RchiOBHm_Chr1g0347211

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000113
Physical Location & Seq
Reverse (-)
39833931 .. 39834446
516 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57336

Sequence Viewer

Length: 516 bp
ATGCGATTTCGCTGCGTCTGCAAGCCATGGCGTGCTCTCATCTCCCAGTCTCACTTTCTCACCAAGCACTTCAACTATGCAAGCAAAGGCTTCGCCGAGAACACCTCTAGCCTCTTGATATCAATGAGTCCCTTCAAATCCCTAGACTCTGAAGCATCCAAGGATTTGTCCCTAGACTGTGAAGCATTGAAGGACTTGAACAATGATGGAGATGCTCATCTTGCAATTAGAAAGCTCGAGTTTCCAGTAATGTTCCCTAATTCCAGTCGTAGAAATATTGTGGGTTCTTGCAATGGGCTGATTTGTGTAGAAATTGACGAGAAAGACATGGTGTTATGGAACCCTTGTACTGGACAATCTAATTTGTTACCAAAACGTACTTCGAAGCTTTGCGGAGTTGGTTATGATCTCACTATGAAGTTTTCCGGATTTGGTTATGATTCCACTAATGATGATTATAAGGTAGTGAGAGGATACAGTTTCAGAGTTGCGGGTTCTAAGGAAACCGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

171

Amino Acids

19.14

Weight (kDa)

8.45

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 80 - 157 1.2e-10 F-box associated beta propeller domain
FBA_1 PF07734 90 - 159 7e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 425
AciI CCGC 2 cut(s) 393, 491
AcuI CTGAAG 1 cut(s) 171
AfaI GTAC 2 cut(s) 349, 379
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 4 cut(s) 73, 136, 190, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 2 cut(s) 235, 388
AluI AGCT 2 cut(s) 235, 388
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 54
Ama87I CYCGRG 1 cut(s) 236
Aor13HI TCCGGA 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 52
AsuII TTCGAA 1 cut(s) 383
AvaI CYCGRG 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 1 cut(s) 200
BcgI CGANNNNNNTGC 3 cut(s) 28, 73, 107
BciVI GTATCC 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 3 cut(s) 108, 143, 173
BfuI GTATCC 1 cut(s) 467
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 341
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 2 cut(s) 164, 202
BmuI ACTGGG 1 cut(s) 40
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu14I TTCGAA 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 26, 159, 507
BsaWI WCCGGW 1 cut(s) 425
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 4 cut(s) 46, 245, 264, 355
Bse3DI GCAATG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 425
BseDI CCNNGG 3 cut(s) 26, 159, 507
BseGI GGATG 1 cut(s) 155
BseJI GATNNNNATC 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 298
BseNI ACTGG 4 cut(s) 46, 245, 264, 355
BsiHKAI GWGCWC 1 cut(s) 37
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 1 cut(s) 426
BslFI GGGAC 2 cut(s) 114, 154
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 2 cut(s) 114, 154
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 425
Bsp143I GATC 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 26
BspACI CCGC 2 cut(s) 393, 491
BspEI TCCGGA 1 cut(s) 425
BspLI GGNNCC 1 cut(s) 341
BspT104I TTCGAA 1 cut(s) 383
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 4 cut(s) 46, 245, 264, 355
BssECI CCNNGG 3 cut(s) 26, 159, 507
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 2 cut(s) 26, 159
Bst4CI ACNGT 3 cut(s) 179, 479, 508
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 3 cut(s) 23, 33, 82
BstDEI CTNAG 1 cut(s) 498
BstDSI CCRYGG 2 cut(s) 26, 507
BstF5I GGATG 1 cut(s) 155
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 18, 221
BsuI GTATCC 1 cut(s) 467
BtgI CCRYGG 2 cut(s) 26, 507
BtsCI GGATG 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 23, 33, 82
CseI GACGC 1 cut(s) 4
Csp6I GTAC 2 cut(s) 348, 378
CviAII CATG 2 cut(s) 27, 328
CviJI RGCY 6 cut(s) 25, 90, 111, 235, 298, 388
CviKI_1 RGCY 6 cut(s) 25, 90, 111, 235, 298, 388
CviQI GTAC 2 cut(s) 348, 378
DdeI CTNAG 1 cut(s) 498
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 26, 159
Eco32I GATATC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 236
EcoRV GATATC 1 cut(s) 120
EcoT14I CCWWGG 2 cut(s) 26, 159
ErhI CCWWGG 2 cut(s) 26, 159
FaeI CATG 2 cut(s) 30, 331
FaiI YATR 8 cut(s) 28, 78, 329, 337, 405, 416, 438, 459
FaqI GGGAC 2 cut(s) 114, 154
FatI CATG 2 cut(s) 26, 327
FauI CCCGC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 13
FspBI CTAG 3 cut(s) 108, 143, 173
GluI GCNGC 1 cut(s) 13
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 4
Hin1II CATG 2 cut(s) 30, 331
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 127, 146, 440
HpaII CCGG 1 cut(s) 426
HphI GGTGA 1 cut(s) 52
Hpy188I TCNGA 2 cut(s) 151, 485
Hpy188III TCNNGA 2 cut(s) 115, 426
HpyAV CCTTC 2 cut(s) 142, 184
HpyCH4III ACNGT 3 cut(s) 179, 479, 508
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 21, 80, 224, 291
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 221
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 2 cut(s) 30, 331
Kpn2I TCCGGA 1 cut(s) 425
Kzo9I GATC 1 cut(s) 406
LpnPI CCDG 5 cut(s) 59, 258, 277, 336, 439
LweI GCATC 2 cut(s) 164, 202
MaeI CTAG 3 cut(s) 108, 143, 173
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 366
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 4 cut(s) 225, 259, 312, 361
MlyI GAGTC 2 cut(s) 136, 140
MnlI CCTC 3 cut(s) 115, 122, 464
MroI TCCGGA 1 cut(s) 425
MspI CCGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 18, 221
NcoI CCATGG 1 cut(s) 26
NdeII GATC 1 cut(s) 406
NlaIII CATG 2 cut(s) 30, 331
NlaIV GGNNCC 1 cut(s) 341
NmeAIII GCCGAG 1 cut(s) 121
NspV TTCGAA 1 cut(s) 383
PaeR7I CTCGAG 1 cut(s) 236
PfeI GAWTC 1 cut(s) 440
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 2 cut(s) 135, 140
PpsI GAGTC 2 cut(s) 135, 140
PsiI TTATAA 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 341
PspXI VCTCGAGB 1 cut(s) 236
RsaI GTAC 2 cut(s) 349, 379
RsaNI GTAC 2 cut(s) 348, 378
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 2 cut(s) 136, 140
SduI GDGCHC 1 cut(s) 37
SetI ASST 5 cut(s) 107, 237, 379, 390, 465
SfaNI GCATC 2 cut(s) 164, 202
Sfr274I CTCGAG 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 383
SlaI CTCGAG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 4 cut(s) 225, 259, 312, 361
SsiI CCGC 2 cut(s) 393, 491
SspI AATATT 1 cut(s) 277
SspMI CTAG 3 cut(s) 108, 143, 173
StyI CCWWGG 2 cut(s) 26, 159
TaaI ACNGT 3 cut(s) 179, 479, 508
TaiI ACGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 237, 383
TasI AATT 4 cut(s) 225, 259, 312, 361
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 1 cut(s) 440
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 1 cut(s) 431
XhoI CTCGAG 1 cut(s) 236
XspI CTAG 3 cut(s) 108, 143, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.