Rw1G007390

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
15613875 .. 15614408
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G007390.1

Sequence Viewer

Length: 534 bp
ATGAGATACTGGCAAGGGCTACCGGTCAAATCACTGATGCGATTTCGCTGCGTCTGCAAGTCATGGCGTGCTCTCATCTCCCAGTCTCGTTTTGGCACCGAGCACTTCAACTACGCAAGCAAAGGCTTCACCGAGAACACCTCCAGGCTAGTGATATCAATGAGTTCTCTCCAATCCCGAGACTGTGAAGCATCCAAGGACTTATCCCTAGACTGTGAGGCATTGAAGGATGATGGAGATGCTCATCTTGCAATTGGAAAGCTCGAGTTTCCGGTAATGTTCCCTAATTCCAGTCGTAGAAATATTGTGGGTTCTTGCAATGGCCTGATTTGTGTAGAAATTGACCAGAAAGACATGGTGTTATGGAACCCTTGTACTGGACAATCCAATTTGTTGCCAAAACCTACTGATCATTGCATTCCGCAGTTTTCTGGATTTGGTTATGATTCCACTAATGATGATTATAAGGTAGTGAGAGGGTACAATCATAGAGTTAGGGGTTCTGAGGAAACCATGGTTCAGGTTTTAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

20.03

Weight (kDa)

7.56

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 31 3.8e-06 F-box domain
FBA_3 PF08268 89 - 173 6.1e-13 F-box associated beta propeller domain
FBA_1 PF07734 100 - 162 1e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 1 cut(s) 422
AfaI GTAC 2 cut(s) 376, 482
AfiI CCNNNNNNNGG 1 cut(s) 377
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 2 cut(s) 109, 226
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 1 cut(s) 262
AluI AGCT 1 cut(s) 262
Alw21I GWGCWC 2 cut(s) 73, 105
Alw26I GTCTC 2 cut(s) 90, 174
Ama87I CYCGRG 2 cut(s) 177, 263
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 48
AsiGI ACCGGT 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 2 cut(s) 177, 263
BanI GGYRCC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 73, 105
BbvI GCAGC 1 cut(s) 35
BccI CCATC 1 cut(s) 227
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 2 cut(s) 90, 174
BfaI CTAG 2 cut(s) 149, 209
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 1 cut(s) 145
BmeT110I CYCGRG 2 cut(s) 177, 263
BmiI GGNNCC 2 cut(s) 97, 368
BmrFI CCNGG 1 cut(s) 145
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 3 cut(s) 27, 200, 229
BmuI ACTGGG 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 195, 513
BsaWI WCCGGW 2 cut(s) 22, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 377
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 4 cut(s) 14, 82, 291, 382
Bse3DI GCAATG 2 cut(s) 325, 412
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 195, 513
BseGI GGATG 2 cut(s) 191, 235
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 1 cut(s) 377
BseMI GCAATG 2 cut(s) 325, 412
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 4 cut(s) 14, 82, 291, 382
BseXI GCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 95
BshTI ACCGGT 1 cut(s) 22
BsiHKAI GWGCWC 2 cut(s) 73, 105
BsiHKCI CYCGRG 2 cut(s) 177, 263
BsiSI CCGG 2 cut(s) 23, 272
BslI CCNNNNNNNGG 1 cut(s) 377
BsmAI GTCTC 2 cut(s) 90, 174
BsmI GAATGC 1 cut(s) 417
BsnI GGCC 1 cut(s) 324
BsoBI CYCGRG 2 cut(s) 177, 263
Bsp1286I GDGCHC 2 cut(s) 73, 105
Bsp143I GATC 1 cut(s) 409
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 1 cut(s) 422
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 2 cut(s) 97, 368
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 2 cut(s) 325, 412
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 4 cut(s) 14, 82, 291, 382
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 195, 513
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 2 cut(s) 195, 513
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 2 cut(s) 185, 215
BstC8I GCNNGC 2 cut(s) 69, 118
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 2 cut(s) 191, 235
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 2 cut(s) 90, 174
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 2 cut(s) 54, 248
BstNI CCWGG 1 cut(s) 145
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 2 cut(s) 191, 235
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 2 cut(s) 69, 118
Cfr10I RCCGGY 1 cut(s) 22
CseI GACGC 1 cut(s) 40
Csp6I GTAC 2 cut(s) 375, 481
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 3 cut(s) 63, 355, 514
CviJI RGCY 5 cut(s) 19, 126, 148, 262, 324
CviKI_1 RGCY 5 cut(s) 19, 126, 148, 262, 324
CviQI GTAC 2 cut(s) 375, 481
DdeI CTNAG 1 cut(s) 504
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
Eco130I CCWWGG 2 cut(s) 195, 513
Eco32I GATATC 1 cut(s) 156
Eco88I CYCGRG 2 cut(s) 177, 263
EcoRII CCWGG 1 cut(s) 143
EcoRV GATATC 1 cut(s) 156
EcoT14I CCWWGG 2 cut(s) 195, 513
ErhI CCWWGG 2 cut(s) 195, 513
FaeI CATG 3 cut(s) 66, 358, 517
FaiI YATR 7 cut(s) 64, 356, 364, 444, 465, 489, 515
FatI CATG 3 cut(s) 62, 354, 513
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 1 cut(s) 49
FokI GGATG 2 cut(s) 178, 242
Fsp4HI GCNGC 1 cut(s) 49
FspBI CTAG 2 cut(s) 149, 209
GluI GCNGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 127
HaeIII GGCC 1 cut(s) 324
HapII CCGG 2 cut(s) 23, 272
HgaI GACGC 1 cut(s) 40
Hin1II CATG 3 cut(s) 66, 358, 517
HinfI GANTC 1 cut(s) 446
HpaII CCGG 2 cut(s) 23, 272
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 2 cut(s) 177, 432
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 2 cut(s) 185, 215
HpyCH4V TGCA 4 cut(s) 57, 251, 318, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 248
HpyF3I CTNAG 1 cut(s) 504
Hsp92II CATG 3 cut(s) 66, 358, 517
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 1 cut(s) 409
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 3 cut(s) 27, 200, 229
MaeI CTAG 2 cut(s) 149, 209
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 73, 105
MluCI AATT 4 cut(s) 252, 286, 339, 388
MnlI CCTC 4 cut(s) 151, 211, 470, 499
MseI TTAA 1 cut(s) 532
MspI CCGG 2 cut(s) 23, 272
MspR9I CCNGG 1 cut(s) 145
MunI CAATTG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 417
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 2 cut(s) 54, 248
NcoI CCATGG 1 cut(s) 513
NdeII GATC 1 cut(s) 409
NlaIII CATG 3 cut(s) 66, 358, 517
NlaIV GGNNCC 2 cut(s) 97, 368
PaeR7I CTCGAG 1 cut(s) 263
PctI GAATGC 1 cut(s) 417
PfeI GAWTC 1 cut(s) 446
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 1 cut(s) 50
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 97, 368
PspXI VCTCGAGB 1 cut(s) 263
RsaI GTAC 2 cut(s) 376, 482
RsaNI GTAC 2 cut(s) 375, 481
SaqAI TTAA 1 cut(s) 532
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 1 cut(s) 409
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 2 cut(s) 73, 105
SetI ASST 5 cut(s) 143, 264, 406, 471, 525
SfaNI GCATC 3 cut(s) 27, 200, 229
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 4 cut(s) 252, 286, 339, 388
SsiI CCGC 1 cut(s) 422
SspI AATATT 1 cut(s) 304
SspMI CTAG 2 cut(s) 149, 209
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 2 cut(s) 195, 513
TaaI ACNGT 2 cut(s) 185, 215
TaqI TCGA 1 cut(s) 264
TasI AATT 4 cut(s) 252, 286, 339, 388
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 1 cut(s) 446
Tru1I TTAA 1 cut(s) 532
Tru9I TTAA 1 cut(s) 532
TscAI CASTG 1 cut(s) 39
TseI GCWGC 1 cut(s) 48
TspRI CASTG 1 cut(s) 39
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 2 cut(s) 149, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.