pycom09g05450

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
4067501 .. 4068025
525 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05450.1

Sequence Viewer

Length: 525 bp
ATGGAAGACGACATCCTTGCAGACATACTATCAAAACTACCAGCCAAATCTTTATTACGATTCTGCTGTGTCTGCAAGTCATGGCGTGCTTTAATCTCCAGTTCCTATTTTATTACGAAGCATTGCAGTCGCTCATCACTGAAAGGCATCAACACCAACACTGCCTTAAACATCATTTATTCAGTCAATCCTCTCCGATACCTAGACAACAATGCACTATTACACCATAAGGATGGCGACGGTGTTGTTGCGAGAACAAACCCTAGGCGTATTTCCTCTCATTTGCAATTTGTGGGTTCGTGCAATGGGCTTATATGTTTTCTTTCATCAGACCACACTTCATCTTATGGAACCCTTGTACAAATGGCATCAACAAGTTTCCGTTCATACCTAGTTGTATCGATTTCAGTTGGCAGCGGACATTTCATGGGTTATGATTCCACCACTCAAGATTACAAGGTCGTATCGTGCGCGAAATCTCAAACAGAAGTCGTTGTGGCCGTCTATGCACTAAAAACCGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

175

Amino Acids

19.06

Weight (kDa)

8.99

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 38 7.5e-11 F-box domain
F-box-like PF12937 3 - 42 1.1e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 473
AciI CCGC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 498
AfaI GTAC 1 cut(s) 360
AgeI ACCGGT 1 cut(s) 518
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 1 cut(s) 414
AsiGI ACCGGT 1 cut(s) 518
AspA2I CCTAGG 1 cut(s) 263
AspLEI GCGC 1 cut(s) 473
AvrII CCTAGG 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 1 cut(s) 426
BccI CCATC 1 cut(s) 227
BceAI ACGGC 1 cut(s) 485
BcgI CGANNNNNNTGC 3 cut(s) 33, 110, 144
BfaI CTAG 3 cut(s) 203, 264, 392
BisI GCNGC 1 cut(s) 415
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 1 cut(s) 416
BmiI GGNNCC 1 cut(s) 352
BmsI GCATC 2 cut(s) 156, 377
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 1 cut(s) 82
BpuEI CTTGAG 1 cut(s) 432
Bsa29I ATCGAT 1 cut(s) 401
BsaJI CCNNGG 1 cut(s) 263
BsaWI WCCGGW 1 cut(s) 518
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 2 cut(s) 121, 310
BseCI ATCGAT 1 cut(s) 401
BseDI CCNNGG 1 cut(s) 263
BseGI GGATG 2 cut(s) 12, 238
BseMI GCAATG 2 cut(s) 121, 310
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 473
BshFI GGCC 1 cut(s) 500
BshTI ACCGGT 1 cut(s) 518
BshVI ATCGAT 1 cut(s) 401
BsiSI CCGG 1 cut(s) 519
BsnI GGCC 1 cut(s) 500
Bsp1407I TGTACA 1 cut(s) 358
BspACI CCGC 1 cut(s) 417
BspANI GGCC 1 cut(s) 500
BspDI ATCGAT 1 cut(s) 401
BspFNI CGCG 1 cut(s) 473
BspLI GGNNCC 1 cut(s) 352
BsrDI GCAATG 2 cut(s) 121, 310
BsrFI RCCGGY 1 cut(s) 518
BsrGI TGTACA 1 cut(s) 358
BsrI ACTGG 1 cut(s) 99
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 242
BstAUI TGTACA 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 87
BstF5I GGATG 2 cut(s) 12, 238
BstFNI CGCG 1 cut(s) 473
BstHHI GCGC 1 cut(s) 473
BstMWI GCNNNNNNNGC 2 cut(s) 72, 506
BstUI CGCG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 426
BstV2I GAAGAC 1 cut(s) 12
BstXI CCANNNNNNTGG 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 401
BsuRI GGCC 1 cut(s) 500
BsuTUI ATCGAT 1 cut(s) 401
BtsCI GGATG 2 cut(s) 12, 238
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 2 cut(s) 137, 159
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 473
Cfr10I RCCGGY 1 cut(s) 518
ClaI ATCGAT 1 cut(s) 401
Csp6I GTAC 1 cut(s) 359
CspAI ACCGGT 1 cut(s) 518
CviAII CATG 2 cut(s) 81, 427
CviJI RGCY 3 cut(s) 44, 310, 500
CviKI_1 RGCY 3 cut(s) 44, 310, 500
CviQI GTAC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaeI CATG 2 cut(s) 84, 430
FatI CATG 2 cut(s) 80, 426
Fnu4HI GCNGC 1 cut(s) 415
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 1 cut(s) 415
FspBI CTAG 3 cut(s) 203, 264, 392
GlaI GCGC 1 cut(s) 472
GluI GCNGC 1 cut(s) 415
GsuI CTGGAG 1 cut(s) 82
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 519
HhaI GCGC 1 cut(s) 473
Hin1II CATG 2 cut(s) 84, 430
Hin6I GCGC 1 cut(s) 471
HinP1I GCGC 1 cut(s) 471
HinfI GANTC 2 cut(s) 60, 437
HpaII CCGG 1 cut(s) 519
Hpy188I TCNGA 2 cut(s) 197, 331
Hpy188III TCNNGA 1 cut(s) 449
Hpy99I CGWCG 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 7 cut(s) 20, 75, 126, 215, 286, 303, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 506
Hsp92II CATG 2 cut(s) 84, 430
HspAI GCGC 1 cut(s) 471
LpnPI CCDG 2 cut(s) 54, 112
Lsp1109I GCAGC 1 cut(s) 426
LweI GCATC 2 cut(s) 156, 377
MaeI CTAG 3 cut(s) 203, 264, 392
MboII GAAGA 1 cut(s) 17
MluCI AATT 1 cut(s) 287
MnlI CCTC 2 cut(s) 201, 286
MseI TTAA 2 cut(s) 92, 167
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 417
MspI CCGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 72, 506
NlaIII CATG 2 cut(s) 84, 430
NlaIV GGNNCC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfeI GAWTC 2 cut(s) 60, 437
PinAI ACCGGT 1 cut(s) 518
PkrI GCNGC 1 cut(s) 416
PspN4I GGNNCC 1 cut(s) 352
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 2 cut(s) 92, 167
SatI GCNGC 1 cut(s) 415
SetI ASST 3 cut(s) 204, 393, 462
SfaNI GCATC 2 cut(s) 156, 377
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 447
SmoI CTYRAG 1 cut(s) 447
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 417
SspMI CTAG 3 cut(s) 203, 264, 392
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 401
TasI AATT 1 cut(s) 287
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 2 cut(s) 60, 437
Tru1I TTAA 2 cut(s) 92, 167
Tru9I TTAA 2 cut(s) 92, 167
TscAI CASTG 2 cut(s) 144, 166
TseI GCWGC 1 cut(s) 414
TspDTI ATGAA 4 cut(s) 315, 330, 375, 415
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 2 cut(s) 144, 166
XmaJI CCTAGG 1 cut(s) 263
XspI CTAG 3 cut(s) 203, 264, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.