RchiOBHm_Chr2g0154651

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000113
Physical Location & Seq
Reverse (-)
71749752 .. 71751183
1432 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52363

Sequence Viewer

Length: 528 bp
ATGGTTGGGGCAGGGTGTTCAGTTAACGAAGCTTTGCATTGGGTATTGAGGGAACAGGAAGATGGTAGGTTTATTGATTCAAGCATAGTGTCATTTGATCTAGCGGAGGAGAAATTTCATGAGATTCTGTTTCCCTATCCTCCCAATCCGGTGGACAGCCATGAATTGTTTGCCGGAGTGGGAATTCTTAATAATTGCCTAACTCTGGCCTTTCAAACCATGTGTGGCCGACTTGGGTGCAACTTTAAGATGTGGGTGATGAAGGACTACGGAGTCAAGGAATCTTGGAGTGAAGTCATAAACATCCCATCAGGGATTGCAAAGGATGAGTATGTGTTCTTCACATGCATTTCTGAGAATGGTGAAGTTTTGGTGCAGCTGAATTTGTTAGGCTCTTTGGAATTATATAATCCGAAGGGAAAGACATTTAGGACTCTTCTGGACTATAGTGGTCACTGGTATGGAGCTGCTACATACATAGAAACTTTAGTTTCACCCTTAATGGGCAGTACTGGCGCAATCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

175

Amino Acids

19.52

Weight (kDa)

4.72

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 5 - 109 1.7e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 272
AciI CCGC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 3 cut(s) 113, 183, 382
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 2 cut(s) 205, 503
AgsI TTSAA 2 cut(s) 81, 215
AluBI AGCT 3 cut(s) 32, 379, 467
AluI AGCT 3 cut(s) 32, 379, 467
AoxI GGCC 2 cut(s) 207, 226
ApeKI GCWGC 2 cut(s) 376, 467
ApoI RAATTY 3 cut(s) 113, 183, 382
AspLEI GCGC 1 cut(s) 518
AsuHPI GGTGA 3 cut(s) 268, 374, 486
BarI GAAGNNNNNNTAC 2 cut(s) 323, 355
BbvI GCAGC 2 cut(s) 388, 454
BccI CCATC 2 cut(s) 56, 316
BcgI CGANNNNNNTGC 2 cut(s) 219, 253
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 2 cut(s) 377, 468
BlsI GCNGC 2 cut(s) 378, 469
BmcAI AGTACT 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 503
Bse1I ACTGG 2 cut(s) 461, 517
BseGI GGATG 2 cut(s) 303, 331
BseLI CCNNNNNNNGG 2 cut(s) 205, 503
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 2 cut(s) 461, 517
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 388, 454
BsgI GTGCAG 1 cut(s) 395
BshFI GGCC 2 cut(s) 209, 228
BsiSI CCGG 2 cut(s) 149, 174
BslI CCNNNNNNNGG 2 cut(s) 205, 503
BsnI GGCC 2 cut(s) 209, 228
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 1 cut(s) 104
BspANI GGCC 2 cut(s) 209, 228
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 118
BsrI ACTGG 2 cut(s) 461, 517
BssMI GATC 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 441
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 303, 331
BstHHI GCGC 1 cut(s) 518
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 388, 454
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 209, 228
BtsCI GGATG 2 cut(s) 303, 331
BtsIMutI CAGTG 1 cut(s) 454
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 510
CviAII CATG 5 cut(s) 119, 161, 220, 345, 523
CviJI RGCY 7 cut(s) 32, 159, 209, 228, 379, 393, 467
CviKI_1 RGCY 7 cut(s) 32, 159, 209, 228, 379, 393, 467
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
DrdI GACNNNNNNGTC 1 cut(s) 272
DseDI GACNNNNNNGTC 1 cut(s) 272
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 441
EarI CTCTTC 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 183
EcoT22I ATGCAT 1 cut(s) 350
FaeI CATG 5 cut(s) 122, 164, 223, 348, 526
FatI CATG 5 cut(s) 118, 160, 219, 344, 522
Fnu4HI GCNGC 2 cut(s) 377, 468
FokI GGATG 2 cut(s) 290, 338
Fsp4HI GCNGC 2 cut(s) 377, 468
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 517
GluI GCNGC 2 cut(s) 377, 468
HaeIII GGCC 2 cut(s) 209, 228
HapII CCGG 2 cut(s) 149, 174
HhaI GCGC 1 cut(s) 518
Hin1II CATG 5 cut(s) 122, 164, 223, 348, 526
Hin6I GCGC 1 cut(s) 516
HinP1I GCGC 1 cut(s) 516
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 30
HinfI GANTC 5 cut(s) 77, 124, 273, 281, 433
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 2 cut(s) 149, 174
HphI GGTGA 3 cut(s) 268, 374, 486
Hpy166II GTNNAC 2 cut(s) 25, 154
Hpy188I TCNGA 2 cut(s) 355, 414
Hpy188III TCNNGA 2 cut(s) 119, 440
Hpy8I GTNNAC 2 cut(s) 25, 154
HpyAV CCTTC 2 cut(s) 256, 409
HpyCH4V TGCA 5 cut(s) 37, 240, 320, 348, 376
HpyF10VI GCNNNNNNNGC 1 cut(s) 513
HpyF3I CTNAG 1 cut(s) 354
Hsp92II CATG 5 cut(s) 122, 164, 223, 348, 526
HspAI GCGC 1 cut(s) 516
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 464
LpnPI CCDG 8 cut(s) 41, 162, 187, 191, 297, 425, 442, 498
Lsp1109I GCAGC 2 cut(s) 388, 454
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 452
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 71, 331, 428
MluCI AATT 6 cut(s) 113, 164, 183, 193, 382, 401
MlyI GAGTC 2 cut(s) 282, 427
MnlI CCTC 3 cut(s) 42, 100, 150
Mph1103I ATGCAT 1 cut(s) 350
MseI TTAA 4 cut(s) 24, 189, 246, 500
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 379
MspI CCGG 2 cut(s) 149, 174
MwoI GCNNNNNNNGC 1 cut(s) 513
NdeII GATC 1 cut(s) 97
NlaIII CATG 5 cut(s) 122, 164, 223, 348, 526
NmuCI GTSAC 1 cut(s) 452
NsiI ATGCAT 1 cut(s) 350
NspI RCATGY 1 cut(s) 348
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 3 cut(s) 77, 124, 281
PkrI GCNGC 2 cut(s) 378, 469
PleI GAGTC 2 cut(s) 281, 427
PpsI GAGTC 2 cut(s) 281, 427
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 1 cut(s) 459
SaqAI TTAA 4 cut(s) 24, 189, 246, 500
SatI GCNGC 2 cut(s) 377, 468
Sau3AI GATC 1 cut(s) 97
ScaI AGTACT 1 cut(s) 511
SchI GAGTC 2 cut(s) 282, 427
SetI ASST 4 cut(s) 34, 71, 381, 469
SfcI CTRYAG 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 6 cut(s) 113, 164, 183, 193, 382, 401
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 101
TasI AATT 6 cut(s) 113, 164, 183, 193, 382, 401
TatI WGTACW 1 cut(s) 509
TfiI GAWTC 3 cut(s) 77, 124, 281
Tru1I TTAA 4 cut(s) 24, 189, 246, 500
Tru9I TTAA 4 cut(s) 24, 189, 246, 500
TscAI CASTG 1 cut(s) 461
TseFI GTSAC 1 cut(s) 452
TseI GCWGC 2 cut(s) 376, 467
Tsp45I GTSAC 1 cut(s) 452
TspDTI ATGAA 3 cut(s) 107, 177, 275
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 461
XapI RAATTY 3 cut(s) 113, 183, 382
XceI RCATGY 1 cut(s) 348
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 511
Zsp2I ATGCAT 1 cut(s) 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.