Rmu_co8346313.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8346313.1
OG0000113
Physical Location & Seq
Forward (+)
238 .. 987
750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8346313.1_g000001.1.cds

Sequence Viewer

Length: 750 bp
atgttatggaatccttgtaccggagaataccaggtcctaccacaacctcccgttcatgcctcccgcggatgttttttcgggttcggttatgattcaaccagtgatgactacaaagtaatagtgggtagctctagatatgaatttgttgttgtctttatgctaaaaaagggttcatggaggaagcttgaaaggctcaacaggtatttcgaggtgaattggcatgggtgtttagttaacgaagctctgcattgggtattgacgcaagaggaagacggttggttaatcgctccaagaatagtgtcatttgatttaggggaggagaaatttcatgagattccattctcctatcctcccgatgcaaatgacaggcagggtttatttccagatgttggaattctttgtaattgcttaactctagagtttcagaccatgtatggcggagttgacagcaatataagcatatgggttatgaaggactatggagtcaaggaatcttggactgaagtcctaaacatccctccagaggatttggatgaaggtgaactgtatacatgcattgcatgcatttctgagaatggcgagattttgatgcagctgggagttacaggcgcttgccccatggcattatataatccgagggagaagacatataggattgtcatgcacgatcatgataccgtggattgtactgctccttatatagaaactttagtttcaccattaactggcagtactagcgcatgcgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

249

Amino Acids

28.26

Weight (kDa)

4.57

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 482
AccB7I CCANNNNNTGG 2 cut(s) 389, 725
AccI GTMKAC 1 cut(s) 548
AccII CGCG 1 cut(s) 66
AciI CCGC 3 cut(s) 64, 66, 438
AcsI RAATTY 3 cut(s) 140, 323, 393
AcuI CTGAAG 1 cut(s) 522
AfaI GTAC 3 cut(s) 19, 688, 733
AfiI CCNNNNNNNGG 4 cut(s) 20, 389, 523, 725
AgsI TTSAA 2 cut(s) 96, 188
AjnI CCWGG 1 cut(s) 30
AluBI AGCT 4 cut(s) 129, 184, 242, 595
AluI AGCT 4 cut(s) 129, 184, 242, 595
ApeKI GCWGC 1 cut(s) 592
ApoI RAATTY 3 cut(s) 140, 323, 393
AspLEI GCGC 2 cut(s) 611, 740
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 3 cut(s) 223, 551, 708
AvaII GGWCC 1 cut(s) 34
BbsI GAAGAC 2 cut(s) 276, 650
BbvI GCAGC 1 cut(s) 604
BciT130I CCWGG 1 cut(s) 32
BfaI CTAG 3 cut(s) 132, 416, 735
BfoI RGCGCY 1 cut(s) 612
BisI GCNGC 1 cut(s) 593
BlsI GCNGC 1 cut(s) 594
BmcAI AGTACT 1 cut(s) 733
Bme1390I CCNGG 1 cut(s) 32
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 32
BmsI GCATC 2 cut(s) 346, 579
BoxI GACNNNNGTC 1 cut(s) 503
BpiI GAAGAC 2 cut(s) 276, 650
BpmI CTGGAG 1 cut(s) 504
BsaJI CCNNGG 4 cut(s) 64, 618, 635, 678
BsaWI WCCGGW 1 cut(s) 20
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 389, 523, 725
Bse1I ACTGG 2 cut(s) 99, 730
Bse3DI GCAATG 1 cut(s) 555
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 4 cut(s) 64, 618, 635, 678
BseGI GGATG 3 cut(s) 74, 513, 538
BseLI CCNNNNNNNGG 4 cut(s) 20, 389, 523, 725
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 2 cut(s) 99, 730
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 1 cut(s) 604
BseYI CCCAGC 1 cut(s) 595
Bsh1236I CGCG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 4 cut(s) 20, 389, 523, 725
Bsp143I GATC 1 cut(s) 667
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 3 cut(s) 64, 66, 438
BspCNI CTCAG 1 cut(s) 562
BspFNI CGCG 1 cut(s) 66
BspHI TCATGA 2 cut(s) 328, 670
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 2 cut(s) 99, 730
BssECI CCNNGG 4 cut(s) 64, 618, 635, 678
BssMI GATC 1 cut(s) 667
BssNAI GTATAC 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 618
Bst1107I GTATAC 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 275, 546, 679
BstAPI GCANNNNNTGC 1 cut(s) 561
BstC8I GCNNGC 3 cut(s) 562, 613, 742
BstDEI CTNAG 1 cut(s) 570
BstDSI CCRYGG 3 cut(s) 64, 618, 678
BstF5I GGATG 3 cut(s) 74, 513, 538
BstFNI CGCG 1 cut(s) 66
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 2 cut(s) 611, 740
BstKTI GATC 1 cut(s) 670
BstMBI GATC 1 cut(s) 667
BstMWI GCNNNNNNNGC 4 cut(s) 190, 456, 561, 735
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 3 cut(s) 555, 564, 744
BstPAI GACNNNNGTC 1 cut(s) 503
BstSCI CCNGG 1 cut(s) 30
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 2 cut(s) 276, 650
BstZ17I GTATAC 1 cut(s) 549
BtgI CCRYGG 3 cut(s) 64, 618, 678
BtsCI GGATG 3 cut(s) 74, 513, 538
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 3 cut(s) 562, 613, 742
CciI TCATGA 2 cut(s) 328, 670
CfoI GCGC 2 cut(s) 611, 740
Cfr13I GGNCC 1 cut(s) 34
Cfr42I CCGCGG 1 cut(s) 67
CseI GACGC 1 cut(s) 268
CsiI ACCWGGT 1 cut(s) 30
Csp6I GTAC 3 cut(s) 18, 687, 732
CviJI RGCY 5 cut(s) 129, 184, 193, 242, 595
CviKI_1 RGCY 5 cut(s) 129, 184, 193, 242, 595
CviQI GTAC 3 cut(s) 18, 687, 732
DdeI CTNAG 1 cut(s) 570
DpnI GATC 1 cut(s) 669
DpnII GATC 1 cut(s) 667
DrdI GACNNNNNNGTC 1 cut(s) 482
DseDI GACNNNNNNGTC 1 cut(s) 482
EciI GGCGGA 1 cut(s) 453
Eco130I CCWWGG 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 522
EcoO109I RGGNCCY 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 1 cut(s) 618
EcoT22I ATGCAT 2 cut(s) 557, 566
ErhI CCWWGG 1 cut(s) 618
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 461
FblI GTMKAC 1 cut(s) 548
Fnu4HI GCNGC 1 cut(s) 593
FokI GGATG 3 cut(s) 81, 500, 545
Fsp4HI GCNGC 1 cut(s) 593
FspBI CTAG 3 cut(s) 132, 416, 735
GlaI GCGC 2 cut(s) 610, 739
GluI GCNGC 1 cut(s) 593
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 612
HapII CCGG 1 cut(s) 21
HgaI GACGC 1 cut(s) 268
HhaI GCGC 2 cut(s) 611, 740
Hin6I GCGC 2 cut(s) 609, 738
HinP1I GCGC 2 cut(s) 609, 738
HincII GTYRAC 2 cut(s) 235, 445
HindII GTYRAC 2 cut(s) 235, 445
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 5 cut(s) 10, 92, 334, 483, 491
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 1 cut(s) 21
HphI GGTGA 3 cut(s) 223, 551, 708
Hpy166II GTNNAC 4 cut(s) 235, 445, 542, 549
Hpy188I TCNGA 3 cut(s) 426, 571, 636
Hpy188III TCNNGA 7 cut(s) 132, 329, 353, 383, 416, 521, 671
Hpy8I GTNNAC 4 cut(s) 235, 445, 542, 549
HpyAV CCTTC 2 cut(s) 466, 530
HpyCH4III ACNGT 3 cut(s) 275, 546, 679
HpyCH4V TGCA 7 cut(s) 247, 359, 555, 560, 564, 592, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 456, 561, 735
HpyF3I CTNAG 1 cut(s) 570
HspAI GCGC 2 cut(s) 609, 738
KspAI GTTAAC 1 cut(s) 235
KspI CCGCGG 1 cut(s) 67
Kzo9I GATC 1 cut(s) 667
LmnI GCTCC 2 cut(s) 292, 697
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 2 cut(s) 346, 579
MabI ACCWGGT 1 cut(s) 30
MaeI CTAG 3 cut(s) 132, 416, 735
MaeIII GTNAC 1 cut(s) 601
MalI GATC 1 cut(s) 669
MboI GATC 1 cut(s) 667
MboII GAAGA 2 cut(s) 281, 655
MluCI AATT 5 cut(s) 140, 214, 323, 393, 403
MlyI GAGTC 1 cut(s) 492
MmeI TCCRAC 1 cut(s) 370
Mph1103I ATGCAT 2 cut(s) 557, 566
MseI TTAA 4 cut(s) 234, 281, 410, 722
MslI CAYNNNNRTG 2 cut(s) 669, 745
MspA1I CMGCKG 2 cut(s) 66, 595
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 32
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 190, 456, 561, 735
NcoI CCATGG 1 cut(s) 618
NdeI CATATG 1 cut(s) 461
NdeII GATC 1 cut(s) 667
NsiI ATGCAT 2 cut(s) 557, 566
NspI RCATGY 3 cut(s) 555, 564, 744
PaeI GCATGC 2 cut(s) 564, 744
PagI TCATGA 2 cut(s) 328, 670
PfeI GAWTC 4 cut(s) 10, 92, 334, 491
PflMI CCANNNNNTGG 2 cut(s) 389, 725
PkrI GCNGC 1 cut(s) 594
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
PpuMI RGGWCCY 1 cut(s) 34
PshAI GACNNNNGTC 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 34
Psp6I CCWGG 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 30
PspPI GGNCC 1 cut(s) 34
PspPPI RGGWCCY 1 cut(s) 34
PvuII CAGCTG 1 cut(s) 595
RsaI GTAC 3 cut(s) 19, 688, 733
RsaNI GTAC 3 cut(s) 18, 687, 732
RseI CAYNNNNRTG 2 cut(s) 669, 745
SacII CCGCGG 1 cut(s) 67
SaqAI TTAA 4 cut(s) 234, 281, 410, 722
SatI GCNGC 1 cut(s) 593
Sau3AI GATC 1 cut(s) 667
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 733
SchI GAGTC 1 cut(s) 492
ScrFI CCNGG 1 cut(s) 32
SetI ASST 9 cut(s) 36, 49, 131, 186, 203, 213, 244, 541, 597
SexAI ACCWGGT 1 cut(s) 30
SfaNI GCATC 2 cut(s) 346, 579
Sfr303I CCGCGG 1 cut(s) 67
SgrBI CCGCGG 1 cut(s) 67
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 2 cut(s) 669, 745
SphI GCATGC 2 cut(s) 564, 744
Sse9I AATT 5 cut(s) 140, 214, 323, 393, 403
SsiI CCGC 3 cut(s) 64, 66, 438
SspMI CTAG 3 cut(s) 132, 416, 735
StyD4I CCNGG 1 cut(s) 30
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 3 cut(s) 275, 546, 679
TaqI TCGA 1 cut(s) 207
TasI AATT 5 cut(s) 140, 214, 323, 393, 403
TatI WGTACW 2 cut(s) 686, 731
TfiI GAWTC 4 cut(s) 10, 92, 334, 491
Tru1I TTAA 4 cut(s) 234, 281, 410, 722
Tru9I TTAA 4 cut(s) 234, 281, 410, 722
TscAI CASTG 1 cut(s) 106
TseI GCWGC 1 cut(s) 592
TspDTI ATGAA 6 cut(s) 44, 153, 162, 317, 485, 549
TspRI CASTG 1 cut(s) 106
Van91I CCANNNNNTGG 2 cut(s) 389, 725
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 3 cut(s) 140, 323, 393
XbaI TCTAGA 2 cut(s) 131, 415
XceI RCATGY 3 cut(s) 555, 564, 744
XmiI GTMKAC 1 cut(s) 548
XspI CTAG 3 cut(s) 132, 416, 735
ZrmI AGTACT 1 cut(s) 733
Zsp2I ATGCAT 2 cut(s) 557, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.