Rmu_co8210288.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8210288.1
OG0000113
Physical Location & Seq
Reverse (-)
2 .. 534
533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8210288.1_g000001.1.cds

Sequence Viewer

Length: 533 bp
atggcggaggaccgcggtagtggtgatgtggttaagcgaattcggagtgactacttcgatgaagatatagtttccgagatactggcaaggcttccggtcagatctttacttcgatttcgctgtgtgtgcaaatcatggcgtgctctgattgcggattcgcactttgtgaagaaacacttacactcgagctacgcagagagaggattcggcgacaacaactccaggcttctgtttctaatgaatcctccgctatcaatagactacgaagcattgaaggatctgaaggagggtggtgatggttggtttgcaagaagagagctccactttccggtaaagcttgctgcttaccaaagaaataggattttgggttcttgcaatgggttgatttgtgttgaatgccaagcggtggggattgtcgtatggaacccttgcaccggagaacacaaggtgctaccaaatcctcctacagattgccatccttcagatttttatgggtttggctatgactccacaactgatgattacaagatcat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

177

Amino Acids

20.13

Weight (kDa)

6.58

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 1 cut(s) 15
AciI CCGC 6 cut(s) 5, 13, 15, 152, 248, 404
AclWI GGATC 1 cut(s) 285
AcsI RAATTY 1 cut(s) 39
AcuI CTGAAG 2 cut(s) 302, 465
AdeI CACNNNGTG 2 cut(s) 166, 448
AfiI CCNNNNNNNGG 3 cut(s) 328, 406, 434
AgsI TTSAA 2 cut(s) 274, 395
AjnI CCWGG 1 cut(s) 221
AloI GAACNNNNNNTCC 2 cut(s) 352, 384
AluBI AGCT 3 cut(s) 189, 319, 337
AluI AGCT 3 cut(s) 189, 319, 337
Alw21I GWGCWC 2 cut(s) 145, 321
AlwI GGATC 1 cut(s) 285
Ama87I CYCGRG 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 2 cut(s) 35, 305
AvaI CYCGRG 1 cut(s) 184
AvaII GGWCC 1 cut(s) 10
BanII GRGCYC 1 cut(s) 321
Bbv12I GWGCWC 2 cut(s) 145, 321
BbvI GCAGC 1 cut(s) 328
BccI CCATC 2 cut(s) 290, 483
BciT130I CCWGG 1 cut(s) 223
BfmI CTRYAG 1 cut(s) 465
BglII AGATCT 1 cut(s) 101
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 223
Bme18I GGWCC 1 cut(s) 10
BmeT110I CYCGRG 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 425
BmrFI CCNGG 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 205
BsaBI GATNNNNATC 1 cut(s) 474
BsaJI CCNNGG 1 cut(s) 13
BsaWI WCCGGW 3 cut(s) 94, 328, 434
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 406, 434
Bse1I ACTGG 1 cut(s) 87
Bse3DI GCAATG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 328, 406, 434
BseMI GCAATG 1 cut(s) 382
BseNI ACTGG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 328
Bsh1236I CGCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 145, 321
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 3 cut(s) 95, 329, 435
BslI CCNNNNNNNGG 3 cut(s) 328, 406, 434
BsmI GAATGC 1 cut(s) 401
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 2 cut(s) 145, 321
Bsp143I GATC 3 cut(s) 101, 277, 528
BspACI CCGC 6 cut(s) 5, 13, 15, 152, 248, 404
BspFNI CGCG 1 cut(s) 15
BspLI GGNNCC 1 cut(s) 425
BspPI GGATC 1 cut(s) 285
BsrDI GCAATG 1 cut(s) 382
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 3 cut(s) 101, 277, 528
Bst2UI CCWGG 1 cut(s) 223
Bst6I CTCTTC 1 cut(s) 307
BstC8I GCNNGC 2 cut(s) 141, 339
BstDSI CCRYGG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 3 cut(s) 104, 280, 531
BstMBI GATC 3 cut(s) 101, 277, 528
BstMWI GCNNNNNNNGC 2 cut(s) 126, 149
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 465
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 328
BstX2I RGATCY 2 cut(s) 101, 277
BstYI RGATCY 2 cut(s) 101, 277
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 141, 339
Cfr13I GGNCC 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 16
CviAII CATG 1 cut(s) 135
CviJI RGCY 6 cut(s) 91, 189, 226, 319, 337, 501
CviKI_1 RGCY 6 cut(s) 91, 189, 226, 319, 337, 501
DpnI GATC 3 cut(s) 103, 279, 530
DpnII GATC 3 cut(s) 101, 277, 528
DraIII CACNNNGTG 2 cut(s) 166, 448
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 319
Eco24I GRGCYC 1 cut(s) 321
Eco47I GGWCC 1 cut(s) 10
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 2 cut(s) 302, 465
Eco88I CYCGRG 1 cut(s) 184
EcoICRI GAGCTC 1 cut(s) 319
EcoRI GAATTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 221
EcoT38I GRGCYC 1 cut(s) 321
FaeI CATG 1 cut(s) 138
FaiI YATR 5 cut(s) 68, 136, 421, 492, 504
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FatI CATG 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 462
FriOI GRGCYC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 205
HapII CCGG 3 cut(s) 95, 329, 435
Hin1II CATG 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 335
HinfI GANTC 4 cut(s) 155, 204, 241, 506
HpaII CCGG 3 cut(s) 95, 329, 435
HphI GGTGA 2 cut(s) 35, 305
Hpy188I TCNGA 6 cut(s) 45, 76, 101, 147, 282, 484
HpyAV CCTTC 3 cut(s) 268, 277, 489
HpyCH4V TGCA 4 cut(s) 129, 308, 375, 432
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 149
Hsp92II CATG 1 cut(s) 138
KspI CCGCGG 1 cut(s) 16
Kzo9I GATC 3 cut(s) 101, 277, 528
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 6 cut(s) 68, 108, 208, 235, 342, 448
Lsp1109I GCAGC 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 47
MalI GATC 3 cut(s) 103, 279, 530
MboI GATC 3 cut(s) 101, 277, 528
MboII GAAGA 3 cut(s) 74, 181, 324
MflI RGATCY 2 cut(s) 101, 277
MhlI GDGCHC 2 cut(s) 145, 321
MluCI AATT 1 cut(s) 39
MlyI GAGTC 1 cut(s) 500
MnlI CCTC 4 cut(s) 194, 255, 280, 471
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 3 cut(s) 95, 329, 435
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 401
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 2 cut(s) 126, 149
NdeII GATC 3 cut(s) 101, 277, 528
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 184
PctI GAATGC 1 cut(s) 401
PfeI GAWTC 3 cut(s) 155, 204, 241
PflMI CCANNNNNTGG 1 cut(s) 406
PkrI GCNGC 1 cut(s) 343
PleI GAGTC 1 cut(s) 500
PpsI GAGTC 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 425
PspPI GGNCC 1 cut(s) 10
PspXI VCTCGAGB 1 cut(s) 184
PsuI RGATCY 2 cut(s) 101, 277
SacI GAGCTC 1 cut(s) 321
SacII CCGCGG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 101, 277, 528
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 500
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 2 cut(s) 145, 321
SetI ASST 4 cut(s) 191, 321, 339, 450
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 184
Sfr303I CCGCGG 1 cut(s) 16
SgrBI CCGCGG 1 cut(s) 16
SinI GGWCC 1 cut(s) 10
SlaI CTCGAG 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 39
SsiI CCGC 6 cut(s) 5, 13, 15, 152, 248, 404
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 221
TaqI TCGA 3 cut(s) 57, 112, 185
TasI AATT 1 cut(s) 39
TfiI GAWTC 3 cut(s) 155, 204, 241
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 47
TseI GCWGC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 47
TspDTI ATGAA 2 cut(s) 75, 254
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 10
XapI RAATTY 1 cut(s) 39
XhoI CTCGAG 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.