pycom02g00080

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
52649 .. 53527
879 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00080.3

Sequence Viewer

Length: 795 bp
ATGCAACTGCAACGGCAACCTTCAAAGGCAGACACAGAAACAAAAGAAGCAGCAGCTGGCACAACCAGTGCTAATACTACTACTAAGGTTGTGGCGGAGGAGCATGAGTACCCTGTGACAATGAGGCGACCTGTCAAAGACATGAAGATTGTCGGCTCTTGTAACGGCCTGGTGTGTTTGGTGCTTGCCTCGGAATATATGATGATTTATAATCCATCCATCAGGCAAGTTCATGTAGCCCCAAAGATGATGACAATCTCCGGTAAGGATTACTTCTATGGCTTCGGTTACGATTTGTGCAAGGATGATTATAAAATAGTAAGGGCCACTTCTTCAAGTAAGGCTGGCATTTTCGCCACCCAACTTGACATTTATTCTTTGAAGAACAATACGTGGAAAGCCAGAGCCGAAACCCTACCTTTTTACTTTCTGTTCAACGAGGTCGGAACTTTACTCAACGAGGCTCTCCACTGGGCAGTTCGCCGTGGAAAGACTACCGATCAAGCTACCGCATACGGTGATAATGAGAGGCCTTTCTCAATTGTTTCTTTCGATATAACAGAGGAGACGTACCGGCAAGTTCCCCTACCGGGTGACGGGGACAAAAAATTCTCGTTCTATGGTTTGGGGGTTTTAGGAGGGCGGCTGAGTATGCTCCACAGCCCTCATGGGTCTGATTATCAGGTGTGGTTAATGAATGAGTATGGGGTCAAGGCATCTTGGTCTATTTTCACTACCATTCCGCAGAAGATGGATTCTGAATACCTAGGGCTGATGTCACTTCTGAGAAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

265

Amino Acids

29.75

Weight (kDa)

7.67

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 210, 312
AciI CCGC 4 cut(s) 95, 510, 643, 743
AcsI RAATTY 1 cut(s) 608
AfaI GTAC 2 cut(s) 110, 572
AfiI CCNNNNNNNGG 2 cut(s) 590, 596
AgsI TTSAA 4 cut(s) 24, 336, 382, 436
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 2 cut(s) 56, 506
AluI AGCT 2 cut(s) 56, 506
Alw26I GTCTC 1 cut(s) 560
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 3 cut(s) 166, 324, 530
ApeKI GCWGC 2 cut(s) 50, 53
ApoI RAATTY 1 cut(s) 608
AspA2I CCTAGG 1 cut(s) 766
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 1 cut(s) 591
AsuHPI GGTGA 2 cut(s) 530, 605
AvrII CCTAGG 1 cut(s) 766
BbvI GCAGC 2 cut(s) 62, 65
BccI CCATC 3 cut(s) 223, 227, 745
BceAI ACGGC 3 cut(s) 29, 181, 468
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 1 cut(s) 591
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 2 cut(s) 767, 793
BisI GCNGC 3 cut(s) 51, 54, 644
BlnI CCTAGG 1 cut(s) 766
BlsI GCNGC 3 cut(s) 52, 55, 645
Bme1390I CCNGG 2 cut(s) 170, 591
BmgT120I GGNCC 1 cut(s) 324
BmrFI CCNGG 2 cut(s) 170, 591
BmrI ACTGGG 1 cut(s) 481
BmsI GCATC 1 cut(s) 725
BmuI ACTGGG 1 cut(s) 481
BpuMI CCSGG 1 cut(s) 591
BsaAI YACGTR 1 cut(s) 393
BsaBI GATNNNNATC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 189, 484, 766
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 92, 122
Bsc4I CCNNNNNNNGG 2 cut(s) 590, 596
Bse118I RCCGGY 1 cut(s) 573
Bse1I ACTGG 2 cut(s) 66, 476
Bse8I GATNNNNATC 1 cut(s) 254
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 189, 484, 766
BseGI GGATG 2 cut(s) 215, 310
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 590, 596
BseMII CTCAG 2 cut(s) 638, 776
BseNI ACTGG 2 cut(s) 66, 476
BseRI GAGGAG 2 cut(s) 113, 578
BseXI GCAGC 2 cut(s) 62, 65
BshFI GGCC 3 cut(s) 168, 326, 532
BsiSI CCGG 3 cut(s) 261, 574, 590
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 2 cut(s) 590, 596
BsmAI GTCTC 1 cut(s) 560
BsmBI CGTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 3 cut(s) 168, 326, 532
Bsp143I GATC 1 cut(s) 499
BspACI CCGC 4 cut(s) 95, 510, 643, 743
BspANI GGCC 3 cut(s) 168, 326, 532
BspCNI CTCAG 2 cut(s) 639, 777
BsrFI RCCGGY 1 cut(s) 573
BsrI ACTGG 2 cut(s) 66, 476
BssAI RCCGGY 1 cut(s) 573
BssECI CCNNGG 3 cut(s) 189, 484, 766
BssMI GATC 1 cut(s) 499
BssT1I CCWWGG 1 cut(s) 766
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 393
BstC8I GCNNGC 3 cut(s) 58, 186, 346
BstDEI CTNAG 3 cut(s) 84, 647, 785
BstDSI CCRYGG 1 cut(s) 484
BstF5I GGATG 2 cut(s) 215, 310
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 1 cut(s) 652
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 168, 589
BstV1I GCAGC 2 cut(s) 62, 65
BsuRI GGCC 3 cut(s) 168, 326, 532
BtgI CCRYGG 1 cut(s) 484
BtsCI GGATG 2 cut(s) 215, 310
BtsIMutI CAGTG 2 cut(s) 73, 469
Cac8I GCNNGC 3 cut(s) 58, 186, 346
CaiI CAGNNNCTG 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 324
Csp6I GTAC 2 cut(s) 109, 571
CspCI CAANNNNNGTGG 2 cut(s) 346, 381
CviAII CATG 4 cut(s) 104, 142, 233, 668
CviQI GTAC 2 cut(s) 109, 571
DdeI CTNAG 3 cut(s) 84, 647, 785
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
EciI GGCGGA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 766
Eco147I AGGCCT 1 cut(s) 532
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 766
ErhI CCWWGG 1 cut(s) 766
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 4 cut(s) 107, 145, 236, 671
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 313, 345
FaqI GGGAC 1 cut(s) 614
FatI CATG 4 cut(s) 103, 141, 232, 667
Fnu4HI GCNGC 3 cut(s) 51, 54, 644
FokI GGATG 2 cut(s) 202, 317
Fsp4HI GCNGC 3 cut(s) 51, 54, 644
FspBI CTAG 2 cut(s) 767, 793
GluI GCNGC 3 cut(s) 51, 54, 644
HaeIII GGCC 3 cut(s) 168, 326, 532
HapII CCGG 3 cut(s) 261, 574, 590
Hin1II CATG 4 cut(s) 107, 145, 236, 671
HinfI GANTC 1 cut(s) 755
HpaII CCGG 3 cut(s) 261, 574, 590
HphI GGTGA 2 cut(s) 530, 605
Hpy188I TCNGA 5 cut(s) 193, 446, 676, 760, 786
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 2 cut(s) 392, 569
HpyCH4V TGCA 3 cut(s) 4, 10, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 652
HpyF3I CTNAG 3 cut(s) 84, 647, 785
HpySE526I ACGT 2 cut(s) 392, 569
Hsp92II CATG 4 cut(s) 107, 145, 236, 671
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 2 cut(s) 100, 660
Lsp1109I GCAGC 2 cut(s) 62, 65
LweI GCATC 1 cut(s) 725
MaeI CTAG 2 cut(s) 767, 793
MaeII ACGT 2 cut(s) 392, 569
MaeIII GTNAC 5 cut(s) 115, 161, 287, 593, 777
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 4 cut(s) 157, 324, 394, 760
MfeI CAATTG 1 cut(s) 540
MluCI AATT 2 cut(s) 540, 608
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 9 cut(s) 91, 117, 199, 433, 454, 522, 556, 632, 675
MseI TTAA 1 cut(s) 692
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 3 cut(s) 261, 574, 590
MspR9I CCNGG 2 cut(s) 170, 591
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 652
NciI CCSGG 1 cut(s) 591
NdeII GATC 1 cut(s) 499
NlaIII CATG 4 cut(s) 107, 145, 236, 671
NmuCI GTSAC 3 cut(s) 115, 593, 777
PceI AGGCCT 1 cut(s) 532
PfeI GAWTC 1 cut(s) 755
PkrI GCNGC 3 cut(s) 52, 55, 645
Ppu21I YACGTR 1 cut(s) 393
PsiI TTATAA 2 cut(s) 210, 312
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 56
RsaI GTAC 2 cut(s) 110, 572
RsaNI GTAC 2 cut(s) 109, 571
SaqAI TTAA 1 cut(s) 692
SatI GCNGC 3 cut(s) 51, 54, 644
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 1 cut(s) 324
ScrFI CCNGG 2 cut(s) 170, 591
SfaNI GCATC 1 cut(s) 725
Sse9I AATT 2 cut(s) 540, 608
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 4 cut(s) 95, 510, 643, 743
SspMI CTAG 2 cut(s) 767, 793
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 2 cut(s) 168, 589
StyI CCWWGG 1 cut(s) 766
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 2 cut(s) 395, 572
TaqI TCGA 1 cut(s) 552
TasI AATT 2 cut(s) 540, 608
TauI GCSGC 1 cut(s) 646
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 1 cut(s) 692
Tru9I TTAA 1 cut(s) 692
TscAI CASTG 2 cut(s) 73, 476
TseFI GTSAC 3 cut(s) 115, 593, 777
TseI GCWGC 2 cut(s) 50, 53
Tsp45I GTSAC 3 cut(s) 115, 593, 777
TspDTI ATGAA 3 cut(s) 158, 221, 710
TspRI CASTG 2 cut(s) 73, 476
XapI RAATTY 1 cut(s) 608
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XmaJI CCTAGG 1 cut(s) 766
XspI CTAG 2 cut(s) 767, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.