MD09G1129200.v1.1

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
9979777 .. 9980262
486 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1129200.v1.1.491

Sequence Viewer

Length: 486 bp
ATGCCGGCAGCAGCAACTGCTTCTACGGCCTCTTATACCGATGAGTACGATGATGACATTGTTATTGAGATACTGTCAAGGCTTCCAGTCAAATCTCTAATAAGATTCCGCTGTGTGTGCAAGTCATGGTGGGCTTTAATCTCCGATTATTATTTTGTTATGAAGCATTGTACCCGCGCTGTCATGGAATCCAACTGCGCGCATAACAGATTCAGACTTCTTTCTTCAGTCAGACCTCCGGAATCCATAGACTACAAAGAACTATTATTATTGGACACGAAGGATTATGACGATGGTAGTTGTGTTGCAAGCACAGAGCTTCGTTTACCAAAACGGCTGAATGGCACAACAGTTGTGGGTTCTTACAACGGCTTGATATGTTTACATCAACAGACCTACGACTGCTTGTTCTTATGCAACCCTAGCACCGGAGTCGTCAACAGGTTACCACTATTACCAACTGTTGTGCGGAAGTGTCAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

162

Amino Acids

18.23

Weight (kDa)

7.51

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 49 1.1e-08 F-box domain
F-box-like PF12937 18 - 53 8.9e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 177, 200
AccIII TCCGGA 1 cut(s) 238
AciI CCGC 3 cut(s) 109, 175, 469
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 2 cut(s) 47, 172
AfiI CCNNNNNNNGG 1 cut(s) 428
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 17
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 2 cut(s) 8, 11
AspLEI GCGC 3 cut(s) 179, 200, 202
BbvI GCAGC 2 cut(s) 20, 23
BccI CCATC 1 cut(s) 287
BceAI ACGGC 3 cut(s) 42, 350, 385
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BfaI CTAG 1 cut(s) 423
BisI GCNGC 2 cut(s) 9, 12
BlsI GCNGC 2 cut(s) 10, 13
BsaWI WCCGGW 2 cut(s) 238, 428
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 86
BsePI GCGCGC 1 cut(s) 198
BseXI GCAGC 2 cut(s) 20, 23
Bsh1236I CGCG 2 cut(s) 177, 200
BshFI GGCC 1 cut(s) 29
BsiSI CCGG 3 cut(s) 5, 239, 429
BslI CCNNNNNNNGG 1 cut(s) 428
BsnI GGCC 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 238
BspACI CCGC 3 cut(s) 109, 175, 469
BspANI GGCC 1 cut(s) 29
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 2 cut(s) 177, 200
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 4
BssHII GCGCGC 1 cut(s) 198
Bst4CI ACNGT 3 cut(s) 75, 352, 463
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 3 cut(s) 6, 200, 310
BstEII GGTNACC 1 cut(s) 444
BstFNI CGCG 2 cut(s) 177, 200
BstHHI GCGC 3 cut(s) 179, 200, 202
BstMWI GCNNNNNNNGC 4 cut(s) 17, 26, 117, 423
BstPI GGTNACC 1 cut(s) 444
BstUI CGCG 2 cut(s) 177, 200
BstV1I GCAGC 2 cut(s) 20, 23
BsuRI GGCC 1 cut(s) 29
Cac8I GCNNGC 3 cut(s) 6, 200, 310
CaiI CAGNNNCTG 1 cut(s) 17
CfoI GCGC 3 cut(s) 179, 200, 202
Cfr10I RCCGGY 1 cut(s) 4
Csp6I GTAC 2 cut(s) 46, 171
CspCI CAANNNNNGTGG 2 cut(s) 336, 371
CviAII CATG 2 cut(s) 126, 184
CviJI RGCY 6 cut(s) 29, 82, 134, 319, 337, 372
CviKI_1 RGCY 6 cut(s) 29, 82, 134, 319, 337, 372
CviQI GTAC 2 cut(s) 46, 171
Eco57I CTGAAG 1 cut(s) 210
Eco91I GGTNACC 1 cut(s) 444
EcoO65I GGTNACC 1 cut(s) 444
FaeI CATG 2 cut(s) 129, 187
FatI CATG 2 cut(s) 125, 183
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 9, 12
Fsp4HI GCNGC 2 cut(s) 9, 12
FspBI CTAG 1 cut(s) 423
GlaI GCGC 3 cut(s) 178, 199, 201
GluI GCNGC 2 cut(s) 9, 12
HaeIII GGCC 1 cut(s) 29
HapII CCGG 3 cut(s) 5, 239, 429
HhaI GCGC 3 cut(s) 179, 200, 202
Hin1II CATG 2 cut(s) 129, 187
Hin6I GCGC 3 cut(s) 177, 198, 200
HinP1I GCGC 3 cut(s) 177, 198, 200
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 5 cut(s) 105, 188, 210, 242, 432
HpaII CCGG 3 cut(s) 5, 239, 429
Hpy166II GTNNAC 3 cut(s) 326, 383, 439
Hpy188I TCNGA 3 cut(s) 145, 215, 233
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 326, 383, 439
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 3 cut(s) 75, 352, 463
HpyCH4V TGCA 3 cut(s) 120, 308, 417
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 26, 117, 423
Hsp92II CATG 2 cut(s) 129, 187
HspAI GCGC 3 cut(s) 177, 198, 200
Kpn2I TCCGGA 1 cut(s) 238
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
LpnPI CCDG 5 cut(s) 18, 99, 252, 427, 442
Lsp1109I GCAGC 2 cut(s) 20, 23
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 444
MboII GAAGA 1 cut(s) 216
MlyI GAGTC 1 cut(s) 441
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 2 cut(s) 40, 246
MroI TCCGGA 1 cut(s) 238
MroNI GCCGGC 1 cut(s) 4
MseI TTAA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 3 cut(s) 5, 239, 429
MvnI CGCG 2 cut(s) 177, 200
MwoI GCNNNNNNNGC 4 cut(s) 17, 26, 117, 423
NaeI GCCGGC 1 cut(s) 6
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 129, 187
PauI GCGCGC 1 cut(s) 198
PdiI GCCGGC 1 cut(s) 6
PfeI GAWTC 4 cut(s) 105, 188, 210, 242
PkrI GCNGC 2 cut(s) 10, 13
PleI GAGTC 1 cut(s) 440
PpsI GAGTC 1 cut(s) 440
PspEI GGTNACC 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 17
PteI GCGCGC 1 cut(s) 198
RsaI GTAC 2 cut(s) 47, 172
RsaNI GTAC 2 cut(s) 46, 171
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 2 cut(s) 9, 12
SchI GAGTC 1 cut(s) 441
SetI ASST 4 cut(s) 238, 321, 398, 446
SsiI CCGC 3 cut(s) 109, 175, 469
SspMI CTAG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 75, 352, 463
TfiI GAWTC 4 cut(s) 105, 188, 210, 242
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseI GCWGC 2 cut(s) 8, 11
TspDTI ATGAA 1 cut(s) 176
XspI CTAG 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.