RchiOBHm_Chr5g0060711

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000113
Physical Location & Seq
Forward (+)
65882475 .. 65885118
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33714

Sequence Viewer

Length: 924 bp
ATGGGCATCACGGAGAACAGCTCCAGGCTCCTTTATTCGATGGACCCTCCGCAATGTCTAGACCACGAGGCATTGAAGGATTTGAAGGATCATAGGGATGGTTATTTTGCCAACAGAGAGCTTGGTCTTCCGGTAATGTTGGCGGGCTACTCCAATTGCTATAAAATTATTTTTGGTAGTTGCAATGGTTTAATATGTATTTTCGTTGAAGGAGTCGACTTTATCTTATGGAATCCATGTACTGGATACTCCAAGGTGTTACCAAGAACTCCATTGCCCCTTTTTAATCCACTTAGTTGTTGCAATGGTGGGTTTGGTTATGATTCTGCTACTGATGATTACAAGCTAATAGTGGGGACTAAAGAAAATTCCATTCAGGTTTTCACTCTGAAAACGAGTTCATGGAAGGTGCTCCCCATTATCAATGCTCTTAACATCTCAGGTCGGGGGTTGTTTTTTAATGGAGCTTTGCACTGGTTGGCACAGAATCGCCAAACAATTTTGTCTTTTAATTTGGTGGAGGACAAGTTTCATCAGATGATTCCATTACCCTATGATGATGCTTGCTTTCAAGGTATGATGATCCATGGAAATTGTCTTTGTGTGTCTAATGTTGGCCACGATGGTCTTAACGCAATATGGTTGATGAAGGAGTATGGGGTCAAGCAATCTTGGACTCAAGTTATAAAGTTTTCTGCAAGGGCTATTCCTAGAGAGTACGGACACGTCTGCTTGTGGCCTATTTGTATTCTAGAGAGCGGAGAACTTTTGGTTAACAATGGGAGTACAGGTTTCTTGGTGTTATATGATCCAAAGGAAAACACATTCAAGAATGTTACCAAGATTCATGAATTGAATTGTGGAGCTTTAGTTTACAGAGAGACTTTAGTTTCACCAGTAACTGGCAGTGTTATAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

307

Amino Acids

34.31

Weight (kDa)

6.06

Isoelectric Point (pI)

24.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 53 - 280 3.5e-21 F-box associated beta propeller domain
FBA_1 PF07734 60 - 272 4.5e-22 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 686
AccB7I CCANNNNNTGG 2 cut(s) 242, 902
AccBSI CCGCTC 1 cut(s) 759
AccI GTMKAC 1 cut(s) 216
AciI CCGC 3 cut(s) 50, 143, 759
AclWI GGATC 3 cut(s) 96, 577, 803
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 1 cut(s) 367
AfaI GTAC 3 cut(s) 241, 719, 787
AfiI CCNNNNNNNGG 2 cut(s) 242, 902
AflIII ACRYGT 1 cut(s) 724
AgsI TTSAA 6 cut(s) 76, 85, 209, 572, 829, 856
AjiI CACGTC 1 cut(s) 727
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 5 cut(s) 21, 121, 346, 467, 866
AluI AGCT 5 cut(s) 21, 121, 346, 467, 866
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 1 cut(s) 875
AlwI GGATC 3 cut(s) 96, 577, 803
AlwNI CAGNNNCTG 1 cut(s) 902
AoxI GGCC 2 cut(s) 616, 737
ApoI RAATTY 1 cut(s) 367
AspS9I GGNCC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 885
AvaII GGWCC 1 cut(s) 43
BalI TGGCCA 1 cut(s) 618
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 414
BccI CCATC 3 cut(s) 34, 92, 617
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 875
BfaI CTAG 3 cut(s) 59, 711, 752
BfuI GTATCC 1 cut(s) 239
Bme1390I CCNGG 1 cut(s) 25
Bme18I GGWCC 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 2 cut(s) 29, 45
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 2 cut(s) 15, 550
BpiI GAAGAC 1 cut(s) 119
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 663
BsaJI CCNNGG 2 cut(s) 252, 586
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 6 cut(s) 512, 542, 775, 805, 855, 885
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 902
Bse1I ACTGG 4 cut(s) 247, 479, 896, 907
Bse3DI GCAATG 4 cut(s) 59, 190, 272, 310
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 2 cut(s) 252, 586
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 242, 902
BseMI GCAATG 4 cut(s) 59, 190, 272, 310
BseMII CTCAG 1 cut(s) 453
BseNI ACTGG 4 cut(s) 247, 479, 896, 907
BshFI GGCC 2 cut(s) 618, 739
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 242, 902
BsmAI GTCTC 1 cut(s) 875
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 2 cut(s) 618, 739
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 3 cut(s) 88, 582, 808
Bsp19I CCATGG 1 cut(s) 586
BspACI CCGC 3 cut(s) 50, 143, 759
BspANI GGCC 2 cut(s) 618, 739
BspCNI CTCAG 1 cut(s) 452
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 2 cut(s) 29, 45
BspPI GGATC 3 cut(s) 96, 577, 803
BsrBI CCGCTC 1 cut(s) 759
BsrDI GCAATG 4 cut(s) 59, 190, 272, 310
BsrI ACTGG 4 cut(s) 247, 479, 896, 907
BssECI CCNNGG 2 cut(s) 252, 586
BssMI GATC 3 cut(s) 88, 582, 808
BssSI CACGAG 1 cut(s) 65
BssT1I CCWWGG 2 cut(s) 252, 586
Bst2BI CACGAG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 25
BstC8I GCNNGC 2 cut(s) 145, 565
BstDEI CTNAG 2 cut(s) 293, 439
BstDSI CCRYGG 1 cut(s) 586
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 3 cut(s) 91, 585, 811
BstMAI GTCTC 1 cut(s) 875
BstMBI GATC 3 cut(s) 88, 582, 808
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 119
BsuI GTATCC 1 cut(s) 239
BsuRI GGCC 2 cut(s) 618, 739
BtgI CCRYGG 1 cut(s) 586
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 2 cut(s) 472, 913
Cac8I GCNNGC 2 cut(s) 145, 565
CaiI CAGNNNCTG 1 cut(s) 902
CciI TCATGA 1 cut(s) 847
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 240, 718, 786
CviAII CATG 4 cut(s) 237, 402, 587, 848
CviQI GTAC 3 cut(s) 240, 718, 786
DdeI CTNAG 2 cut(s) 293, 439
DpnI GATC 3 cut(s) 90, 584, 810
DpnII GATC 3 cut(s) 88, 582, 808
EaeI YGGCCR 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 252, 586
Eco47I GGWCC 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 252, 586
ErhI CCWWGG 2 cut(s) 252, 586
FaeI CATG 4 cut(s) 240, 405, 590, 851
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 236, 401, 586, 847
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 216
FokI GGATG 1 cut(s) 110
FspBI CTAG 3 cut(s) 59, 711, 752
GsuI CTGGAG 1 cut(s) 7
HaeIII GGCC 2 cut(s) 618, 739
HapII CCGG 1 cut(s) 131
Hin1II CATG 4 cut(s) 240, 405, 590, 851
HincII GTYRAC 2 cut(s) 217, 775
HindII GTYRAC 2 cut(s) 217, 775
HinfI GANTC 7 cut(s) 213, 232, 323, 487, 541, 676, 844
HpaI GTTAAC 1 cut(s) 775
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 885
Hpy166II GTNNAC 3 cut(s) 217, 775, 874
Hpy188I TCNGA 3 cut(s) 390, 537, 923
Hpy188III TCNNGA 4 cut(s) 59, 752, 829, 848
Hpy8I GTNNAC 3 cut(s) 217, 775, 874
HpyAV CCTTC 5 cut(s) 70, 79, 203, 400, 643
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 4 cut(s) 183, 303, 472, 698
HpyF3I CTNAG 2 cut(s) 293, 439
HpySE526I ACGT 1 cut(s) 726
Hsp92II CATG 4 cut(s) 240, 405, 590, 851
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 3 cut(s) 88, 582, 808
LmnI GCTCC 5 cut(s) 26, 33, 417, 464, 863
LweI GCATC 2 cut(s) 15, 550
MaeI CTAG 3 cut(s) 59, 711, 752
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 3 cut(s) 258, 835, 898
MalI GATC 3 cut(s) 90, 584, 810
MbiI CCGCTC 1 cut(s) 759
MboI GATC 3 cut(s) 88, 582, 808
MboII GAAGA 1 cut(s) 119
MfeI CAATTG 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 414
MlsI TGGCCA 1 cut(s) 618
MluCI AATT 8 cut(s) 154, 165, 367, 498, 511, 592, 851, 856
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 2 cut(s) 222, 670
MnlI CCTC 3 cut(s) 57, 61, 514
Mox20I TGGCCA 1 cut(s) 618
MscI TGGCCA 1 cut(s) 618
MseI TTAA 7 cut(s) 191, 285, 432, 459, 510, 630, 774
MslI CAYNNNNRTG 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 25
MunI CAATTG 1 cut(s) 154
MvaI CCWGG 1 cut(s) 25
NcoI CCATGG 1 cut(s) 586
NdeII GATC 3 cut(s) 88, 582, 808
NlaIII CATG 4 cut(s) 240, 405, 590, 851
NlaIV GGNNCC 2 cut(s) 29, 45
PagI TCATGA 1 cut(s) 847
PfeI GAWTC 5 cut(s) 232, 323, 487, 541, 844
PflMI CCANNNNNTGG 2 cut(s) 242, 902
PleI GAGTC 2 cut(s) 221, 670
PpsI GAGTC 2 cut(s) 221, 670
PsiI TTATAA 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 29, 45
PspPI GGNCC 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 902
RsaI GTAC 3 cut(s) 241, 719, 787
RsaNI GTAC 3 cut(s) 240, 718, 786
RseI CAYNNNNRTG 1 cut(s) 96
SalI GTCGAC 1 cut(s) 215
SaqAI TTAA 7 cut(s) 191, 285, 432, 459, 510, 630, 774
Sau3AI GATC 3 cut(s) 88, 582, 808
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 2 cut(s) 222, 670
ScrFI CCNGG 1 cut(s) 25
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 2 cut(s) 15, 550
SinI GGWCC 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 1 cut(s) 678
SmoI CTYRAG 1 cut(s) 678
Sse9I AATT 8 cut(s) 154, 165, 367, 498, 511, 592, 851, 856
SsiI CCGC 3 cut(s) 50, 143, 759
SspMI CTAG 3 cut(s) 59, 711, 752
StyD4I CCNGG 1 cut(s) 23
StyI CCWWGG 2 cut(s) 252, 586
TaiI ACGT 1 cut(s) 729
TaqI TCGA 2 cut(s) 38, 216
TasI AATT 8 cut(s) 154, 165, 367, 498, 511, 592, 851, 856
TatI WGTACW 2 cut(s) 239, 785
TfiI GAWTC 5 cut(s) 232, 323, 487, 541, 844
Tru1I TTAA 7 cut(s) 191, 285, 432, 459, 510, 630, 774
Tru9I TTAA 7 cut(s) 191, 285, 432, 459, 510, 630, 774
TscAI CASTG 2 cut(s) 479, 913
TspDTI ATGAA 5 cut(s) 390, 521, 662, 836, 864
TspGWI ACGGA 2 cut(s) 26, 735
TspRI CASTG 2 cut(s) 479, 913
Van91I CCANNNNNTGG 2 cut(s) 242, 902
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 1 cut(s) 367
XbaI TCTAGA 2 cut(s) 58, 751
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 59, 711, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.