FvH4_6g40010

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Reverse (-)
31595849 .. 31597916
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40010.t1

Sequence Viewer

Length: 1002 bp
ATGGATCCTCCCTTGTTCTTGGACTTGAAAGCTTTGGAAAATATCAAAAATGGTGATGATGTTTGGTCTGCGGTCACTGAGCTGGATTTTCCGGTATGGGAAACCATCCCCGAATCTGGTTTTAGACGTGTTGTTGGGCTTAAAGATAGCTACAAAAAATTTAATGGATTTGGGTATGATTCTGCGACTGACGACTACAAGGTGATACGGGGGTTCGCCTATGATGCAAATGGTGCTAAGAAATTCATGATTCAAATATTTGCACTGAAAACAGGTTCATGGAGGACTGTCAAAGATATTGATTATGTTGACCTGACAAAGATGCAGGGATTGTTTTTAAACGGAGCTTTGCATTGGTTAGGGGATCTACCTGAACCCGATGGGGACACAAGAATTTTGTCCTTTGATTTAGGGGCAGAGAAATTTCAGGAGACGATTCAATTACCCTATGCTGACCGGTTTACTCATCTCTTGATTCATAGAAATTGTCTCTGCGCATGCAGTTGCCCAACTGAATCGATCAATATATGGATGATGAAAGAATATGGAGTTAAGGAATCCTGGACTGAAATAGTACAATTTTCTCTGGAGAATTATGTACTGAATTGTGTACTGGATCCTGATGAATTTAATCTCCTTGTCAGGCCTGTGTGCATTTTGGAGAATGGTGTATTTTTGATTGACAGGATGGGTGGTCGCAAACCCGGTAATGTTGAACGTGTCGTGGTATTTTCTAATCTACAGGAGAAGACATTCGAGCATTTTGTTAAGGTCACGCAGGACTCGGACTTTACAACATTCATTTACCAAGAGACATTAGTTTCACCAGATATCCCCACAAACAAGACCAATATTCACCAGATTCCTCCTCGCCTCCGCATCTTACCGCCCGATTCCTCCTCGCCGCTTCCTCCTCGCCTCCGCATCTCACCGCCTGCTTCCTCCTCGCCGCTTCCTCCGTCAGGCAAGATCATTTTTTCTTTGTTCGTTATATCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

334

Amino Acids

37.79

Weight (kDa)

5.17

Isoelectric Point (pI)

43.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 49 - 229 9.7e-22 F-box associated beta propeller domain
FBA_3 PF08268 52 - 202 6.2e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 496
AciI CCGC 7 cut(s) 71, 877, 887, 905, 922, 932, 950
AclWI GGATC 4 cut(s) 12, 372, 611, 624
AcsI RAATTY 5 cut(s) 158, 242, 393, 422, 626
AfaI GTAC 3 cut(s) 576, 600, 612
AfiI CCNNNNNNNGG 2 cut(s) 116, 962
AflIII ACRYGT 2 cut(s) 127, 718
AgeI ACCGGT 1 cut(s) 456
AgsI TTSAA 4 cut(s) 28, 254, 440, 716
AjiI CACGTC 1 cut(s) 128
AjnI CCWGG 1 cut(s) 560
AluBI AGCT 4 cut(s) 32, 82, 150, 347
AluI AGCT 4 cut(s) 32, 82, 150, 347
Alw26I GTCTC 3 cut(s) 425, 494, 806
AlwI GGATC 4 cut(s) 12, 372, 611, 624
AoxI GGCC 1 cut(s) 644
ApoI RAATTY 5 cut(s) 158, 242, 393, 422, 626
AsiGI ACCGGT 1 cut(s) 456
Asp700I GAANNNNTTC 1 cut(s) 752
AspLEI GCGC 1 cut(s) 497
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 5 cut(s) 65, 214, 816, 848, 921
BaeI ACNNNNGTAYC 2 cut(s) 197, 230
BamHI GGATCC 2 cut(s) 4, 616
BbsI GAAGAC 1 cut(s) 755
BccI CCATC 3 cut(s) 113, 374, 682
BciT130I CCWGG 1 cut(s) 562
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 3 cut(s) 425, 494, 806
BfmI CTRYAG 1 cut(s) 740
BisI GCNGC 2 cut(s) 905, 950
BlsI GCNGC 2 cut(s) 906, 951
Bme1390I CCNGG 2 cut(s) 562, 705
BmgBI CACGTC 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 6, 618
BmrFI CCNGG 2 cut(s) 562, 705
BmsI GCATC 4 cut(s) 214, 312, 888, 933
BpiI GAAGAC 1 cut(s) 755
BpmI CTGGAG 1 cut(s) 608
BpuMI CCSGG 1 cut(s) 705
Bsa29I ATCGAT 1 cut(s) 518
BsaWI WCCGGW 2 cut(s) 91, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 116, 962
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 562
BseCI ATCGAT 1 cut(s) 518
BseGI GGATG 3 cut(s) 105, 537, 693
BseLI CCNNNNNNNGG 2 cut(s) 116, 962
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 4 cut(s) 858, 889, 903, 934
BshFI GGCC 1 cut(s) 646
BshTI ACCGGT 1 cut(s) 456
BshVI ATCGAT 1 cut(s) 518
BsiSI CCGG 3 cut(s) 92, 457, 705
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 116, 962
BsmAI GTCTC 3 cut(s) 425, 494, 806
BsmBI CGTCTC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 1 cut(s) 646
Bsp143I GATC 5 cut(s) 4, 364, 519, 616, 969
BspACI CCGC 7 cut(s) 71, 877, 887, 905, 922, 932, 950
BspANI GGCC 1 cut(s) 646
BspCNI CTCAG 1 cut(s) 70
BspDI ATCGAT 1 cut(s) 518
BspHI TCATGA 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 6, 618
BspPI GGATC 4 cut(s) 12, 372, 611, 624
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 1 cut(s) 618
BssAI RCCGGY 1 cut(s) 456
BssMI GATC 5 cut(s) 4, 364, 519, 616, 969
Bst2UI CCWGG 1 cut(s) 562
Bst4CI ACNGT 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 499, 936
BstDEI CTNAG 2 cut(s) 78, 237
BstENI CCTNNNNNAGG 1 cut(s) 960
BstF5I GGATG 3 cut(s) 105, 537, 693
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 5 cut(s) 7, 367, 522, 619, 972
BstMAI GTCTC 3 cut(s) 425, 494, 806
BstMBI GATC 5 cut(s) 4, 364, 519, 616, 969
BstMWI GCNNNNNNNGC 2 cut(s) 224, 233
BstNI CCWGG 1 cut(s) 562
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 560, 703
BstSFI CTRYAG 1 cut(s) 740
BstV2I GAAGAC 1 cut(s) 755
BstX2I RGATCY 3 cut(s) 4, 364, 616
BstYI RGATCY 3 cut(s) 4, 364, 616
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 1 cut(s) 646
BsuTUI ATCGAT 1 cut(s) 518
BtrI CACGTC 1 cut(s) 128
BtsCI GGATG 3 cut(s) 105, 537, 693
BtsIMutI CAGTG 2 cut(s) 75, 263
Cac8I GCNNGC 2 cut(s) 499, 936
CciI TCATGA 1 cut(s) 246
CfoI GCGC 1 cut(s) 497
Cfr10I RCCGGY 1 cut(s) 456
ClaI ATCGAT 1 cut(s) 518
Csp6I GTAC 3 cut(s) 575, 599, 611
CspAI ACCGGT 1 cut(s) 456
CviAII CATG 3 cut(s) 247, 279, 498
CviJI RGCY 6 cut(s) 32, 82, 139, 150, 347, 646
CviKI_1 RGCY 6 cut(s) 32, 82, 139, 150, 347, 646
CviQI GTAC 3 cut(s) 575, 599, 611
DdeI CTNAG 2 cut(s) 78, 237
DpnI GATC 5 cut(s) 6, 366, 521, 618, 971
DpnII GATC 5 cut(s) 4, 364, 519, 616, 969
DraI TTTAAA 1 cut(s) 339
Eco147I AGGCCT 1 cut(s) 646
Eco32I GATATC 1 cut(s) 832
EcoNI CCTNNNNNAGG 1 cut(s) 960
EcoRII CCWGG 1 cut(s) 560
EcoRV GATATC 1 cut(s) 832
Esp3I CGTCTC 1 cut(s) 425
FaeI CATG 3 cut(s) 250, 282, 501
FaqI GGGAC 1 cut(s) 398
FatI CATG 3 cut(s) 246, 278, 497
Fnu4HI GCNGC 2 cut(s) 905, 950
FokI GGATG 3 cut(s) 92, 544, 700
Fsp4HI GCNGC 2 cut(s) 905, 950
FspI TGCGCA 1 cut(s) 496
GlaI GCGC 1 cut(s) 496
GluI GCNGC 2 cut(s) 905, 950
GsuI CTGGAG 1 cut(s) 608
HaeIII GGCC 1 cut(s) 646
HapII CCGG 3 cut(s) 92, 457, 705
HhaI GCGC 1 cut(s) 497
Hin1II CATG 3 cut(s) 250, 282, 501
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 30
HpaII CCGG 3 cut(s) 92, 457, 705
HphI GGTGA 5 cut(s) 65, 214, 816, 848, 921
Hpy166II GTNNAC 3 cut(s) 310, 462, 611
Hpy188I TCNGA 1 cut(s) 787
Hpy188III TCNNGA 5 cut(s) 247, 428, 472, 587, 620
Hpy8I GTNNAC 3 cut(s) 310, 462, 611
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 2 cut(s) 127, 718
HpyCH4V TGCA 6 cut(s) 227, 263, 325, 352, 501, 654
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 233
HpyF3I CTNAG 2 cut(s) 78, 237
HpySE526I ACGT 2 cut(s) 127, 718
Hsp92II CATG 3 cut(s) 250, 282, 501
HspAI GCGC 1 cut(s) 495
Kzo9I GATC 5 cut(s) 4, 364, 519, 616, 969
LmnI GCTCC 1 cut(s) 344
LweI GCATC 4 cut(s) 214, 312, 888, 933
MaeII ACGT 2 cut(s) 127, 718
MaeIII GTNAC 2 cut(s) 73, 772
MalI GATC 5 cut(s) 6, 366, 521, 618, 971
MboI GATC 5 cut(s) 4, 364, 519, 616, 969
MboII GAAGA 1 cut(s) 760
MflI RGATCY 3 cut(s) 4, 364, 616
MlyI GAGTC 1 cut(s) 776
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 6 cut(s) 141, 162, 338, 552, 630, 768
MspI CCGG 3 cut(s) 92, 457, 705
MspR9I CCNGG 2 cut(s) 562, 705
MvaI CCWGG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 224, 233
NciI CCSGG 1 cut(s) 705
NdeII GATC 5 cut(s) 4, 364, 519, 616, 969
NlaIII CATG 3 cut(s) 250, 282, 501
NlaIV GGNNCC 2 cut(s) 6, 618
NmuCI GTSAC 2 cut(s) 73, 772
NsbI TGCGCA 1 cut(s) 496
NspI RCATGY 1 cut(s) 501
PaeI GCATGC 1 cut(s) 501
PagI TCATGA 1 cut(s) 246
PceI AGGCCT 1 cut(s) 646
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 9 cut(s) 113, 179, 250, 436, 475, 515, 557, 862, 893
PfoI TCCNGGA 1 cut(s) 560
PinAI ACCGGT 1 cut(s) 456
PkrI GCNGC 2 cut(s) 906, 951
PleI GAGTC 1 cut(s) 776
PpsI GAGTC 1 cut(s) 776
Psp6I CCWGG 1 cut(s) 560
PspGI CCWGG 1 cut(s) 560
PspN4I GGNNCC 2 cut(s) 6, 618
PsuI RGATCY 3 cut(s) 4, 364, 616
RsaI GTAC 3 cut(s) 576, 600, 612
RsaNI GTAC 3 cut(s) 575, 599, 611
SaqAI TTAA 6 cut(s) 141, 162, 338, 552, 630, 768
SatI GCNGC 2 cut(s) 905, 950
Sau3AI GATC 5 cut(s) 4, 364, 519, 616, 969
SchI GAGTC 1 cut(s) 776
ScrFI CCNGG 2 cut(s) 562, 705
SfaNI GCATC 4 cut(s) 214, 312, 888, 933
SfcI CTRYAG 1 cut(s) 740
SphI GCATGC 1 cut(s) 501
SseBI AGGCCT 1 cut(s) 646
SsiI CCGC 7 cut(s) 71, 877, 887, 905, 922, 932, 950
SspI AATATT 2 cut(s) 258, 853
StuI AGGCCT 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 560, 703
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 2 cut(s) 130, 721
TaqI TCGA 2 cut(s) 518, 756
TatI WGTACW 3 cut(s) 574, 598, 610
TauI GCSGC 2 cut(s) 907, 952
TfiI GAWTC 9 cut(s) 113, 179, 250, 436, 475, 515, 557, 862, 893
Tru1I TTAA 6 cut(s) 141, 162, 338, 552, 630, 768
Tru9I TTAA 6 cut(s) 141, 162, 338, 552, 630, 768
TscAI CASTG 2 cut(s) 82, 270
TseFI GTSAC 2 cut(s) 73, 772
Tsp45I GTSAC 2 cut(s) 73, 772
TspDTI ATGAA 6 cut(s) 235, 267, 467, 551, 639, 790
TspGWI ACGGA 2 cut(s) 357, 948
TspRI CASTG 2 cut(s) 82, 270
XagI CCTNNNNNAGG 1 cut(s) 960
XapI RAATTY 5 cut(s) 158, 242, 393, 422, 626
XceI RCATGY 1 cut(s) 501
XmnI GAANNNNTTC 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.