Rorug05G0332800

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
40271635 .. 40272105
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0332800.1

Sequence Viewer

Length: 471 bp
ATGCGTGTTATCTTTGAAGAAGATGATCCCAAAAACTTCACAGTTCTGAAGGCAACCTCCGCTGAGTTCCCTGCTCTTAATGGTCAGAGTGTTTCATATGCAGTTCTTGAATTTCCTTCTGGCACTACTAACCCACCTCACACTCATCCTCGCTCTGCTGAGCTCCTCTTCCTTGTTGGCGGTTCCCTTGAAGTTGGCTTTGTCGACACAAAAAACAACCTCTTTACTCAGACTCTTCAGGTAGGTGACCTGTTTGTTTTTCCCAAGGGACTCGTGCACTTCCAATACAATGCTGACTCAGACAACCCAGCTATAGCAATTTCTGCTTTTGGAAGTGCAAGTGCAGGAACTGTGTCAATTCCTTCCACTTTGTTCGCCACCAACATCGATGACAATGTCTTGGCTCTGTCCTTCAAGACTGACGTAGCTACCATTCAAAAGATGAAGGCTGGTCTCGCTCCCAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

16.63

Weight (kDa)

4.99

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 10 - 145 1.4e-32 Cupin
Cupin_2 PF07883 35 - 108 7.8e-11 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 204
AciI CCGC 2 cut(s) 60, 180
AclWI GGATC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 110
AcuI CTGAAG 2 cut(s) 68, 221
AgsI TTSAA 5 cut(s) 17, 110, 191, 415, 437
AluBI AGCT 3 cut(s) 163, 311, 428
AluI AGCT 3 cut(s) 163, 311, 428
Alw21I GWGCWC 2 cut(s) 165, 279
Alw26I GTCTC 1 cut(s) 458
Alw44I GTGCAC 1 cut(s) 275
AlwI GGATC 1 cut(s) 20
AlwNI CAGNNNCTG 1 cut(s) 350
ApaLI GTGCAC 1 cut(s) 275
ApoI RAATTY 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 257
BaeGI GKGCMC 1 cut(s) 279
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 272
Bbv12I GWGCWC 2 cut(s) 165, 279
BcoDI GTCTC 1 cut(s) 458
BfmI CTRYAG 1 cut(s) 312
BlpI GCTNAGC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 184
Bpu1102I GCTNAGC 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 458
BsaJI CCNNGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 145
BseMII CTCAG 4 cut(s) 54, 150, 242, 312
BseRI GAGGAG 1 cut(s) 155
BseSI GKGCMC 1 cut(s) 279
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 363
BshVI ATCGAT 1 cut(s) 387
BsiHKAI GWGCWC 2 cut(s) 165, 279
BslFI GGGAC 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 165, 279
Bsp143I GATC 1 cut(s) 25
Bsp1720I GCTNAGC 1 cut(s) 159
BspACI CCGC 2 cut(s) 60, 180
BspCNI CTCAG 4 cut(s) 55, 151, 241, 311
BspDI ATCGAT 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 184
BspPI GGATC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 272
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 272
Bst4CI ACNGT 2 cut(s) 43, 352
Bst6I CTCTTC 2 cut(s) 173, 240
BstAPI GCANNNNNTGC 1 cut(s) 323
BstDEI CTNAG 4 cut(s) 63, 159, 228, 298
BstEII GGTNACC 1 cut(s) 245
BstF5I GGATG 1 cut(s) 145
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 3 cut(s) 59, 323, 455
BstPI GGTNACC 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 387
BsuTUI ATCGAT 1 cut(s) 387
BtsCI GGATG 1 cut(s) 145
CaiI CAGNNNCTG 1 cut(s) 350
ClaI ATCGAT 1 cut(s) 387
CviAII CATG 1 cut(s) 468
CviJI RGCY 7 cut(s) 163, 198, 311, 404, 428, 449, 466
CviKI_1 RGCY 7 cut(s) 163, 198, 311, 404, 428, 449, 466
DdeI CTNAG 4 cut(s) 63, 159, 228, 298
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 173, 240
EarI CTCTTC 2 cut(s) 173, 240
Ecl136II GAGCTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 458
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 68, 221
Eco91I GGTNACC 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 245
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 471
FaiI YATR 4 cut(s) 97, 99, 314, 469
FaqI GGGAC 1 cut(s) 282
FatI CATG 1 cut(s) 467
FauNDI CATATG 1 cut(s) 97
FblI GTMKAC 1 cut(s) 204
FokI GGATG 1 cut(s) 132
FriOI GRGCYC 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 311
Hin1II CATG 1 cut(s) 471
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HinfI GANTC 3 cut(s) 232, 270, 296
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 2 cut(s) 205, 277
Hpy188I TCNGA 4 cut(s) 48, 87, 231, 301
Hpy188III TCNNGA 2 cut(s) 107, 415
Hpy8I GTNNAC 2 cut(s) 205, 277
HpyAV CCTTC 5 cut(s) 43, 126, 372, 421, 439
HpyCH4III ACNGT 2 cut(s) 43, 352
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 4 cut(s) 101, 277, 338, 344
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 323, 455
HpyF3I CTNAG 4 cut(s) 63, 159, 228, 298
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 1 cut(s) 471
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 168, 463
LpnPI CCDG 7 cut(s) 84, 105, 224, 263, 321, 330, 435
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 4 cut(s) 29, 32, 160, 227
MhlI GDGCHC 2 cut(s) 165, 279
MluCI AATT 3 cut(s) 110, 318, 357
MlyI GAGTC 3 cut(s) 226, 264, 290
MnlI CCTC 5 cut(s) 67, 147, 159, 176, 230
MseI TTAA 1 cut(s) 78
MspA1I CMGCKG 1 cut(s) 62
MwoI GCNNNNNNNGC 3 cut(s) 59, 323, 455
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 471
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 1 cut(s) 245
PflFI GACNNNGTC 1 cut(s) 395
PleI GAGTC 3 cut(s) 226, 264, 290
PpsI GAGTC 3 cut(s) 226, 264, 290
Psp124BI GAGCTC 1 cut(s) 165
PspEI GGTNACC 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 184
PstNI CAGNNNCTG 1 cut(s) 350
PsyI GACNNNGTC 1 cut(s) 395
SacI GAGCTC 1 cut(s) 165
SalI GTCGAC 1 cut(s) 203
SaqAI TTAA 1 cut(s) 78
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 3 cut(s) 226, 264, 290
SduI GDGCHC 2 cut(s) 165, 279
SfcI CTRYAG 1 cut(s) 312
Sse9I AATT 3 cut(s) 110, 318, 357
SsiI CCGC 2 cut(s) 60, 180
SstI GAGCTC 1 cut(s) 165
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 43, 352
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 204, 387
TasI AATT 3 cut(s) 110, 318, 357
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 84, 458
Tth111I GACNNNGTC 1 cut(s) 395
VneI GTGCAC 1 cut(s) 275
XapI RAATTY 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.