) 52, 275
BspPI GGATC 2 cut(s) 97, 206
BspT107I GGYRCC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 24
BsrI ACTGG 3 cut(s) 18, 42, 390
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 59, 294
BssMI GATC 2 cut(s) 102, 198
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 26, 434
BstKTI GATC 2 cut(s) 105, 201
BstMAI GTCTC 2 cut(s) 282, 424
BstMBI GATC 2 cut(s) 102, 198
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 102
BstYI RGATCY 1 cut(s) 102
BsuRI GGCC 2 cut(s) 64, 219
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 26, 434
Cfr10I RCCGGY 1 cut(s) 24
Cfr13I GGNCC 2 cut(s) 56, 63
CseI GACGC 1 cut(s) 17
Csp6I GTAC 2 cut(s) 207, 282
CviAII CATG 1 cut(s) 111
CviJI RGCY 4 cut(s) 64, 115, 148, 219
CviKI_1 RGCY 4 cut(s) 64, 115, 148, 219
CviQI GTAC 2 cut(s) 207, 282
DpnI GATC 2 cut(s) 104, 200
DpnII GATC 2 cut(s) 102, 198
Eco47I GGWCC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 114
FaiI YATR 8 cut(s) 112, 226, 266, 271, 354, 427, 449, 451
FatI CATG 1 cut(s) 110
FblI GTMKAC 1 cut(s) 229
FspBI CTAG 3 cut(s) 285, 363, 402
HaeIII GGCC 2 cut(s) 64, 219
HapII CCGG 4 cut(s) 25, 48, 54, 158
HgaI GACGC 1 cut(s) 17
Hin1II CATG 1 cut(s) 114
HinfI GANTC 3 cut(s) 290, 356, 398
HpaII CCGG 4 cut(s) 25, 48, 54, 158
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 2 cut(s) 7, 143
Hpy188III TCNNGA 2 cut(s) 74, 100
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 1 cut(s) 261
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 2 cut(s) 194, 213
Hsp92II CATG 1 cut(s) 114
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 2 cut(s) 102, 198
LmnI GCTCC 1 cut(s) 138
LweI GCATC 1 cut(s) 76
MaeI CTAG 3 cut(s) 285, 363, 402
MalI GATC 2 cut(s) 104, 200
MboI GATC 2 cut(s) 102, 198
MboII GAAGA 1 cut(s) 251
MflI RGATCY 1 cut(s) 102
MluCI AATT 5 cut(s) 166, 182, 188, 245, 410
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 5 cut(s) 69, 116, 321, 333, 341
MroNI GCCGGC 1 cut(s) 24
MspI CCGG 4 cut(s) 25, 48, 54, 158
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
NaeI GCCGGC 1 cut(s) 26
NdeII GATC 2 cut(s) 102, 198
NgoMIV GCCGGC 1 cut(s) 24
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 2 cut(s) 52, 275
NmeAIII GCCGAG 1 cut(s) 40
PdiI GCCGGC 1 cut(s) 26
PfeI GAWTC 2 cut(s) 356, 398
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 52, 275
PspPI GGNCC 2 cut(s) 56, 63
PsuI RGATCY 1 cut(s) 102
RsaI GTAC 2 cut(s) 208, 283
RsaNI GTAC 2 cut(s) 207, 282
Sau3AI GATC 2 cut(s) 102, 198
Sau96I GGNCC 2 cut(s) 56, 63
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 296
SetI ASST 8 cut(s) 61, 121, 150, 253, 300, 313, 333, 381
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 56
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SpeI ACTAGT 1 cut(s) 362
Sse9I AATT 5 cut(s) 166, 182, 188, 245, 410
SspMI CTAG 3 cut(s) 285, 363, 402
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 84
TasI AATT 5 cut(s) 166, 182, 188, 245, 410
TatI WGTACW 1 cut(s) 281
TfiI GAWTC 2 cut(s) 356, 398
TscAI CASTG 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 179, 258
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 4 cut(s) 166, 182, 188, 410
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 3 cut(s) 285, 363, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.