RchiOBHm_Chr1g0347321

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
39936391 .. 39937172
782 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57345

Sequence Viewer

Length: 729 bp
ATGGTGTTATGGAACCCTTGTACTGGACAATCCAATTTGTTGCCAAAACTTACTGATCATTGCATTCCGCAGTTTCGCGGATTTGGTTTTAATTCCACTATGAAGTTTTGCGGATTTGGTTATGATTCCACTAATGATGATTATAAGGTAGTGAGAGGGTACAATCATAGAGTTAGGGGTTCTAAGGAAACCGTGGTTCAGGTCTTTAGTTTAAAATCAGGTTCATGGAGAACCCATGAGGGTCTCGGTTACTTTTTCTTCGCAGGGCCGGGGTGCTTGTTAAATGGTGCTCTGCATTGGCCAGAGACCTTATTCAATGATTTTCGTGCAACAGGGTCGAGGATTATCTCTTTCGATTTAGCAGAGGAAAAGTTTCAGGAGATGCTTCCATTGCCCTCTCAGACTGCAATGTGGACATGCAATGAGATCATCAGGTTTAGAATATGGATGATGAAGGAGTATGGGGTCCAGGAATCGTGGACTGAAGTTGCTTCTTTAGATATTTTACGAAAAGATTCTCAATTCTCACTCGTGACGCCTCTATGCATATTAGAGAATGGGGAAGGTTTGATCGCCAAGAGATATGATTTTGAGTCCTTAGTATTATATAGCTTCAAGGAACGGACATTTAGGAATGTTTTTAGGACCCACAACAAATGGAAATTTGATGCAGTCATTTACAGGGAGACTTTAGTTTCACCAATCACCAGTGGTATTACAGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

242

Amino Acids

28.0

Weight (kDa)

7.62

Isoelectric Point (pI)

30.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 1 - 168 7.6e-19 F-box associated beta propeller domain
FBA_3 PF08268 3 - 145 1.2e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
AccII CGCG 1 cut(s) 78
AciI CCGC 3 cut(s) 68, 78, 111
AcoI YGGCCR 1 cut(s) 299
AcsI RAATTY 1 cut(s) 662
AcuI CTGAAG 1 cut(s) 504
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 2 cut(s) 22, 161
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 2 cut(s) 316, 616
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 1 cut(s) 612
AluI AGCT 1 cut(s) 612
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 3 cut(s) 248, 299, 680
AoxI GGCC 2 cut(s) 266, 299
ApoI RAATTY 1 cut(s) 662
Asp700I GAANNNNTTC 2 cut(s) 372, 514
AspS9I GGNCC 3 cut(s) 266, 466, 645
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 2 cut(s) 690, 697
AvaII GGWCC 2 cut(s) 466, 645
BalI TGGCCA 1 cut(s) 301
BauI CACGAG 1 cut(s) 530
Bbv12I GWGCWC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 318, 352
BciT130I CCWGG 1 cut(s) 470
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 3 cut(s) 248, 299, 680
Bme1390I CCNGG 2 cut(s) 270, 470
Bme18I GGWCC 2 cut(s) 466, 645
BmgT120I GGNCC 3 cut(s) 266, 466, 645
BmiI GGNNCC 3 cut(s) 14, 467, 647
BmrFI CCNGG 2 cut(s) 270, 470
BmsI GCATC 2 cut(s) 372, 658
BpuMI CCSGG 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 536
BsaI GGTCTC 2 cut(s) 248, 299
BsaJI CCNNGG 2 cut(s) 192, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse1I ACTGG 2 cut(s) 28, 708
Bse3DI GCAATG 4 cut(s) 58, 389, 414, 427
BseBI CCWGG 1 cut(s) 470
BseDI CCNNGG 2 cut(s) 192, 269
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMI GCAATG 4 cut(s) 58, 389, 414, 427
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 2 cut(s) 28, 708
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 2 cut(s) 268, 301
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 3 cut(s) 248, 299, 680
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 268, 301
Bso31I GGTCTC 2 cut(s) 248, 299
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 3 cut(s) 55, 426, 570
BspACI CCGC 3 cut(s) 68, 78, 111
BspANI GGCC 2 cut(s) 268, 301
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 1 cut(s) 78
BspLI GGNNCC 3 cut(s) 14, 467, 647
BspTNI GGTCTC 2 cut(s) 248, 299
BsrDI GCAATG 4 cut(s) 58, 389, 414, 427
BsrI ACTGG 2 cut(s) 28, 708
BssECI CCNNGG 2 cut(s) 192, 269
BssMI GATC 3 cut(s) 55, 426, 570
BssNI GRCGYC 1 cut(s) 536
BssSI CACGAG 1 cut(s) 530
Bst2BI CACGAG 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 193
BstACI GRCGYC 1 cut(s) 536
BstDEI CTNAG 3 cut(s) 183, 399, 598
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 453
BstFNI CGCG 1 cut(s) 78
BstKTI GATC 3 cut(s) 58, 429, 573
BstMAI GTCTC 3 cut(s) 248, 299, 680
BstMBI GATC 3 cut(s) 55, 426, 570
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 470
BstNSI RCATGY 1 cut(s) 420
BstSCI CCNGG 2 cut(s) 268, 468
BstUI CGCG 1 cut(s) 78
BsuRI GGCC 2 cut(s) 268, 301
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 266, 466, 645
CseI GACGC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 21, 160
CviAII CATG 3 cut(s) 225, 236, 417
CviJI RGCY 3 cut(s) 268, 301, 612
CviKI_1 RGCY 3 cut(s) 268, 301, 612
CviQI GTAC 2 cut(s) 21, 160
DdeI CTNAG 3 cut(s) 183, 399, 598
DpnI GATC 3 cut(s) 57, 428, 572
DpnII GATC 3 cut(s) 55, 426, 570
DraI TTTAAA 1 cut(s) 213
EaeI YGGCCR 1 cut(s) 299
Eco31I GGTCTC 2 cut(s) 248, 299
Eco47I GGWCC 2 cut(s) 466, 645
Eco57I CTGAAG 1 cut(s) 504
EcoO109I RGGNCCY 1 cut(s) 645
EcoRII CCWGG 1 cut(s) 468
EcoT22I ATGCAT 1 cut(s) 548
FaeI CATG 3 cut(s) 228, 239, 420
FatI CATG 3 cut(s) 224, 235, 416
FbaI TGATCA 1 cut(s) 55
FokI GGATG 1 cut(s) 460
HaeIII GGCC 2 cut(s) 268, 301
HapII CCGG 1 cut(s) 269
HgaI GACGC 1 cut(s) 544
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 3 cut(s) 228, 239, 420
HinfI GANTC 4 cut(s) 125, 473, 515, 593
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 690, 697
Hpy166II GTNNAC 2 cut(s) 414, 480
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 377, 532
Hpy8I GTNNAC 2 cut(s) 414, 480
HpyAV CCTTC 2 cut(s) 448, 557
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 7 cut(s) 63, 295, 329, 407, 420, 546, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 3 cut(s) 183, 399, 598
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 3 cut(s) 228, 239, 420
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 426, 570
LweI GCATC 2 cut(s) 372, 658
MaeIII GTNAC 2 cut(s) 248, 532
MalI GATC 3 cut(s) 57, 428, 572
MboI GATC 3 cut(s) 55, 426, 570
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 301
MluCI AATT 4 cut(s) 34, 91, 521, 662
MluNI TGGCCA 1 cut(s) 301
MlyI GAGTC 1 cut(s) 602
MnlI CCTC 6 cut(s) 149, 232, 333, 358, 406, 549
Mox20I TGGCCA 1 cut(s) 301
Mph1103I ATGCAT 1 cut(s) 548
MroXI GAANNNNTTC 2 cut(s) 372, 514
MscI TGGCCA 1 cut(s) 301
MseI TTAA 3 cut(s) 90, 212, 281
Msp20I TGGCCA 1 cut(s) 301
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 270, 470
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 470
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 391
NciI CCSGG 1 cut(s) 270
NdeII GATC 3 cut(s) 55, 426, 570
NlaIII CATG 3 cut(s) 228, 239, 420
NlaIV GGNNCC 3 cut(s) 14, 467, 647
NmuCI GTSAC 1 cut(s) 532
NsiI ATGCAT 1 cut(s) 548
NspI RCATGY 1 cut(s) 420
PctI GAATGC 1 cut(s) 63
PdmI GAANNNNTTC 2 cut(s) 372, 514
PfeI GAWTC 3 cut(s) 125, 473, 515
PfoI TCCNGGA 1 cut(s) 468
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
PpuMI RGGWCCY 1 cut(s) 645
PsiI TTATAA 1 cut(s) 144
Psp5II RGGWCCY 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 3 cut(s) 14, 467, 647
PspPI GGNCC 3 cut(s) 266, 466, 645
PspPPI RGGWCCY 1 cut(s) 645
RsaI GTAC 2 cut(s) 22, 161
RsaNI GTAC 2 cut(s) 21, 160
SaqAI TTAA 3 cut(s) 90, 212, 281
Sau3AI GATC 3 cut(s) 55, 426, 570
Sau96I GGNCC 3 cut(s) 266, 466, 645
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 270, 470
SduI GDGCHC 1 cut(s) 292
SetI ASST 7 cut(s) 150, 204, 223, 311, 437, 568, 614
SfaNI GCATC 2 cut(s) 372, 658
SinI GGWCC 2 cut(s) 466, 645
Sse9I AATT 4 cut(s) 34, 91, 521, 662
SsiI CCGC 3 cut(s) 68, 78, 111
StyD4I CCNGG 2 cut(s) 268, 468
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 338, 354
TasI AATT 4 cut(s) 34, 91, 521, 662
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 3 cut(s) 125, 473, 515
Tru1I TTAA 3 cut(s) 90, 212, 281
Tru9I TTAA 3 cut(s) 90, 212, 281
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 3 cut(s) 116, 213, 467
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 1 cut(s) 715
VpaK11BI GGWCC 2 cut(s) 466, 645
XapI RAATTY 1 cut(s) 662
XceI RCATGY 1 cut(s) 420
XmnI GAANNNNTTC 2 cut(s) 372, 514
Zsp2I ATGCAT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.