Rmu_sc0001004.1_g000035

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001004.1
OG0000113
Physical Location & Seq
Forward (+)
128283 .. 129163
881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001004.1_g000035.1.cds

Sequence Viewer

Length: 825 bp
atgaaggttgatgttcatggtgctggtggtcagtttgcagtcactcagctgaattttccggtaacgaaatctatccctgattacggttatagagttgttgtgggttcttgcaatggcttggtatgtgtagaagttgaccgcgaggccattatgttatggaacccttgtactagagacttcaaggttttaccaaaacctcctcgagttataaactccgagtttagctacgattttaatggattcgggtatgattctgctagtgacgactacaaggtgatacggggttcatggaggactgtcgaagacattgattatgttacattagtaatgcggcaggggttcttcttaaacagagctctgcattggctatgtaatctacctgaagggggctcaagaattgtgtcttttgatttagaggcggagaaatttcagaagacgattccattaccctatgatgactggttttttgatctcttgattcatgaaaattgcctctgtgtacttgcttgtccaactggaaccaacactttcaacatatggatgatgaaagaatatggggtccaggaatcctggactgaagtcttacaattttctttggcgaagtatgcatcgcattatgatgattgtagatgttatttcacacctctgtgcattttagagaatggtgtagttttgattgacgagattggtgagggtcaacacctcatggtattatctaatctaaaggagaaggaattcaagcatgttgttgaggtcgcgaagaacttggagtttagaacagtcatttaccgagagacattagtttcaccagacgtccacacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

274

Amino Acids

31.47

Weight (kDa)

5.03

Isoelectric Point (pI)

25.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AatII GACGTC 1 cut(s) 816
AccII CGCG 2 cut(s) 141, 758
AciI CCGC 3 cut(s) 139, 331, 419
AcsI RAATTY 3 cut(s) 52, 425, 734
AcuI CTGAAG 2 cut(s) 402, 597
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 2 cut(s) 169, 501
AfiI CCNNNNNNNGG 2 cut(s) 83, 386
AgsI TTSAA 3 cut(s) 181, 532, 739
AjnI CCWGG 2 cut(s) 561, 569
AleI CACNNNNGTG 1 cut(s) 646
AluBI AGCT 3 cut(s) 49, 225, 356
AluI AGCT 3 cut(s) 49, 225, 356
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 2 cut(s) 168, 788
Ama87I CYCGRG 1 cut(s) 201
AoxI GGCC 1 cut(s) 144
ApoI RAATTY 3 cut(s) 52, 425, 734
ArsI GACNNNNNNTTYG 2 cut(s) 449, 481
Asp700I GAANNNNTTC 1 cut(s) 734
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 286, 701, 798
AvaI CYCGRG 1 cut(s) 201
AvaII GGWCC 1 cut(s) 559
BanII GRGCYC 2 cut(s) 358, 392
BbsI GAAGAC 2 cut(s) 309, 440
Bbv12I GWGCWC 1 cut(s) 358
BciT130I CCWGG 2 cut(s) 563, 571
BcoDI GTCTC 2 cut(s) 168, 788
BfaI CTAG 2 cut(s) 171, 258
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 563, 571
Bme18I GGWCC 1 cut(s) 559
BmeT110I CYCGRG 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 3 cut(s) 161, 520, 560
BmrFI CCNGG 2 cut(s) 563, 571
BmsI GCATC 1 cut(s) 617
BoxI GACNNNNGTC 1 cut(s) 578
BpiI GAAGAC 2 cut(s) 309, 440
BpuEI CTTGAG 1 cut(s) 376
BsaHI GRCGYC 1 cut(s) 813
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 386
Bse1I ACTGG 2 cut(s) 464, 520
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 563, 571
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 2 cut(s) 83, 386
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 2 cut(s) 464, 520
BseRI GAGGAG 1 cut(s) 189
Bsh1236I CGCG 2 cut(s) 141, 758
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 358
BsiHKCI CYCGRG 1 cut(s) 201
BsiSI CCGG 1 cut(s) 59
BslI CCNNNNNNNGG 2 cut(s) 83, 386
BsmAI GTCTC 2 cut(s) 168, 788
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 358, 392
Bsp143I GATC 1 cut(s) 469
Bsp68I TCGCGA 1 cut(s) 758
BspACI CCGC 3 cut(s) 139, 331, 419
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 58
BspFNI CGCG 2 cut(s) 141, 758
BspHI TCATGA 1 cut(s) 481
BspLI GGNNCC 3 cut(s) 161, 520, 560
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 2 cut(s) 464, 520
BssMI GATC 1 cut(s) 469
BssNI GRCGYC 1 cut(s) 813
Bst2UI CCWGG 2 cut(s) 563, 571
Bst4CI ACNGT 3 cut(s) 86, 298, 781
BstACI GRCGYC 1 cut(s) 813
BstDEI CTNAG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 2 cut(s) 141, 758
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 2 cut(s) 168, 788
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 2 cut(s) 563, 571
BstNSI RCATGY 1 cut(s) 746
BstPAI GACNNNNGTC 1 cut(s) 578
BstSCI CCNGG 2 cut(s) 561, 569
BstUI CGCG 2 cut(s) 141, 758
BstV2I GAAGAC 2 cut(s) 309, 440
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 546
BtuMI TCGCGA 1 cut(s) 758
CciI TCATGA 1 cut(s) 481
Cfr13I GGNCC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 168, 500
CviAII CATG 5 cut(s) 17, 288, 482, 706, 743
CviJI RGCY 7 cut(s) 49, 117, 146, 225, 356, 367, 390
CviKI_1 RGCY 7 cut(s) 49, 117, 146, 225, 356, 367, 390
CviQI GTAC 2 cut(s) 168, 500
DdeI CTNAG 1 cut(s) 45
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 356
Eco24I GRGCYC 2 cut(s) 358, 392
Eco47I GGWCC 1 cut(s) 559
Eco53kI GAGCTC 1 cut(s) 356
Eco57I CTGAAG 2 cut(s) 402, 597
Eco88I CYCGRG 1 cut(s) 201
EcoICRI GAGCTC 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 734
EcoRII CCWGG 2 cut(s) 561, 569
EcoT22I ATGCAT 1 cut(s) 610
EcoT38I GRGCYC 2 cut(s) 358, 392
FaeI CATG 5 cut(s) 20, 291, 485, 709, 746
FatI CATG 5 cut(s) 16, 287, 481, 705, 742
FauNDI CATATG 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 1 cut(s) 553
FriOI GRGCYC 2 cut(s) 358, 392
Fsp4HI GCNGC 1 cut(s) 332
FspBI CTAG 2 cut(s) 171, 258
GluI GCNGC 1 cut(s) 332
HaeIII GGCC 1 cut(s) 146
HapII CCGG 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 5 cut(s) 20, 291, 485, 709, 746
HincII GTYRAC 2 cut(s) 136, 698
HindII GTYRAC 2 cut(s) 136, 698
HinfI GANTC 5 cut(s) 240, 251, 439, 478, 566
HpaII CCGG 1 cut(s) 59
HphI GGTGA 3 cut(s) 286, 701, 798
Hpy166II GTNNAC 4 cut(s) 136, 500, 698, 817
Hpy188I TCNGA 2 cut(s) 217, 432
Hpy188III TCNNGA 4 cut(s) 393, 475, 482, 757
Hpy8I GTNNAC 4 cut(s) 136, 500, 698, 817
HpyAV CCTTC 2 cut(s) 377, 724
HpyCH4III ACNGT 3 cut(s) 86, 298, 781
HpyCH4IV ACGT 1 cut(s) 813
HpyCH4V TGCA 5 cut(s) 38, 111, 361, 608, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 813
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 5 cut(s) 20, 291, 485, 709, 746
Kzo9I GATC 1 cut(s) 469
LweI GCATC 1 cut(s) 617
MaeI CTAG 2 cut(s) 171, 258
MaeII ACGT 1 cut(s) 813
MaeIII GTNAC 4 cut(s) 40, 61, 260, 316
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 4 cut(s) 314, 334, 445, 772
MhlI GDGCHC 2 cut(s) 358, 392
MluCI AATT 6 cut(s) 52, 396, 425, 487, 587, 734
MmeI TCCRAC 1 cut(s) 536
Mph1103I ATGCAT 1 cut(s) 610
MroXI GAANNNNTTC 1 cut(s) 734
MseI TTAA 2 cut(s) 234, 347
MslI CAYNNNNRTG 3 cut(s) 539, 618, 646
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 2 cut(s) 563, 571
MvaI CCWGG 2 cut(s) 563, 571
MvnI CGCG 2 cut(s) 141, 758
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeI CATATG 1 cut(s) 536
NdeII GATC 1 cut(s) 469
NlaIII CATG 5 cut(s) 20, 291, 485, 709, 746
NlaIV GGNNCC 3 cut(s) 161, 520, 560
NmuCI GTSAC 2 cut(s) 40, 260
NruI TCGCGA 1 cut(s) 758
NsiI ATGCAT 1 cut(s) 610
NspI RCATGY 1 cut(s) 746
OliI CACNNNNGTG 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 201
PagI TCATGA 1 cut(s) 481
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 5 cut(s) 240, 251, 439, 478, 566
PfoI TCCNGGA 2 cut(s) 561, 569
PkrI GCNGC 1 cut(s) 333
PshAI GACNNNNGTC 1 cut(s) 578
PsiI TTATAA 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 358
Psp6I CCWGG 2 cut(s) 561, 569
PspGI CCWGG 2 cut(s) 561, 569
PspN4I GGNNCC 3 cut(s) 161, 520, 560
PspPI GGNCC 1 cut(s) 559
PspXI VCTCGAGB 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 49
RruI TCGCGA 1 cut(s) 758
RsaI GTAC 2 cut(s) 169, 501
RsaNI GTAC 2 cut(s) 168, 500
RseI CAYNNNNRTG 3 cut(s) 539, 618, 646
SacI GAGCTC 1 cut(s) 358
SaqAI TTAA 2 cut(s) 234, 347
SatI GCNGC 1 cut(s) 332
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 1 cut(s) 559
ScrFI CCNGG 2 cut(s) 563, 571
SduI GDGCHC 2 cut(s) 358, 392
SfaNI GCATC 1 cut(s) 617
Sfr274I CTCGAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 559
SlaI CTCGAG 1 cut(s) 201
SmiMI CAYNNNNRTG 3 cut(s) 539, 618, 646
SmlI CTYRAG 2 cut(s) 201, 391
SmoI CTYRAG 2 cut(s) 201, 391
Sse9I AATT 6 cut(s) 52, 396, 425, 487, 587, 734
SsiI CCGC 3 cut(s) 139, 331, 419
SspMI CTAG 2 cut(s) 171, 258
SstI GAGCTC 1 cut(s) 358
StyD4I CCNGG 2 cut(s) 561, 569
TaaI ACNGT 3 cut(s) 86, 298, 781
TaiI ACGT 1 cut(s) 816
TaqI TCGA 2 cut(s) 202, 300
TasI AATT 6 cut(s) 52, 396, 425, 487, 587, 734
TatI WGTACW 2 cut(s) 167, 499
TauI GCSGC 1 cut(s) 334
TfiI GAWTC 5 cut(s) 240, 251, 439, 478, 566
Tru1I TTAA 2 cut(s) 234, 347
Tru9I TTAA 2 cut(s) 234, 347
TseFI GTSAC 2 cut(s) 40, 260
Tsp45I GTSAC 2 cut(s) 40, 260
TspDTI ATGAA 6 cut(s) 5, 17, 276, 470, 498, 560
VpaK11BI GGWCC 1 cut(s) 559
XapI RAATTY 3 cut(s) 52, 425, 734
XceI RCATGY 1 cut(s) 746
XhoI CTCGAG 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 2 cut(s) 171, 258
ZraI GACGTC 1 cut(s) 814
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.