Rorug01G0186100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000113
Physical Location & Seq
Forward (+)
25782863 .. 25783807
945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0186100.1

Sequence Viewer

Length: 498 bp
ATGCTGGACATGGTTGCGTTTGTTGACCCTTCACTTATTGGTGCTGTGGGGTGTGGGAATGGAACTGTCAAGGCCCAACACATGAAAGATAGGCTTGTAACTGCTAAACCAGGTGATCATTGGATGTTGACACTTGTTGATCCGGAGAAAGGAACCGCCTATTTTATGGACGTGCTGAATAGATGCTTACCTACAGGAGATTGGATGTCTATCGTGGATATTGCTATGCGTATGTATAATGCTGAAAAGAATAAGCAAAGCCGATGTTCAGTCCATTGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGCGAGTACTTTATCATGCGATACATGAGAGATATCATTGAGGATAAAGACATGTCATTGTTTCCTTCCAAGTGGAAGAGGAGAGGCAACAGCCAATACACCCAAACGGATATTGATCAAGTGCGAAATGAGTGGGGGAAGTTTGTTGTCAACACATGTGCACGAGTCATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

165

Amino Acids

19.0

Weight (kDa)

8.8

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 38 - 152 8.2e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 1 cut(s) 156
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 1 cut(s) 283
AfaI GTAC 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 2 cut(s) 372, 476
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 109
Alw21I GWGCWC 1 cut(s) 484
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 72
ApaLI GTGCAC 1 cut(s) 480
ApoI RAATTY 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 484
BauI CACGAG 1 cut(s) 483
Bbv12I GWGCWC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 2 cut(s) 115, 436
BfaI CTAG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 192
BmcAI AGTACT 1 cut(s) 329
Bme1390I CCNGG 1 cut(s) 111
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 1 cut(s) 173
BsaBI GATNNNNATC 2 cut(s) 209, 435
BsaWI WCCGGW 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse8I GATNNNNATC 2 cut(s) 209, 435
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 129, 210
BseJI GATNNNNATC 2 cut(s) 209, 435
BseLI CCNNNNNNNGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 415
BseSI GKGCMC 1 cut(s) 484
BshFI GGCC 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 149
BsmI GAATGC 1 cut(s) 294
BsnI GGCC 1 cut(s) 74
Bsp1286I GDGCHC 1 cut(s) 484
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 3 cut(s) 115, 139, 436
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 74
BspEI TCCGGA 1 cut(s) 142
BspHI TCATGA 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 154
BspPI GGATC 1 cut(s) 134
BssMI GATC 3 cut(s) 115, 139, 436
BssSI CACGAG 1 cut(s) 483
Bst2BI CACGAG 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 292
BstF5I GGATG 2 cut(s) 129, 210
BstKTI GATC 3 cut(s) 118, 142, 439
BstMBI GATC 3 cut(s) 115, 139, 436
BstNI CCWGG 1 cut(s) 111
BstNSI RCATGY 2 cut(s) 376, 480
BstSCI CCNGG 1 cut(s) 109
BstSFI CTRYAG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 484
BsuRI GGCC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 129, 210
Cac8I GCNNGC 1 cut(s) 292
CciI TCATGA 1 cut(s) 489
Cfr13I GGNCC 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 1 cut(s) 328
CviAII CATG 7 cut(s) 10, 82, 337, 346, 373, 477, 490
CviJI RGCY 5 cut(s) 74, 94, 261, 290, 414
CviKI_1 RGCY 5 cut(s) 74, 94, 261, 290, 414
CviQI GTAC 1 cut(s) 328
DpnI GATC 3 cut(s) 117, 141, 438
DpnII GATC 3 cut(s) 115, 139, 436
Eam1104I CTCTTC 1 cut(s) 392
EarI CTCTTC 1 cut(s) 392
Eco32I GATATC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 109
EcoRV GATATC 1 cut(s) 355
FaeI CATG 7 cut(s) 13, 85, 340, 349, 376, 480, 493
FalI AAGNNNNNCTT 2 cut(s) 78, 110
FatI CATG 7 cut(s) 9, 81, 336, 345, 372, 476, 489
FbaI TGATCA 2 cut(s) 115, 436
FokI GGATG 2 cut(s) 136, 217
FspBI CTAG 1 cut(s) 309
HaeIII GGCC 1 cut(s) 74
HapII CCGG 1 cut(s) 143
Hin1II CATG 7 cut(s) 13, 85, 340, 349, 376, 480, 493
HincII GTYRAC 3 cut(s) 25, 129, 472
HindII GTYRAC 3 cut(s) 25, 129, 472
HinfI GANTC 1 cut(s) 486
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 4 cut(s) 25, 129, 472, 482
Hpy188III TCNNGA 2 cut(s) 143, 490
Hpy8I GTNNAC 4 cut(s) 25, 129, 472, 482
HpyAV CCTTC 2 cut(s) 39, 396
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 7 cut(s) 13, 85, 340, 349, 376, 480, 493
Kpn2I TCCGGA 1 cut(s) 142
Ksp22I TGATCA 2 cut(s) 115, 436
Kzo9I GATC 3 cut(s) 115, 139, 436
LpnPI CCDG 5 cut(s) 96, 123, 156, 180, 276
LweI GCATC 1 cut(s) 173
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 117, 141, 438
MboI GATC 3 cut(s) 115, 139, 436
MboII GAAGA 1 cut(s) 409
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 495
MnlI CCTC 4 cut(s) 309, 355, 393, 398
MroI TCCGGA 1 cut(s) 142
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 111
Mva1269I GAATGC 1 cut(s) 294
MvaI CCWGG 1 cut(s) 111
NdeII GATC 3 cut(s) 115, 139, 436
NlaIII CATG 7 cut(s) 13, 85, 340, 349, 376, 480, 493
NlaIV GGNNCC 1 cut(s) 154
NspI RCATGY 2 cut(s) 376, 480
PagI TCATGA 1 cut(s) 489
PciI ACATGT 2 cut(s) 372, 476
PctI GAATGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
PscI ACATGT 2 cut(s) 372, 476
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 73
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
Sau3AI GATC 3 cut(s) 115, 139, 436
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 329
SchI GAGTC 1 cut(s) 495
ScrFI CCNGG 1 cut(s) 111
SduI GDGCHC 1 cut(s) 484
SetI ASST 4 cut(s) 115, 174, 193, 310
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 192
Sse9I AATT 1 cut(s) 283
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 67
TaiI ACGT 1 cut(s) 174
TasI AATT 1 cut(s) 283
TatI WGTACW 1 cut(s) 327
TspDTI ATGAA 1 cut(s) 98
TspGWI ACGGA 1 cut(s) 443
VneI GTGCAC 1 cut(s) 480
XapI RAATTY 1 cut(s) 283
XceI RCATGY 2 cut(s) 376, 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.