FvH4_6g33751

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Forward (+)
26742714 .. 26743473
760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33751.t1

Sequence Viewer

Length: 651 bp
ATGGGGGACGGCAATGATGAGGTCCTTAAGCGAGATCATACCGACTTAGGCGACTATGATGAAGATGTGACTGCCGAGATCCTAGCAAGGCTGCCGCTCAAATCCTTGATGCGATTCCGGCTGGATCCTCCTTTTGCGTTGGACTGTGAAGCCTTGGAAAGTGTTGAGGGTGATGATGTTCATGGTGGTTGTGGTGGTCAGTTTGTCACTCGGTTGGACTTTAAAACTAACTGTCATTTCCGTTATAAATATCTTGTTGGTGCTTGCAATGGCTTGGTATGTGTGGGACAATCTGGTACTGTTGACTCGAACGACATTATGTTATGGAACCCTTGCACTAGAGACTCCAAGGTTTTACCAAAACCTCCTCGAGTTCACTATGTGTCTTTTTATGGATTCGGGTATGATTCTACTAATGACGACTACAAGGTGATACGGGGTTTCTCTTATTGGGATGGTGCTCGTTCGAAATTCACGATTCACATCTTCTCACTGAAACGAGGTTCATGGAGGACTGTCAAAGACATTGATTATGTTCAGATTCTTACGCAGCAAGGGTTATACTTCAATGGAGCTCTGCATTGGTTATATTGGGTACGCCAAGGGTGCTCAAGAATTTTGTCTTTTGATTTAGGAGCAGAGCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

217

Amino Acids

24.65

Weight (kDa)

5.65

Isoelectric Point (pI)

32.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 72 - 216 6.5e-21 F-box associated beta propeller domain
FBA_1 PF07734 86 - 216 3.2e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 1 cut(s) 95
AclWI GGATC 3 cut(s) 73, 119, 132
AcsI RAATTY 2 cut(s) 470, 615
AdeI CACNNNGTG 1 cut(s) 382
AfaI GTAC 2 cut(s) 298, 597
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 568
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw21I GWGCWC 3 cut(s) 463, 577, 611
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 3 cut(s) 73, 119, 132
Ama87I CYCGRG 1 cut(s) 369
ApeKI GCWGC 2 cut(s) 91, 550
ApoI RAATTY 2 cut(s) 470, 615
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 182, 442
AsuII TTCGAA 1 cut(s) 467
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 22
BamHI GGATCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 577
Bbv12I GWGCWC 3 cut(s) 463, 577, 611
BbvI GCAGC 2 cut(s) 78, 562
BccI CCATC 1 cut(s) 449
BceAI ACGGC 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 336
BfaI CTAG 2 cut(s) 83, 339
BfrI CTTAAG 1 cut(s) 26
BisI GCNGC 3 cut(s) 92, 95, 551
BlsI GCNGC 3 cut(s) 93, 96, 552
Bme18I GGWCC 1 cut(s) 22
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 126, 329
BmsI GCATC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 482
BsaJI CCNNGG 3 cut(s) 153, 348, 601
Bse3DI GCAATG 2 cut(s) 19, 274
Bse8I GATNNNNATC 1 cut(s) 482
BseDI CCNNGG 3 cut(s) 153, 348, 601
BseGI GGATG 1 cut(s) 460
BseJI GATNNNNATC 1 cut(s) 482
BseMI GCAATG 2 cut(s) 19, 274
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 2 cut(s) 78, 562
BsiHKAI GWGCWC 3 cut(s) 463, 577, 611
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 2 cut(s) 20, 300
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 2 cut(s) 20, 300
BsoBI CYCGRG 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 467
Bsp1286I GDGCHC 3 cut(s) 463, 577, 611
Bsp143I GATC 3 cut(s) 34, 78, 124
BspACI CCGC 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 126, 329
BspPI GGATC 3 cut(s) 73, 119, 132
BspT104I TTCGAA 1 cut(s) 467
BspTI CTTAAG 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 2 cut(s) 19, 274
BssECI CCNNGG 3 cut(s) 153, 348, 601
BssMI GATC 3 cut(s) 34, 78, 124
BssT1I CCWWGG 3 cut(s) 153, 348, 601
Bst4CI ACNGT 4 cut(s) 146, 233, 301, 517
BstAFI CTTAAG 1 cut(s) 26
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 46
BstF5I GGATG 1 cut(s) 460
BstKTI GATC 3 cut(s) 37, 81, 127
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 3 cut(s) 34, 78, 124
BstMWI GCNNNNNNNGC 2 cut(s) 118, 606
BstV1I GCAGC 2 cut(s) 78, 562
BstX2I RGATCY 2 cut(s) 78, 124
BstYI RGATCY 2 cut(s) 78, 124
BtsCI GGATG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 297, 596
CviAII CATG 2 cut(s) 182, 507
CviJI RGCY 5 cut(s) 91, 121, 152, 273, 575
CviKI_1 RGCY 5 cut(s) 91, 121, 152, 273, 575
CviQI GTAC 2 cut(s) 297, 596
DdeI CTNAG 1 cut(s) 46
DpnI GATC 3 cut(s) 36, 80, 126
DpnII GATC 3 cut(s) 34, 78, 124
DraI TTTAAA 1 cut(s) 223
DraIII CACNNNGTG 1 cut(s) 382
Ecl136II GAGCTC 1 cut(s) 575
Eco130I CCWWGG 3 cut(s) 153, 348, 601
Eco24I GRGCYC 1 cut(s) 577
Eco47I GGWCC 1 cut(s) 22
Eco53kI GAGCTC 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 369
EcoICRI GAGCTC 1 cut(s) 575
EcoO109I RGGNCCY 1 cut(s) 22
EcoT14I CCWWGG 3 cut(s) 153, 348, 601
EcoT38I GRGCYC 1 cut(s) 577
ErhI CCWWGG 3 cut(s) 153, 348, 601
FaeI CATG 2 cut(s) 185, 510
FaqI GGGAC 2 cut(s) 20, 300
FatI CATG 2 cut(s) 181, 506
Fnu4HI GCNGC 3 cut(s) 92, 95, 551
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 577
Fsp4HI GCNGC 3 cut(s) 92, 95, 551
FspBI CTAG 2 cut(s) 83, 339
GluI GCNGC 3 cut(s) 92, 95, 551
HapII CCGG 1 cut(s) 118
Hin1II CATG 2 cut(s) 185, 510
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 7 cut(s) 114, 305, 344, 396, 407, 478, 541
HpaII CCGG 1 cut(s) 118
HphI GGTGA 2 cut(s) 182, 442
Hpy166II GTNNAC 2 cut(s) 304, 376
Hpy188I TCNGA 1 cut(s) 540
Hpy188III TCNNGA 2 cut(s) 475, 612
Hpy8I GTNNAC 2 cut(s) 304, 376
HpyCH4III ACNGT 4 cut(s) 146, 233, 301, 517
HpyCH4V TGCA 3 cut(s) 267, 336, 580
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 606
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 2 cut(s) 185, 510
Kzo9I GATC 3 cut(s) 34, 78, 124
LmnI GCTCC 2 cut(s) 572, 635
LpnPI CCDG 3 cut(s) 107, 131, 279
Lsp1109I GCAGC 2 cut(s) 78, 562
LweI GCATC 1 cut(s) 99
MaeI CTAG 2 cut(s) 83, 339
MaeIII GTNAC 2 cut(s) 67, 205
MalI GATC 3 cut(s) 36, 80, 126
MbiI CCGCTC 1 cut(s) 97
MboI GATC 3 cut(s) 34, 78, 124
MboII GAAGA 2 cut(s) 74, 478
MflI RGATCY 2 cut(s) 78, 124
MhlI GDGCHC 3 cut(s) 463, 577, 611
MluCI AATT 3 cut(s) 470, 615, 644
MlyI GAGTC 2 cut(s) 299, 338
MmeI TCCRAC 2 cut(s) 120, 195
MnlI CCTC 7 cut(s) 13, 138, 160, 375, 378, 494, 504
MseI TTAA 2 cut(s) 27, 222
MspCI CTTAAG 1 cut(s) 26
MspI CCGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 118, 606
NdeII GATC 3 cut(s) 34, 78, 124
NlaIII CATG 2 cut(s) 185, 510
NlaIV GGNNCC 2 cut(s) 126, 329
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 67, 205
NspV TTCGAA 1 cut(s) 467
PaeR7I CTCGAG 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 473
PfeI GAWTC 5 cut(s) 114, 396, 407, 478, 541
PkrI GCNGC 3 cut(s) 93, 96, 552
PleI GAGTC 2 cut(s) 299, 338
PpsI GAGTC 2 cut(s) 299, 338
PpuMI RGGWCCY 1 cut(s) 22
PsiI TTATAA 1 cut(s) 246
Psp124BI GAGCTC 1 cut(s) 577
Psp5II RGGWCCY 1 cut(s) 22
PspN4I GGNNCC 2 cut(s) 126, 329
PspPI GGNCC 1 cut(s) 22
PspPPI RGGWCCY 1 cut(s) 22
PspXI VCTCGAGB 1 cut(s) 369
PsuI RGATCY 2 cut(s) 78, 124
RsaI GTAC 2 cut(s) 298, 597
RsaNI GTAC 2 cut(s) 297, 596
SacI GAGCTC 1 cut(s) 577
SaqAI TTAA 2 cut(s) 27, 222
SatI GCNGC 3 cut(s) 92, 95, 551
Sau3AI GATC 3 cut(s) 34, 78, 124
Sau96I GGNCC 1 cut(s) 22
SchI GAGTC 2 cut(s) 299, 338
SduI GDGCHC 3 cut(s) 463, 577, 611
SetI ASST 6 cut(s) 24, 354, 367, 432, 505, 577
SfaNI GCATC 1 cut(s) 99
Sfr274I CTCGAG 1 cut(s) 369
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 369
SmlI CTYRAG 3 cut(s) 26, 369, 610
SmoI CTYRAG 3 cut(s) 26, 369, 610
Sse9I AATT 3 cut(s) 470, 615, 644
SsiI CCGC 1 cut(s) 95
SspMI CTAG 2 cut(s) 83, 339
SstI GAGCTC 1 cut(s) 577
StyI CCWWGG 3 cut(s) 153, 348, 601
TaaI ACNGT 4 cut(s) 146, 233, 301, 517
TaqI TCGA 3 cut(s) 308, 370, 467
TasI AATT 3 cut(s) 470, 615, 644
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 5 cut(s) 114, 396, 407, 478, 541
Tru1I TTAA 2 cut(s) 27, 222
Tru9I TTAA 2 cut(s) 27, 222
TscAI CASTG 1 cut(s) 498
TseFI GTSAC 2 cut(s) 67, 205
TseI GCWGC 2 cut(s) 91, 550
Tsp45I GTSAC 2 cut(s) 67, 205
TspDTI ATGAA 3 cut(s) 75, 170, 495
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 498
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 22
XapI RAATTY 2 cut(s) 470, 615
XhoI CTCGAG 1 cut(s) 369
XspI CTAG 2 cut(s) 83, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.