RLG00000020791

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000113
Physical Location & Seq
Reverse (-)
68727559 .. 68728359
801 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020791

Sequence Viewer

Length: 609 bp
ATGGCGGACGGTCAGCAGCAACTCGTTCTCTCCGAATCCCATGACTTGAATGCTATCATCGTTGAGATCCTCTTTTCCAATGAGGAAGATGATGGCCCAGTTGCAAGCAGAGAGGTTGACTATCCGGTAATGGTAAATCCTAGGCATTTCTATTCGAAATGTTTCGTTGGTTCCTGCAATGGCCTGGTATGTTTGTTATTGGATTGCAATGTTGTGTTATGGAACCCTTGCACTAGAGTGATCCGGTCATTGCCAAGTCCTACTCGTTTCAATAGGAGTTGTGTGTTTTATGGGTTCGGTTATGATTCCGCCACAGATGATTGCAAGATAGTAGTGGGAAGTTATAGGCCTCTTGCTGGAAGTGGTCACGGCTACCACTTGCAGCACGGGGAAGGTTTTGAGGAAACCATGATTGAGGTCTTTGCACTGAAAACTGGTTCTTGGAGGACCCTTGAGAGGCTTATCCCATTTAAAATTGTTGGTAGTAGTGGTCACGGCTACATTTGTTTGATATGCCACATGTTGGTAGTTATCCTGAAGACCTGCAGAATTTCAGCTCAAGTGGCTTGGTTTAGAGCCATTACTTCTGATTTGAAAAGTGTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

6.14

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 37 - 156 9.3e-10 F-box associated beta propeller domain
FBA_1 PF07734 56 - 153 1.7e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 551
AccB7I CCANNNNNTGG 1 cut(s) 523
AciI CCGC 2 cut(s) 5, 309
AclWI GGATC 2 cut(s) 61, 235
AcsI RAATTY 1 cut(s) 549
AcuI CTGAAG 1 cut(s) 557
AfiI CCNNNNNNNGG 3 cut(s) 356, 456, 523
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 3 cut(s) 49, 271, 595
AjnI CCWGG 1 cut(s) 183
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 1 cut(s) 557
AluI AGCT 1 cut(s) 557
AlwI GGATC 2 cut(s) 61, 235
AoxI GGCC 3 cut(s) 94, 181, 347
ApeKI GCWGC 2 cut(s) 16, 382
ApoI RAATTY 1 cut(s) 549
Asp700I GAANNNNTTC 1 cut(s) 161
AspA2I CCTAGG 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 95, 447
AsuII TTCGAA 1 cut(s) 155
AvaII GGWCC 1 cut(s) 447
AvrII CCTAGG 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 28, 394
BccI CCATC 1 cut(s) 86
BceAI ACGGC 2 cut(s) 385, 511
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 2 cut(s) 141, 234
BfmI CTRYAG 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 551
BisI GCNGC 2 cut(s) 17, 383
BlnI CCTAGG 1 cut(s) 140
BlsI GCNGC 2 cut(s) 18, 384
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 447
BmgT120I GGNCC 2 cut(s) 95, 447
BmiI GGNNCC 3 cut(s) 172, 224, 449
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 92
BmuI ACTGGG 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 155
BpuEI CTTGAG 2 cut(s) 473, 543
BsaJI CCNNGG 1 cut(s) 140
BsaWI WCCGGW 2 cut(s) 124, 243
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 456, 523
Bse1I ACTGG 2 cut(s) 98, 439
Bse3DI GCAATG 3 cut(s) 184, 214, 248
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 140
BseLI CCNNNNNNNGG 3 cut(s) 356, 456, 523
BseMI GCAATG 3 cut(s) 184, 214, 248
BseNI ACTGG 2 cut(s) 98, 439
BseXI GCAGC 2 cut(s) 28, 394
BshFI GGCC 3 cut(s) 96, 183, 349
BsiSI CCGG 2 cut(s) 125, 244
BslI CCNNNNNNNGG 3 cut(s) 356, 456, 523
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 3 cut(s) 96, 183, 349
Bsp119I TTCGAA 1 cut(s) 155
Bsp143I GATC 2 cut(s) 66, 240
BspACI CCGC 2 cut(s) 5, 309
BspANI GGCC 3 cut(s) 96, 183, 349
BspLI GGNNCC 3 cut(s) 172, 224, 449
BspMAI CTGCAG 1 cut(s) 548
BspMI ACCTGC 1 cut(s) 551
BspPI GGATC 2 cut(s) 61, 235
BspT104I TTCGAA 1 cut(s) 155
BsrDI GCAATG 3 cut(s) 184, 214, 248
BsrI ACTGG 2 cut(s) 98, 439
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 2 cut(s) 66, 240
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 11
BstBI TTCGAA 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 106
BstKTI GATC 2 cut(s) 69, 243
BstMBI GATC 2 cut(s) 66, 240
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 28, 394
BstV2I GAAGAC 1 cut(s) 545
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BsuRI GGCC 3 cut(s) 96, 183, 349
BtsIMutI CAGTG 1 cut(s) 425
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 95, 447
CviAII CATG 3 cut(s) 41, 409, 520
CviJI RGCY 9 cut(s) 96, 183, 349, 372, 460, 498, 557, 566, 578
CviKI_1 RGCY 9 cut(s) 96, 183, 349, 372, 460, 498, 557, 566, 578
DpnI GATC 2 cut(s) 68, 242
DpnII GATC 2 cut(s) 66, 240
DraI TTTAAA 1 cut(s) 472
EciI GGCGGA 2 cut(s) 20, 298
Eco130I CCWWGG 1 cut(s) 140
Eco147I AGGCCT 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 557
EcoO109I RGGNCCY 1 cut(s) 447
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 3 cut(s) 44, 412, 523
FaiI YATR 9 cut(s) 42, 190, 220, 291, 303, 345, 410, 514, 521
FatI CATG 3 cut(s) 40, 408, 519
Fnu4HI GCNGC 2 cut(s) 17, 383
Fsp4HI GCNGC 2 cut(s) 17, 383
FspBI CTAG 2 cut(s) 141, 234
GluI GCNGC 2 cut(s) 17, 383
HaeIII GGCC 3 cut(s) 96, 183, 349
HapII CCGG 2 cut(s) 125, 244
Hin1II CATG 3 cut(s) 44, 412, 523
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 35, 305
HpaII CCGG 2 cut(s) 125, 244
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 34, 589
Hpy188III TCNNGA 1 cut(s) 535
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 1 cut(s) 11
HpyCH4V TGCA 8 cut(s) 104, 177, 207, 231, 324, 382, 425, 546
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
Hsp92II CATG 3 cut(s) 44, 412, 523
Kzo9I GATC 2 cut(s) 66, 240
Lsp1109I GCAGC 2 cut(s) 28, 394
MaeI CTAG 2 cut(s) 141, 234
MaeIII GTNAC 2 cut(s) 365, 491
MalI GATC 2 cut(s) 68, 242
MboI GATC 2 cut(s) 66, 240
MboII GAAGA 2 cut(s) 98, 550
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 474, 549
MnlI CCTC 8 cut(s) 76, 80, 106, 360, 394, 409, 438, 450
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 2 cut(s) 125, 244
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 55
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 563
NdeII GATC 2 cut(s) 66, 240
NlaIII CATG 3 cut(s) 44, 412, 523
NlaIV GGNNCC 3 cut(s) 172, 224, 449
NmuCI GTSAC 2 cut(s) 365, 491
NspI RCATGY 1 cut(s) 523
NspV TTCGAA 1 cut(s) 155
OliI CACNNNNGTG 1 cut(s) 236
PceI AGGCCT 1 cut(s) 349
PciI ACATGT 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 161
PfeI GAWTC 2 cut(s) 35, 305
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 2 cut(s) 18, 384
PpuMI RGGWCCY 1 cut(s) 447
PscI ACATGT 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 3 cut(s) 172, 224, 449
PspPI GGNCC 2 cut(s) 95, 447
PspPPI RGGWCCY 1 cut(s) 447
PstI CTGCAG 1 cut(s) 548
PsuI RGATCY 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 2 cut(s) 17, 383
Sau3AI GATC 2 cut(s) 66, 240
Sau96I GGNCC 2 cut(s) 95, 447
ScrFI CCNGG 1 cut(s) 185
SetI ASST 5 cut(s) 117, 397, 420, 545, 559
SfcI CTRYAG 1 cut(s) 544
SfuI TTCGAA 1 cut(s) 155
SinI GGWCC 1 cut(s) 447
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 2 cut(s) 452, 558
SmoI CTYRAG 2 cut(s) 452, 558
Sse9I AATT 2 cut(s) 474, 549
SseBI AGGCCT 1 cut(s) 349
SsiI CCGC 2 cut(s) 5, 309
SspMI CTAG 2 cut(s) 141, 234
StuI AGGCCT 1 cut(s) 349
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 140
TaaI ACNGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 155
TasI AATT 2 cut(s) 474, 549
TfiI GAWTC 2 cut(s) 35, 305
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 2 cut(s) 365, 491
TseI GCWGC 2 cut(s) 16, 382
Tsp45I GTSAC 2 cut(s) 365, 491
TspRI CASTG 1 cut(s) 432
Van91I CCANNNNNTGG 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 447
XapI RAATTY 1 cut(s) 549
XceI RCATGY 1 cut(s) 523
XmaJI CCTAGG 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 161
XspI CTAG 2 cut(s) 141, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.