RchiOBHm_Chr2g0154621

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000113
Physical Location & Seq
Reverse (-)
71722009 .. 71724416
2408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52360

Sequence Viewer

Length: 579 bp
ATGTCGGACGCTCTCTGCACTCGGCTGCAGCAACAACTGGTTCTCTCCGGTACCGGACCCAGCTCCGAGTCTCTTGATTTCGACGCCGTCATCGTCGAGATCCTCTCATGGCTGCCTGCCAAATCTCTGCTCCGATTCCGGTGCGTATGCAAAGCATGGCGGGCCTTGATCTCCGATCCTTATTTCATCAGAAAACACCTCAGCCGCATCAACACCAAAATCAATAGCAGCTACTCTCTCCTTTTTATGGATAAGGAGAACTCCAGTTCCCGATCCATAGACTGTGAAGCATTATTCAAGTGTTCAAGCCATGTTGATGGTCCCGTTCCGAGCAGAGAGCTTGATTTTCCGGTAAGTACTGTTCATGGACTCTTAATTGTCACATATGTTGGTAGGCAAGTAGTTGTTACTATGGAAGTACAACAGCAAAGAAGCACATTGAAGCTAAAGGTGAAACAAACTAAGCGAGAGCATGCAGGAGCTCCATCCTACAACAATACAAGAAGTAAAGAGGAAGACGGGCATGCAACCCAGTGCTCTGTAAGGTTACAAAAGCTGTGCAATCCGCAGCTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

192

Amino Acids

21.54

Weight (kDa)

9.14

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 30 - 64 1.3e-10 F-box domain
F-box-like PF12937 30 - 65 2.4e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 50
AccB1I GGYRCC 1 cut(s) 50
AciI CCGC 3 cut(s) 160, 205, 566
AclWI GGATC 3 cut(s) 94, 170, 267
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 52, 358, 420
AfiI CCNNNNNNNGG 2 cut(s) 247, 572
AgsI TTSAA 3 cut(s) 298, 306, 442
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 7 cut(s) 63, 231, 340, 445, 482, 556, 571
AluI AGCT 7 cut(s) 63, 231, 340, 445, 482, 556, 571
Alw21I GWGCWC 2 cut(s) 484, 539
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 3 cut(s) 94, 170, 267
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 5 cut(s) 25, 28, 112, 228, 568
Asp718I GGTACC 1 cut(s) 50
AspS9I GGNCC 3 cut(s) 56, 162, 320
AsuHPI GGTGA 1 cut(s) 463
AvaII GGWCC 2 cut(s) 56, 320
BanI GGYRCC 1 cut(s) 50
BanII GRGCYC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 522
Bbv12I GWGCWC 2 cut(s) 484, 539
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 4 cut(s) 12, 40, 99, 240
BccI CCATC 2 cut(s) 311, 493
BceAI ACGGC 1 cut(s) 71
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BcoDI GTCTC 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 26
BisI GCNGC 6 cut(s) 26, 29, 113, 205, 229, 569
BlsI GCNGC 6 cut(s) 27, 30, 114, 206, 230, 570
BmcAI AGTACT 1 cut(s) 358
Bme18I GGWCC 2 cut(s) 56, 320
BmgT120I GGNCC 3 cut(s) 56, 162, 320
BmiI GGNNCC 3 cut(s) 52, 58, 322
BmrI ACTGGG 1 cut(s) 526
BmsI GCATC 1 cut(s) 216
BmuI ACTGGG 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 522
BplI GAGNNNNNCTC 2 cut(s) 89, 121
BpmI CTGGAG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 84
BsaWI WCCGGW 4 cut(s) 47, 53, 138, 349
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 572
Bse1I ACTGG 3 cut(s) 42, 264, 532
BseGI GGATG 1 cut(s) 485
BseLI CCNNNNNNNGG 2 cut(s) 247, 572
BseMII CTCAG 1 cut(s) 214
BseNI ACTGG 3 cut(s) 42, 264, 532
BseXI GCAGC 4 cut(s) 12, 40, 99, 240
BseYI CCCAGC 1 cut(s) 59
BshFI GGCC 1 cut(s) 164
BshNI GGYRCC 1 cut(s) 50
BsiHKAI GWGCWC 2 cut(s) 484, 539
BsiSI CCGG 4 cut(s) 48, 54, 139, 350
BslFI GGGAC 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 247, 572
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 484, 539
Bsp143I GATC 4 cut(s) 99, 168, 175, 272
BspACI CCGC 3 cut(s) 160, 205, 566
BspANI GGCC 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 213
BspLI GGNNCC 3 cut(s) 52, 58, 322
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 3 cut(s) 94, 170, 267
BspT107I GGYRCC 1 cut(s) 50
BsrI ACTGG 3 cut(s) 42, 264, 532
BssMI GATC 4 cut(s) 99, 168, 175, 272
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 2 cut(s) 284, 361
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 4 cut(s) 117, 162, 474, 525
BstDEI CTNAG 2 cut(s) 200, 462
BstF5I GGATG 1 cut(s) 485
BstKTI GATC 4 cut(s) 102, 171, 178, 275
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 4 cut(s) 99, 168, 175, 272
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 476, 527
BstSFI CTRYAG 1 cut(s) 26
BstV1I GCAGC 4 cut(s) 12, 40, 99, 240
BstV2I GAAGAC 1 cut(s) 522
BstX2I RGATCY 1 cut(s) 99
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 1 cut(s) 99
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 485
BtsIMutI CAGTG 1 cut(s) 539
Cac8I GCNNGC 4 cut(s) 117, 162, 474, 525
Cfr13I GGNCC 3 cut(s) 56, 162, 320
CseI GACGC 2 cut(s) 17, 92
Csp6I GTAC 3 cut(s) 51, 357, 419
CviAII CATG 6 cut(s) 108, 156, 311, 365, 473, 524
CviQI GTAC 3 cut(s) 51, 357, 419
DdeI CTNAG 2 cut(s) 200, 462
DpnI GATC 4 cut(s) 101, 170, 177, 274
DpnII GATC 4 cut(s) 99, 168, 175, 272
Ecl136II GAGCTC 1 cut(s) 482
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 2 cut(s) 56, 320
Eco53kI GAGCTC 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 482
EcoT38I GRGCYC 1 cut(s) 484
FaeI CATG 6 cut(s) 111, 159, 314, 368, 476, 527
FaqI GGGAC 1 cut(s) 306
FatI CATG 6 cut(s) 107, 155, 310, 364, 472, 523
FauI CCCGC 1 cut(s) 153
FauNDI CATATG 1 cut(s) 385
Fnu4HI GCNGC 6 cut(s) 26, 29, 113, 205, 229, 569
FokI GGATG 1 cut(s) 472
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 6 cut(s) 26, 29, 113, 205, 229, 569
GluI GCNGC 6 cut(s) 26, 29, 113, 205, 229, 569
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 164
HapII CCGG 4 cut(s) 48, 54, 139, 350
HgaI GACGC 2 cut(s) 17, 92
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 6 cut(s) 111, 159, 314, 368, 476, 527
HinfI GANTC 3 cut(s) 68, 135, 369
HpaII CCGG 4 cut(s) 48, 54, 139, 350
HphI GGTGA 1 cut(s) 463
Hpy188I TCNGA 6 cut(s) 7, 67, 134, 175, 191, 330
Hpy188III TCNNGA 3 cut(s) 74, 97, 270
Hpy99I CGWCG 2 cut(s) 86, 98
HpyCH4III ACNGT 2 cut(s) 284, 361
HpyCH4V TGCA 6 cut(s) 18, 28, 150, 476, 527, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 200, 462
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 6 cut(s) 111, 159, 314, 368, 476, 527
KpnI GGTACC 1 cut(s) 54
Kzo9I GATC 4 cut(s) 99, 168, 175, 272
LmnI GCTCC 4 cut(s) 68, 135, 479, 487
Lsp1109I GCAGC 4 cut(s) 12, 40, 99, 240
LweI GCATC 1 cut(s) 216
MaeIII GTNAC 3 cut(s) 379, 406, 546
MalI GATC 4 cut(s) 101, 170, 177, 274
MboI GATC 4 cut(s) 99, 168, 175, 272
MboII GAAGA 1 cut(s) 527
MflI RGATCY 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 484, 539
MluCI AATT 1 cut(s) 375
MlyI GAGTC 2 cut(s) 77, 363
MnlI CCTC 3 cut(s) 113, 209, 505
MseI TTAA 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 4 cut(s) 48, 54, 139, 350
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeI CATATG 1 cut(s) 385
NdeII GATC 4 cut(s) 99, 168, 175, 272
NlaIII CATG 6 cut(s) 111, 159, 314, 368, 476, 527
NlaIV GGNNCC 3 cut(s) 52, 58, 322
NmuCI GTSAC 1 cut(s) 379
NspI RCATGY 2 cut(s) 476, 527
PaeI GCATGC 2 cut(s) 476, 527
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PfeI GAWTC 1 cut(s) 135
PflFI GACNNNGTC 1 cut(s) 86
PkrI GCNGC 6 cut(s) 27, 30, 114, 206, 230, 570
PleI GAGTC 2 cut(s) 76, 363
PpsI GAGTC 2 cut(s) 76, 363
Psp124BI GAGCTC 1 cut(s) 484
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 52, 58, 322
PspPI GGNCC 3 cut(s) 56, 162, 320
PsrI GAACNNNNNNTAC 2 cut(s) 345, 377
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 99
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 3 cut(s) 52, 358, 420
RsaNI GTAC 3 cut(s) 51, 357, 419
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 1 cut(s) 374
SatI GCNGC 6 cut(s) 26, 29, 113, 205, 229, 569
Sau3AI GATC 4 cut(s) 99, 168, 175, 272
Sau96I GGNCC 3 cut(s) 56, 162, 320
ScaI AGTACT 1 cut(s) 358
SchI GAGTC 2 cut(s) 77, 363
SduI GDGCHC 2 cut(s) 484, 539
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 26
SinI GGWCC 2 cut(s) 56, 320
SmiMI CAYNNNNRTG 1 cut(s) 315
SphI GCATGC 2 cut(s) 476, 527
Sse9I AATT 1 cut(s) 375
SsiI CCGC 3 cut(s) 160, 205, 566
SstI GAGCTC 1 cut(s) 484
TaaI ACNGT 2 cut(s) 284, 361
TaqI TCGA 2 cut(s) 81, 96
TasI AATT 1 cut(s) 375
TatI WGTACW 2 cut(s) 356, 418
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 135
Tru1I TTAA 1 cut(s) 374
Tru9I TTAA 1 cut(s) 374
TscAI CASTG 1 cut(s) 539
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 5 cut(s) 25, 28, 112, 228, 568
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 175, 353
TspRI CASTG 1 cut(s) 539
Tth111I GACNNNGTC 1 cut(s) 86
VpaK11BI GGWCC 2 cut(s) 56, 320
XceI RCATGY 2 cut(s) 476, 527
ZrmI AGTACT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.