RchiOBHm_Chr2g0154661

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000113
Physical Location & Seq
Reverse (-)
71753911 .. 71754591
681 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52364

Sequence Viewer

Length: 681 bp
ATGTCGGACGCACTCTGCACTCGGCTGCAGCAACAAGTAGTTCTCTCCGGTACCGCACCTAGCTCCGAGTCTGTTGATTTAGAATGTGTCATTGTCGACATCCTCTCACGGCTACCGGCCAGATCTCTGCTCCGATTCCGCTGTGTGTGCAAAGCATGGCGGGCCTTGATCTCCGATCCTTACTTCATCAGAAAGCACCTCAGCCGCATCAACACCAAGATCAGCACCAGCTATTGTCTCCTACTCAAAGAAAAAATTTTCCGATGCGCAGAGTATGAAGAAATATTGAAGTGTTTGAGCCATGATGGTCCTCTTCCGAGCAGAAGGCTTCATTTTCCGGTACTTGATTTTCCGGTCCTCTTCCGCCGAAGGTTTGATATTCATAGTTTTTTTATCGTTGGCAGTTGCAATGGCTTGATATGTCTAATGGTTGGTATTGATGCTAGAGAAACCTACACCTTTATGTTATGGAATCCTTGTACTGGAGAATCACAGGTCCTACCACAAACTCCCCTTCATTCCTTCGAACGATGTTTCTGGGGGTTCAGTTATGATTCAACCACTGATGATTACAAAGTAATACTGGGAAGCTATAAATCTGGTTATGAATTTGTTGTTGTCTTTATGCTAAAAGGGGGTTCATGGAGGAAGCTTGAAAGGCTCAACAAGTATCACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

226

Amino Acids

26.24

Weight (kDa)

8.86

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 64 2e-09 F-box domain
F-box-like PF12937 30 - 65 7.5e-09 F-box-like
FBA_3 PF08268 128 - 225 4.4e-11 F-box associated beta propeller domain
FBA_1 PF07734 131 - 220 2e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 268
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AccI GTMKAC 1 cut(s) 96
AciI CCGC 5 cut(s) 54, 139, 160, 205, 364
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 255, 608
AfaI GTAC 3 cut(s) 52, 342, 481
AfiI CCNNNNNNNGG 1 cut(s) 482
AgsI TTSAA 3 cut(s) 289, 558, 656
AluBI AGCT 4 cut(s) 63, 231, 591, 652
AluI AGCT 4 cut(s) 63, 231, 591, 652
Alw26I GTCTC 1 cut(s) 242
AlwI GGATC 1 cut(s) 170
AoxI GGCC 2 cut(s) 117, 162
ApeKI GCWGC 2 cut(s) 25, 28
ApoI RAATTY 2 cut(s) 255, 608
Asp718I GGTACC 1 cut(s) 50
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 4 cut(s) 162, 308, 355, 496
AsuII TTCGAA 1 cut(s) 525
AvaII GGWCC 3 cut(s) 308, 355, 496
BanI GGYRCC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 12, 40
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 60, 444, 679
BfmI CTRYAG 1 cut(s) 26
BglII AGATCT 1 cut(s) 122
BisI GCNGC 3 cut(s) 26, 29, 205
BlsI GCNGC 3 cut(s) 27, 30, 206
Bme18I GGWCC 3 cut(s) 308, 355, 496
BmgT120I GGNCC 4 cut(s) 162, 308, 355, 496
BmiI GGNNCC 1 cut(s) 52
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 3 cut(s) 216, 254, 430
BmuI ACTGGG 1 cut(s) 593
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 525
BsaWI WCCGGW 3 cut(s) 47, 337, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 482
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 2 cut(s) 487, 588
Bse3DI GCAATG 1 cut(s) 415
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 1 cut(s) 482
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 487, 588
BseXI GCAGC 2 cut(s) 12, 40
BshFI GGCC 2 cut(s) 119, 164
BshNI GGYRCC 1 cut(s) 50
BsiSI CCGG 4 cut(s) 48, 116, 338, 353
BslI CCNNNNNNNGG 1 cut(s) 482
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 2 cut(s) 119, 164
Bsp119I TTCGAA 1 cut(s) 525
Bsp143I GATC 4 cut(s) 122, 168, 175, 219
BspACI CCGC 5 cut(s) 54, 139, 160, 205, 364
BspANI GGCC 2 cut(s) 119, 164
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 170
BspT104I TTCGAA 1 cut(s) 525
BspT107I GGYRCC 1 cut(s) 50
BsrDI GCAATG 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 2 cut(s) 487, 588
BssAI RCCGGY 1 cut(s) 115
BssMI GATC 4 cut(s) 122, 168, 175, 219
Bst6I CTCTTC 2 cut(s) 318, 365
BstBI TTCGAA 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 99
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 4 cut(s) 125, 171, 178, 222
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 4 cut(s) 122, 168, 175, 219
BstMWI GCNNNNNNNGC 3 cut(s) 147, 161, 658
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 12, 40
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BsuRI GGCC 2 cut(s) 119, 164
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 4 cut(s) 162, 308, 355, 496
CseI GACGC 1 cut(s) 17
Csp6I GTAC 3 cut(s) 51, 341, 480
CviAII CATG 3 cut(s) 156, 302, 642
CviQI GTAC 3 cut(s) 51, 341, 480
DdeI CTNAG 1 cut(s) 200
DpnI GATC 4 cut(s) 124, 170, 177, 221
DpnII GATC 4 cut(s) 122, 168, 175, 219
EaeI YGGCCR 1 cut(s) 117
Eam1104I CTCTTC 2 cut(s) 318, 365
EarI CTCTTC 2 cut(s) 318, 365
EciI GGCGGA 1 cut(s) 353
Eco47I GGWCC 3 cut(s) 308, 355, 496
EcoO109I RGGNCCY 1 cut(s) 496
FaeI CATG 3 cut(s) 159, 305, 645
FatI CATG 3 cut(s) 155, 301, 641
FauI CCCGC 1 cut(s) 153
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 26, 29, 205
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 26, 29, 205
FspBI CTAG 3 cut(s) 60, 444, 679
FspI TGCGCA 1 cut(s) 268
GlaI GCGC 1 cut(s) 268
GluI GCNGC 3 cut(s) 26, 29, 205
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 2 cut(s) 119, 164
HapII CCGG 4 cut(s) 48, 116, 338, 353
HgaI GACGC 1 cut(s) 17
HhaI GCGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 159, 305, 645
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 5 cut(s) 68, 135, 472, 488, 554
HpaII CCGG 4 cut(s) 48, 116, 338, 353
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 7 cut(s) 7, 67, 134, 175, 191, 263, 318
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 4 cut(s) 318, 363, 524, 532
HpyCH4V TGCA 4 cut(s) 18, 28, 150, 408
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 161, 658
HpyF3I CTNAG 1 cut(s) 200
Hsp92II CATG 3 cut(s) 159, 305, 645
HspAI GCGC 1 cut(s) 267
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 4 cut(s) 122, 168, 175, 219
LmnI GCTCC 2 cut(s) 68, 135
Lsp1109I GCAGC 2 cut(s) 12, 40
LweI GCATC 3 cut(s) 216, 254, 430
MaeI CTAG 3 cut(s) 60, 444, 679
MalI GATC 4 cut(s) 124, 170, 177, 221
MboI GATC 4 cut(s) 122, 168, 175, 219
MboII GAAGA 3 cut(s) 290, 305, 352
MflI RGATCY 1 cut(s) 122
MluCI AATT 2 cut(s) 255, 608
MlyI GAGTC 1 cut(s) 77
MnlI CCTC 5 cut(s) 113, 209, 321, 368, 639
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 4 cut(s) 48, 116, 338, 353
MwoI GCNNNNNNNGC 3 cut(s) 147, 161, 658
NdeII GATC 4 cut(s) 122, 168, 175, 219
NlaIII CATG 3 cut(s) 159, 305, 645
NlaIV GGNNCC 1 cut(s) 52
NsbI TGCGCA 1 cut(s) 268
NspV TTCGAA 1 cut(s) 525
PfeI GAWTC 4 cut(s) 135, 472, 488, 554
PkrI GCNGC 3 cut(s) 27, 30, 206
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PpuMI RGGWCCY 1 cut(s) 496
Psp5II RGGWCCY 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 4 cut(s) 162, 308, 355, 496
PspPPI RGGWCCY 1 cut(s) 496
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 3 cut(s) 52, 342, 481
RsaNI GTAC 3 cut(s) 51, 341, 480
RseI CAYNNNNRTG 1 cut(s) 461
SalI GTCGAC 1 cut(s) 95
SatI GCNGC 3 cut(s) 26, 29, 205
Sau3AI GATC 4 cut(s) 122, 168, 175, 219
Sau96I GGNCC 4 cut(s) 162, 308, 355, 496
SchI GAGTC 1 cut(s) 77
SfaNI GCATC 3 cut(s) 216, 254, 430
SfcI CTRYAG 1 cut(s) 26
SfuI TTCGAA 1 cut(s) 525
SinI GGWCC 3 cut(s) 308, 355, 496
SmiMI CAYNNNNRTG 1 cut(s) 461
Sse9I AATT 2 cut(s) 255, 608
SsiI CCGC 5 cut(s) 54, 139, 160, 205, 364
SspI AATATT 1 cut(s) 285
SspMI CTAG 3 cut(s) 60, 444, 679
TaqI TCGA 2 cut(s) 96, 525
TasI AATT 2 cut(s) 255, 608
TatI WGTACW 1 cut(s) 479
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 4 cut(s) 135, 472, 488, 554
TscAI CASTG 1 cut(s) 568
TseI GCWGC 2 cut(s) 25, 28
TspDTI ATGAA 7 cut(s) 175, 291, 320, 371, 506, 621, 630
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 3 cut(s) 308, 355, 496
XapI RAATTY 2 cut(s) 255, 608
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 3 cut(s) 60, 444, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.