Rmu_sc0016843.1_g000001

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016843.1
Physical Location & Seq
Reverse (-)
2 .. 456
455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016843.1_g000001.1.cds

Sequence Viewer

Length: 455 bp
atggcggacggcggcggcgttcacaagcgagctcttacaagtgtcgccgacctggacggcgtccttgatgagatactggcaaggctaccggtcaaatcactgatgcgatttcgctgcgtctgcaagtcatggcgtgctctcgtctcccagtctcattttgtcgccaagcacttcaactacgcaagcaaaggcttcaccgagaacacctacaggctcttgatatcaatgagtcctctccaatcccgaggctgtgaagcaaccaagcatttgtccctagactgtgaagcattgaaggagttgaaggatgatggagatgctcatcttgcaattagaaagctcgaatctccggtaattttccccaattccagtcgtaggaaaattgtgggttcttgcaatgggctgatttgtgtagaaattgaccagaaagacatggtgttatggaacccttgtactgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

152

Amino Acids

16.85

Weight (kDa)

8.71

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 12, 15
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 1 cut(s) 451
AfiI CCNNNNNNNGG 2 cut(s) 372, 452
AgeI ACCGGT 1 cut(s) 88
AgsI TTSAA 3 cut(s) 175, 292, 301
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 2 cut(s) 32, 337
AluI AGCT 2 cut(s) 32, 337
Alw21I GWGCWC 2 cut(s) 34, 139
Alw26I GTCTC 2 cut(s) 148, 156
Ama87I CYCGRG 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 114
AsiGI ACCGGT 1 cut(s) 88
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 243
BanII GRGCYC 1 cut(s) 34
Bbv12I GWGCWC 2 cut(s) 34, 139
BbvI GCAGC 1 cut(s) 101
BccI CCATC 1 cut(s) 302
BceAI ACGGC 2 cut(s) 25, 73
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 148, 156
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 208
BisI GCNGC 3 cut(s) 13, 16, 115
BlsI GCNGC 3 cut(s) 14, 17, 116
Bme1390I CCNGG 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 243
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 2 cut(s) 93, 304
BmuI ACTGGG 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 244
BsaWI WCCGGW 2 cut(s) 88, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 372, 452
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 3 cut(s) 81, 148, 366
Bse3DI GCAATG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 318
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 372, 452
BseMI GCAATG 1 cut(s) 400
BseNI ACTGG 3 cut(s) 81, 148, 366
BseXI GCAGC 1 cut(s) 101
BshTI ACCGGT 1 cut(s) 88
BsiHKAI GWGCWC 2 cut(s) 34, 139
BsiHKCI CYCGRG 1 cut(s) 243
BsiSI CCGG 2 cut(s) 89, 347
BslFI GGGAC 1 cut(s) 256
BslI CCNNNNNNNGG 2 cut(s) 372, 452
BsmAI GTCTC 2 cut(s) 148, 156
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 243
Bsp1286I GDGCHC 2 cut(s) 34, 139
BspACI CCGC 3 cut(s) 5, 12, 15
BspLI GGNNCC 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 3 cut(s) 81, 148, 366
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 60
BstC8I GCNNGC 3 cut(s) 30, 135, 184
BstF5I GGATG 1 cut(s) 310
BstMAI GTCTC 2 cut(s) 148, 156
BstMWI GCNNNNNNNGC 2 cut(s) 120, 323
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 208
BstV1I GCAGC 1 cut(s) 101
BtsCI GGATG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 98
Cac8I GCNNGC 3 cut(s) 30, 135, 184
Cfr10I RCCGGY 1 cut(s) 88
CseI GACGC 2 cut(s) 49, 106
Csp6I GTAC 1 cut(s) 450
CspAI ACCGGT 1 cut(s) 88
CviAII CATG 2 cut(s) 129, 430
CviJI RGCY 7 cut(s) 32, 85, 192, 214, 249, 337, 400
CviKI_1 RGCY 7 cut(s) 32, 85, 192, 214, 249, 337, 400
CviQI GTAC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 243
EcoICRI GAGCTC 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 51
EcoRV GATATC 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 34
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 2 cut(s) 132, 433
FaiI YATR 3 cut(s) 130, 431, 439
FaqI GGGAC 1 cut(s) 256
FatI CATG 2 cut(s) 128, 429
Fnu4HI GCNGC 3 cut(s) 13, 16, 115
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 3 cut(s) 13, 16, 115
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 13, 16, 115
HapII CCGG 2 cut(s) 89, 347
HgaI GACGC 2 cut(s) 49, 106
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 2 cut(s) 132, 433
HinfI GANTC 2 cut(s) 229, 341
HpaII CCGG 2 cut(s) 89, 347
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 22
Hpy188III TCNNGA 2 cut(s) 217, 243
Hpy8I GTNNAC 1 cut(s) 22
HpyAV CCTTC 2 cut(s) 286, 295
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 3 cut(s) 123, 326, 393
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 323
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 2 cut(s) 132, 433
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 2 cut(s) 93, 304
MaeI CTAG 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 34, 139
MluCI AATT 5 cut(s) 327, 351, 361, 378, 414
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 2 cut(s) 239, 243
MspI CCGG 2 cut(s) 89, 347
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 2 cut(s) 120, 323
NlaIII CATG 2 cut(s) 132, 433
NlaIV GGNNCC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 341
PflFI GACNNNGTC 1 cut(s) 59
PinAI ACCGGT 1 cut(s) 88
PkrI GCNGC 3 cut(s) 14, 17, 116
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp124BI GAGCTC 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 59
RsaI GTAC 1 cut(s) 451
RsaNI GTAC 1 cut(s) 450
SacI GAGCTC 1 cut(s) 34
SatI GCNGC 3 cut(s) 13, 16, 115
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 2 cut(s) 34, 139
SetI ASST 4 cut(s) 34, 54, 209, 339
SfaNI GCATC 2 cut(s) 93, 304
SfcI CTRYAG 1 cut(s) 208
Sse9I AATT 5 cut(s) 327, 351, 361, 378, 414
SsiI CCGC 3 cut(s) 5, 12, 15
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 1 cut(s) 339
TasI AATT 5 cut(s) 327, 351, 361, 378, 414
TatI WGTACW 1 cut(s) 449
TauI GCSGC 2 cut(s) 15, 18
TfiI GAWTC 1 cut(s) 341
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 114
TspRI CASTG 1 cut(s) 105
Tth111I GACNNNGTC 1 cut(s) 59
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.