FvH4_6g47950

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Forward (+)
36216479 .. 36218010
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47950.t2

Sequence Viewer

Length: 678 bp
ATGGTTCCGTTATTGGATCATGATCGTGTTTTTCAGGGTGTACTAGTGTATAAAGATCATCTGTGCGTGTATGAGATTAAGGATGGTGCCCCTGGTTTTGTATCGGTATGGTTGATGGAGGAATATGGGGTCAAGGAGTCGTGGACTCGAGTTATACACTTTCGGTTGCAGAAGTCAGCAAGAGAGGAGTTTAGACCCTTGTGCATTTTGCAGAATGGTGAAATTTTGATGCATCGGATTCTGTATGATGTGTATGATGATCCTGATCCTGACCCTGATCCTTATGAGTTTGATTATCATGATCCTGATGAGTTTGAATATCCTGAATATCCCTATCCTGATCCTGATGAGTTTGATTATCCTGATCCTGATCCTGATCCTGATCCATTTGATGATCCTGAAGTGTATGATGATCCGTATGAGTTTGATTATCCTGATCCTGATCCATTTGATGATCCTGAAGTGTATGATGATCCATATAAGTCTGATGATCCGTATGAAGAATTTGATTATTATGACTATAATCAAGAGACGTGGGAGAGAGAAATAAGCACATTGGTATTAGTTGATCAAACCAGTTGGGGGTATGTTTTTGAGGTTGACTTGGGTCTCGGATCTGCCATTTACAAGGAGACTTTAGTTTCACCGCTAACAGCAGTCAGTACTGCAGACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

226

Amino Acids

26.68

Weight (kDa)

4.05

Isoelectric Point (pI)

33.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AciI CCGC 1 cut(s) 647
AcsI RAATTY 2 cut(s) 222, 503
AcuI CTGAAG 2 cut(s) 420, 480
AfaI GTAC 2 cut(s) 42, 664
AfiI CCNNNNNNNGG 1 cut(s) 582
AgsI TTSAA 1 cut(s) 317
AhlI ACTAGT 1 cut(s) 43
AjiI CACGTC 1 cut(s) 534
AjnI CCWGG 1 cut(s) 91
Alw26I GTCTC 3 cut(s) 524, 614, 626
Ama87I CYCGRG 1 cut(s) 147
ApoI RAATTY 2 cut(s) 222, 503
AsuHPI GGTGA 2 cut(s) 230, 636
AvaI CYCGRG 1 cut(s) 147
BaeGI GKGCMC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 86
BccI CCATC 2 cut(s) 77, 109
BciT130I CCWGG 1 cut(s) 93
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 3 cut(s) 524, 614, 626
BcuI ACTAGT 1 cut(s) 43
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 666
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 534
BmiI GGNNCC 2 cut(s) 6, 88
BmrFI CCNGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 219, 241
BoxI GACNNNNGTC 1 cut(s) 606
BsaBI GATNNNNATC 6 cut(s) 21, 264, 369, 375, 381, 441
BsaI GGTCTC 1 cut(s) 614
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 1 cut(s) 582
Bse1I ACTGG 1 cut(s) 576
Bse8I GATNNNNATC 6 cut(s) 21, 264, 369, 375, 381, 441
BseBI CCWGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 88
BseJI GATNNNNATC 6 cut(s) 21, 264, 369, 375, 381, 441
BseLI CCNNNNNNNGG 1 cut(s) 582
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 200
BseSI GKGCMC 1 cut(s) 91
BshNI GGYRCC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 582
BsmAI GTCTC 3 cut(s) 524, 614, 626
BsmBI CGTCTC 1 cut(s) 524
Bso31I GGTCTC 1 cut(s) 614
BsoBI CYCGRG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 91
BspACI CCGC 1 cut(s) 647
BspHI TCATGA 2 cut(s) 19, 298
BspLI GGNNCC 2 cut(s) 6, 88
BspMAI CTGCAG 1 cut(s) 670
BspT107I GGYRCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 614
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 88
BstMAI GTCTC 3 cut(s) 524, 614, 626
BstNI CCWGG 1 cut(s) 93
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 91
BstX2I RGATCY 1 cut(s) 614
BstYI RGATCY 1 cut(s) 614
BtrI CACGTC 1 cut(s) 534
BtsCI GGATG 1 cut(s) 88
CciI TCATGA 2 cut(s) 19, 298
Csp6I GTAC 2 cut(s) 41, 663
CspCI CAANNNNNGTGG 2 cut(s) 515, 550
CviAII CATG 2 cut(s) 20, 299
CviQI GTAC 2 cut(s) 41, 663
Eco31I GGTCTC 1 cut(s) 614
Eco57I CTGAAG 2 cut(s) 420, 480
Eco88I CYCGRG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 2 cut(s) 23, 302
FatI CATG 2 cut(s) 19, 298
FauNDI CATATG 1 cut(s) 674
FbaI TGATCA 1 cut(s) 568
FokI GGATG 1 cut(s) 95
FspBI CTAG 1 cut(s) 44
Hin1II CATG 2 cut(s) 23, 302
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 3 cut(s) 137, 145, 238
HphI GGTGA 2 cut(s) 230, 636
Hpy166II GTNNAC 3 cut(s) 41, 144, 601
Hpy188I TCNGA 3 cut(s) 237, 487, 614
Hpy8I GTNNAC 3 cut(s) 41, 144, 601
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 5 cut(s) 169, 204, 211, 232, 668
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 2 cut(s) 23, 302
Ksp22I TGATCA 1 cut(s) 568
LweI GCATC 2 cut(s) 219, 241
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 533
MboII GAAGA 1 cut(s) 512
MflI RGATCY 1 cut(s) 614
MhlI GDGCHC 1 cut(s) 91
MluCI AATT 2 cut(s) 222, 503
MlyI GAGTC 2 cut(s) 139, 146
MnlI CCTC 3 cut(s) 112, 178, 589
Mph1103I ATGCAT 1 cut(s) 234
MseI TTAA 1 cut(s) 78
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
NdeI CATATG 1 cut(s) 674
NlaIII CATG 2 cut(s) 23, 302
NlaIV GGNNCC 2 cut(s) 6, 88
NsiI ATGCAT 1 cut(s) 234
PaeR7I CTCGAG 1 cut(s) 147
PagI TCATGA 2 cut(s) 19, 298
PfeI GAWTC 1 cut(s) 238
PleI GAGTC 2 cut(s) 139, 145
PpsI GAGTC 2 cut(s) 139, 145
PshAI GACNNNNGTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 6, 88
PspXI VCTCGAGB 1 cut(s) 147
PstI CTGCAG 1 cut(s) 670
PsuI RGATCY 1 cut(s) 614
RsaI GTAC 2 cut(s) 42, 664
RsaNI GTAC 2 cut(s) 41, 663
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 1 cut(s) 78
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 2 cut(s) 139, 146
ScrFI CCNGG 1 cut(s) 93
SduI GDGCHC 1 cut(s) 91
SetI ASST 2 cut(s) 536, 600
SfaNI GCATC 2 cut(s) 219, 241
SfcI CTRYAG 1 cut(s) 666
Sfr274I CTCGAG 1 cut(s) 147
SlaI CTCGAG 1 cut(s) 147
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 43
Sse9I AATT 2 cut(s) 222, 503
SsiI CCGC 1 cut(s) 647
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 91
TaiI ACGT 1 cut(s) 536
TaqI TCGA 1 cut(s) 148
TasI AATT 2 cut(s) 222, 503
TatI WGTACW 2 cut(s) 40, 662
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TspDTI ATGAA 1 cut(s) 513
TspGWI ACGGA 2 cut(s) 405, 483
XapI RAATTY 2 cut(s) 222, 503
XhoI CTCGAG 1 cut(s) 147
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 664
Zsp2I ATGCAT 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.