Rroxscaffold_4G00307970

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000113
Physical Location & Seq
Forward (+)
29492337 .. 29496774
4438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307970.1

Sequence Viewer

Length: 1872 bp
ATGGACCTTCCGCCGCAAGTACTAGGGGCGGATTTATCTTCTCGGCTTTCCCCATCCAAGCTTGCTTTGTTTTCCGATTTGCTCCAAACGGGAGATGCTGTTGGTTTTTATGCATATGGTTATCAAATTGATTTGGTTTATATGGAGCAGGGTGGTGAAACACTTTCGTGGCGGTGTAATCGATTTGTGCTTGGTAATGCAACCAATGCTTGTGTTTCGGATGATTATCTAGATGGGGAACCATTAGAGCAGATGCTCTTCATCACCCAAGGCACTGCATGGTCCTATACCACTATAAGTGAAACAAGTACTGGTTATCCAAACACCAAGTGCCTTGGGAAAGGCGATTTATACGGAGAAGAACTACTAAGTTGGGCATTGAAATCTACCCCATTTTCAGAGTTACCCATCTCTGCCAGAATAGTTAGGCCAGATCAGCTCCGTTACTTGGAGGGTTTTCAGTTGGAGCATGGAGAGCATTGGAAGCATTTGGCAGTATCTTCCATACAAGCAAATTGGAGCCACTATTGTGAACCGACTGAGAGAGCAGAACTGCTGCGACGAAAATCGAAGAAAGCTCTTACACACGCCACTGTCGAAACAACCACAACCGCAGCTCTGCTCAACGAAGTCGACCGCTCGAAAGATCCCTCCTCCACAACGCACCGCATCGGTCTTCCTCCAAATTCCATGGCGGACGGCGGCGGCGGCTTTCATAAGCGAGCTCTTACCAGTGTCACCGACCTCGACGGCGTCCTTGATGAAATACTCGCAAGGCTACCGGTCAAAACTTTGATGCGATTTCGCTGCGTTTGCAAGCCATGGCGTGCTCTCATCTCCCAGTCTCACTTTGTCACCAAGCACTTCAACTACGCAAGCAAAGGCTTCACCGAGAACACCTCCAGCCTCTTGATATCAATGAGTCCCTTCAAATCCCTGGACTCTGAAGCATCCAAGGATTTGTCCCTAGACTGTGAAGCATTGAAGGACTTGAAGGATGATGGGGATACTCATCTTGTAATTAGAAAGCTCGAGTTTCCGTTAATGTTCCCTAATTCCAGTCGTAGAAATATTGTGGGTTCTTGCAATGGGCTGATTTGTGTAGAAATTGACGAGAAAGACATGGTGTTATGGAACCCTTGTACTGGACAATGCAATTTGTTGCCAAAACCTACTTCGAAGCTTTGCGGAGTTGGTTATGATCTCACTATGAAGTTTTCCGGATTTGGTTATGATTCCACTAATGATGATTATAAGGTAGTGAGAGGATACAGTTTTAGAGTTGCGGGTTCTAAGGAAACCGTGGTTCAGGTCTTTAGTTTAAAATCGGGTTCATGGAGGACCCATGAGGGTCTTAGTTACTTGCGCTTGATAGGGCCAGGGTGCTTGTTAAATGGTGCTCTGCATTGGGCAGAGACCATATTCAATGATTTTCGTCCACCAGCTTTAAGGACTATCTCTTTTGATTTAGCGGAGGAAAAGTTTCAGGAGATGCTTCCGTTGCCCTCTCAGGCTGGTAATAGATACAGCTTTATTCCTGGAGATTGTTTTGGTGTATATACATATGACTATCTACACTATGAGATCTTCAGGTTTAGAATATGGATAATGAAGGAATCATGGACTGAAGTTGGTTCTTTAGATATTTTACGTGAAGATTCTGGATTCTCACTCGTGATACTTCTGTGCATATTAGAGAATGGTGAAGGTTTGATCGTCCAGACATGTGATTTTCAGTCCTTGGTATTATATAGCTTCAAGGAACAGACATTTAGGGATGTTGTTAGGACCCACAACAAATGGAAATTTAATGCAGTCATTTACAGGGAGACTTTAGTTTCACCAGTCACCAGTGGTATTGCAGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

623

Amino Acids

70.0

Weight (kDa)

5.7

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 252 - 284 1.7e-07 F-box domain
FBA_3 PF08268 345 - 594 2.5e-19 F-box associated beta propeller domain
FBA_1 PF07734 355 - 546 1.5e-23 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1254
AccBSI CCGCTC 1 cut(s) 639
AccI GTMKAC 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 1220
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 685, 1805
AcuI CTGAAG 3 cut(s) 966, 1573, 1647
AcyI GRCGYC 1 cut(s) 753
AdeI CACNNNGTG 1 cut(s) 330
AfaI GTAC 3 cut(s) 21, 310, 1144
AfiI CCNNNNNNNGG 2 cut(s) 448, 1145
AflIII ACRYGT 1 cut(s) 1724
AgeI ACCGGT 1 cut(s) 781
AgsI TTSAA 7 cut(s) 382, 868, 931, 985, 994, 1426, 1759
AjnI CCWGG 3 cut(s) 936, 1378, 1537
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AleI CACNNNNGTG 2 cut(s) 166, 528
Alw21I GWGCWC 3 cut(s) 727, 832, 1402
Alw26I GTCTC 3 cut(s) 849, 1409, 1823
AlwI GGATC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 1031
Aor13HI TCCGGA 1 cut(s) 1220
AoxI GGCC 2 cut(s) 428, 1376
ApeKI GCWGC 3 cut(s) 556, 614, 807
ApoI RAATTY 2 cut(s) 685, 1805
AsiGI ACCGGT 1 cut(s) 781
Asp700I GAANNNNTTC 1 cut(s) 1482
AspLEI GCGC 1 cut(s) 1368
AspS9I GGNCC 5 cut(s) 4, 282, 1341, 1376, 1788
AsuHPI GGTGA 8 cut(s) 167, 256, 730, 847, 880, 1715, 1833, 1840
AsuII TTCGAA 1 cut(s) 1178
AvaI CYCGRG 1 cut(s) 1031
AvaII GGWCC 4 cut(s) 4, 282, 1341, 1788
BaeI ACNNNNGTAYC 2 cut(s) 1670, 1703
BanII GRGCYC 1 cut(s) 727
BauI CACGAG 1 cut(s) 1673
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 3 cut(s) 727, 832, 1402
BbvI GCAGC 3 cut(s) 543, 626, 794
BccI CCATC 4 cut(s) 61, 227, 416, 995
BceAI ACGGC 2 cut(s) 715, 766
BcgI CGANNNNNNTGC 2 cut(s) 789, 823
BciT130I CCWGG 3 cut(s) 938, 1380, 1539
BciVI GTATCC 2 cut(s) 1000, 1262
BcoDI GTCTC 3 cut(s) 849, 1409, 1823
BfaI CTAG 3 cut(s) 23, 230, 968
BfuI GTATCC 2 cut(s) 1000, 1262
BglII AGATCT 1 cut(s) 1584
BisI GCNGC 7 cut(s) 14, 557, 615, 703, 706, 709, 808
BlsI GCNGC 7 cut(s) 15, 558, 616, 704, 707, 710, 809
BmcAI AGTACT 2 cut(s) 21, 310
Bme1390I CCNGG 3 cut(s) 938, 1380, 1539
Bme18I GGWCC 4 cut(s) 4, 282, 1341, 1788
BmeT110I CYCGRG 1 cut(s) 1031
BmgT120I GGNCC 5 cut(s) 4, 282, 1341, 1376, 1788
BmiI GGNNCC 5 cut(s) 240, 521, 1136, 1343, 1790
BmrFI CCNGG 3 cut(s) 938, 1380, 1539
BmrI ACTGGG 1 cut(s) 835
BmsI GCATC 6 cut(s) 85, 243, 678, 786, 959, 1482
BmuI ACTGGG 1 cut(s) 835
BpiI GAAGAC 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 884, 916
BpmI CTGGAG 2 cut(s) 886, 1560
Bpu14I TTCGAA 1 cut(s) 1178
Bsa29I ATCGAT 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 1652
BsaBI GATNNNNATC 2 cut(s) 225, 1011
BsaHI GRCGYC 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 1409
BsaJI CCNNGG 9 cut(s) 268, 334, 690, 821, 936, 954, 1302, 1379, 1740
BsaWI WCCGGW 2 cut(s) 781, 1220
BsaXI ACNNNNNCTCC 4 cut(s) 84, 114, 1466, 1496
Bsc4I CCNNNNNNNGG 2 cut(s) 448, 1145
Bse118I RCCGGY 1 cut(s) 781
Bse1I ACTGG 7 cut(s) 316, 732, 841, 1059, 1150, 1844, 1851
Bse3DI GCAATG 1 cut(s) 1093
Bse8I GATNNNNATC 2 cut(s) 225, 1011
BseAI TCCGGA 1 cut(s) 1220
BseBI CCWGG 3 cut(s) 938, 1380, 1539
BseCI ATCGAT 1 cut(s) 181
BseDI CCNNGG 9 cut(s) 268, 334, 690, 821, 936, 954, 1302, 1379, 1740
BseGI GGATG 5 cut(s) 53, 226, 950, 1003, 1783
BseJI GATNNNNATC 2 cut(s) 225, 1011
BseLI CCNNNNNNNGG 2 cut(s) 448, 1145
BseMI GCAATG 1 cut(s) 1093
BseMII CTCAG 2 cut(s) 531, 1523
BseNI ACTGG 7 cut(s) 316, 732, 841, 1059, 1150, 1844, 1851
BseRI GAGGAG 1 cut(s) 643
BseXI GCAGC 3 cut(s) 543, 626, 794
Bsh1285I CGRYCG 1 cut(s) 637
BshFI GGCC 2 cut(s) 430, 1378
BshTI ACCGGT 1 cut(s) 781
BshVI ATCGAT 1 cut(s) 181
BsiEI CGRYCG 1 cut(s) 637
BsiHKAI GWGCWC 3 cut(s) 727, 832, 1402
BsiHKCI CYCGRG 1 cut(s) 1031
BsiSI CCGG 2 cut(s) 782, 1221
BslFI GGGAC 2 cut(s) 909, 949
BslI CCNNNNNNNGG 2 cut(s) 448, 1145
BsmAI GTCTC 3 cut(s) 849, 1409, 1823
BsmFI GGGAC 2 cut(s) 909, 949
BsnI GGCC 2 cut(s) 430, 1378
Bso31I GGTCTC 1 cut(s) 1409
BsoBI CYCGRG 1 cut(s) 1031
Bsp119I TTCGAA 1 cut(s) 1178
Bsp1286I GDGCHC 3 cut(s) 727, 832, 1402
Bsp13I TCCGGA 1 cut(s) 1220
Bsp143I GATC 5 cut(s) 433, 646, 1201, 1584, 1713
Bsp19I CCATGG 2 cut(s) 690, 821
BspANI GGCC 2 cut(s) 430, 1378
BspCNI CTCAG 2 cut(s) 532, 1522
BspDI ATCGAT 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 1220
BspLI GGNNCC 5 cut(s) 240, 521, 1136, 1343, 1790
BspPI GGATC 1 cut(s) 641
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 1178
BspTNI GGTCTC 1 cut(s) 1409
BsrBI CCGCTC 1 cut(s) 639
BsrDI GCAATG 1 cut(s) 1093
BsrFI RCCGGY 1 cut(s) 781
BsrI ACTGG 7 cut(s) 316, 732, 841, 1059, 1150, 1844, 1851
BssAI RCCGGY 1 cut(s) 781
BssECI CCNNGG 9 cut(s) 268, 334, 690, 821, 936, 954, 1302, 1379, 1740
BssMI GATC 5 cut(s) 433, 646, 1201, 1584, 1713
BssNI GRCGYC 1 cut(s) 753
BssSI CACGAG 1 cut(s) 1673
BssT1I CCWWGG 6 cut(s) 268, 334, 690, 821, 954, 1740
Bst2BI CACGAG 1 cut(s) 1673
Bst2UI CCWGG 3 cut(s) 938, 1380, 1539
Bst4CI ACNGT 4 cut(s) 595, 974, 1274, 1303
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 1 cut(s) 753
BstAPI GCANNNNNTGC 1 cut(s) 206
BstBAI YACGTR 1 cut(s) 1652
BstBI TTCGAA 1 cut(s) 1178
BstC8I GCNNGC 5 cut(s) 63, 723, 818, 828, 877
BstDEI CTNAG 5 cut(s) 368, 540, 1293, 1355, 1509
BstDSI CCRYGG 3 cut(s) 690, 821, 1302
BstF5I GGATG 5 cut(s) 53, 226, 950, 1003, 1783
BstHHI GCGC 1 cut(s) 1368
BstKTI GATC 5 cut(s) 436, 649, 1204, 1587, 1716
BstMAI GTCTC 3 cut(s) 849, 1409, 1823
BstMBI GATC 5 cut(s) 433, 646, 1201, 1584, 1713
BstMCI CGRYCG 1 cut(s) 637
BstMWI GCNNNNNNNGC 7 cut(s) 206, 436, 475, 484, 708, 813, 1501
BstNI CCWGG 3 cut(s) 938, 1380, 1539
BstNSI RCATGY 1 cut(s) 1728
BstSCI CCNGG 3 cut(s) 936, 1378, 1537
BstV1I GCAGC 3 cut(s) 543, 626, 794
BstV2I GAAGAC 1 cut(s) 668
BstX2I RGATCY 2 cut(s) 646, 1584
BstYI RGATCY 2 cut(s) 646, 1584
Bsu15I ATCGAT 1 cut(s) 181
BsuI GTATCC 2 cut(s) 1000, 1262
BsuRI GGCC 2 cut(s) 430, 1378
BsuTUI ATCGAT 1 cut(s) 181
BtgI CCRYGG 3 cut(s) 690, 821, 1302
BtsCI GGATG 5 cut(s) 53, 226, 950, 1003, 1783
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 4 cut(s) 273, 591, 739, 1858
Cac8I GCNNGC 5 cut(s) 63, 723, 818, 828, 877
CfoI GCGC 1 cut(s) 1368
Cfr10I RCCGGY 1 cut(s) 781
Cfr13I GGNCC 5 cut(s) 4, 282, 1341, 1376, 1788
ClaI ATCGAT 1 cut(s) 181
CseI GACGC 1 cut(s) 742
Csp6I GTAC 3 cut(s) 20, 309, 1143
CspAI ACCGGT 1 cut(s) 781
CviAII CATG 9 cut(s) 279, 470, 691, 822, 1123, 1335, 1346, 1620, 1725
CviQI GTAC 3 cut(s) 20, 309, 1143
DdeI CTNAG 5 cut(s) 368, 540, 1293, 1355, 1509
DpnI GATC 5 cut(s) 435, 648, 1203, 1586, 1715
DpnII GATC 5 cut(s) 433, 646, 1201, 1584, 1713
DraI TTTAAA 1 cut(s) 1323
DraIII CACNNNGTG 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 2 cut(s) 44, 710
Ecl136II GAGCTC 1 cut(s) 725
Eco130I CCWWGG 6 cut(s) 268, 334, 690, 821, 954, 1740
Eco24I GRGCYC 1 cut(s) 727
Eco31I GGTCTC 1 cut(s) 1409
Eco32I GATATC 1 cut(s) 915
Eco47I GGWCC 4 cut(s) 4, 282, 1341, 1788
Eco53kI GAGCTC 1 cut(s) 725
Eco57I CTGAAG 3 cut(s) 966, 1573, 1647
Eco88I CYCGRG 1 cut(s) 1031
EcoICRI GAGCTC 1 cut(s) 725
EcoO109I RGGNCCY 2 cut(s) 1341, 1788
EcoRII CCWGG 3 cut(s) 936, 1378, 1537
EcoRV GATATC 1 cut(s) 915
EcoT14I CCWWGG 6 cut(s) 268, 334, 690, 821, 954, 1740
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 6 cut(s) 268, 334, 690, 821, 954, 1740
FaeI CATG 9 cut(s) 282, 473, 694, 825, 1126, 1338, 1349, 1623, 1728
FaqI GGGAC 2 cut(s) 909, 949
FatI CATG 9 cut(s) 278, 469, 690, 821, 1122, 1334, 1345, 1619, 1724
FauI CCCGC 1 cut(s) 1279
FauNDI CATATG 2 cut(s) 115, 1564
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 7 cut(s) 14, 557, 615, 703, 706, 709, 808
FokI GGATG 5 cut(s) 40, 233, 937, 1010, 1790
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 7 cut(s) 14, 557, 615, 703, 706, 709, 808
FspBI CTAG 3 cut(s) 23, 230, 968
GlaI GCGC 1 cut(s) 1367
GluI GCNGC 7 cut(s) 14, 557, 615, 703, 706, 709, 808
GsuI CTGGAG 2 cut(s) 886, 1560
HaeIII GGCC 2 cut(s) 430, 1378
HapII CCGG 2 cut(s) 782, 1221
HgaI GACGC 1 cut(s) 742
HhaI GCGC 1 cut(s) 1368
Hin1I GRCGYC 1 cut(s) 753
Hin1II CATG 9 cut(s) 282, 473, 694, 825, 1126, 1338, 1349, 1623, 1728
Hin6I GCGC 1 cut(s) 1366
HinP1I GCGC 1 cut(s) 1366
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HindIII AAGCTT 2 cut(s) 59, 1181
HinfI GANTC 6 cut(s) 922, 941, 1235, 1616, 1658, 1665
HpaII CCGG 2 cut(s) 782, 1221
HphI GGTGA 8 cut(s) 167, 256, 730, 847, 880, 1715, 1833, 1840
Hpy166II GTNNAC 3 cut(s) 533, 634, 1439
Hpy188I TCNGA 4 cut(s) 76, 220, 400, 946
Hpy188III TCNNGA 7 cut(s) 230, 910, 1221, 1487, 1662, 1675, 1720
Hpy8I GTNNAC 3 cut(s) 533, 634, 1439
Hpy99I CGWCG 2 cut(s) 564, 752
HpyAV CCTTC 6 cut(s) 17, 937, 979, 988, 1606, 1700
HpyCH4III ACNGT 4 cut(s) 595, 974, 1274, 1303
HpyCH4IV ACGT 1 cut(s) 1651
HpyF10VI GCNNNNNNNGC 7 cut(s) 206, 436, 475, 484, 708, 813, 1501
HpyF3I CTNAG 5 cut(s) 368, 540, 1293, 1355, 1509
HpySE526I ACGT 1 cut(s) 1651
Hsp92I GRCGYC 1 cut(s) 753
Hsp92II CATG 9 cut(s) 282, 473, 694, 825, 1126, 1338, 1349, 1623, 1728
HspAI GCGC 1 cut(s) 1366
Kpn2I TCCGGA 1 cut(s) 1220
Kzo9I GATC 5 cut(s) 433, 646, 1201, 1584, 1713
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 5 cut(s) 87, 145, 444, 466, 519
Lsp1109I GCAGC 3 cut(s) 543, 626, 794
LweI GCATC 6 cut(s) 85, 243, 678, 786, 959, 1482
MaeI CTAG 3 cut(s) 23, 230, 968
MaeII ACGT 1 cut(s) 1651
MaeIII GTNAC 6 cut(s) 402, 443, 736, 853, 1358, 1846
MalI GATC 5 cut(s) 435, 648, 1203, 1586, 1715
MbiI CCGCTC 1 cut(s) 639
MboI GATC 5 cut(s) 433, 646, 1201, 1584, 1713
MboII GAAGA 8 cut(s) 30, 250, 371, 492, 583, 668, 1579, 1667
MflI RGATCY 2 cut(s) 646, 1584
MhlI GDGCHC 3 cut(s) 727, 832, 1402
MluCI AATT 8 cut(s) 126, 514, 685, 1020, 1054, 1107, 1156, 1805
MlyI GAGTC 2 cut(s) 931, 935
MmeI TCCRAC 1 cut(s) 444
Mph1103I ATGCAT 1 cut(s) 115
MroI TCCGGA 1 cut(s) 1220
MroXI GAANNNNTTC 1 cut(s) 1482
MseI TTAA 5 cut(s) 1043, 1322, 1391, 1448, 1809
MslI CAYNNNNRTG 2 cut(s) 166, 528
MspI CCGG 2 cut(s) 782, 1221
MspR9I CCNGG 3 cut(s) 938, 1380, 1539
MvaI CCWGG 3 cut(s) 938, 1380, 1539
MwoI GCNNNNNNNGC 7 cut(s) 206, 436, 475, 484, 708, 813, 1501
NcoI CCATGG 2 cut(s) 690, 821
NdeI CATATG 2 cut(s) 115, 1564
NdeII GATC 5 cut(s) 433, 646, 1201, 1584, 1713
NlaIII CATG 9 cut(s) 282, 473, 694, 825, 1126, 1338, 1349, 1623, 1728
NlaIV GGNNCC 5 cut(s) 240, 521, 1136, 1343, 1790
NmeAIII GCCGAG 1 cut(s) 22
NmuCI GTSAC 3 cut(s) 736, 853, 1846
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 1 cut(s) 1728
NspV TTCGAA 1 cut(s) 1178
OliI CACNNNNGTG 2 cut(s) 166, 528
PaeR7I CTCGAG 1 cut(s) 1031
PciI ACATGT 1 cut(s) 1724
PciSI GCTCTTC 1 cut(s) 263
PcsI WCGNNNNNNNCGW 1 cut(s) 594
PdmI GAANNNNTTC 1 cut(s) 1482
PfeI GAWTC 4 cut(s) 1235, 1616, 1658, 1665
PflFI GACNNNGTC 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 1537
PinAI ACCGGT 1 cut(s) 781
PkrI GCNGC 7 cut(s) 15, 558, 616, 704, 707, 710, 809
PleI GAGTC 2 cut(s) 930, 935
PpsI GAGTC 2 cut(s) 930, 935
Ppu21I YACGTR 1 cut(s) 1652
PpuMI RGGWCCY 2 cut(s) 1341, 1788
PscI ACATGT 1 cut(s) 1724
PsiI TTATAA 1 cut(s) 1254
Psp124BI GAGCTC 1 cut(s) 727
Psp5II RGGWCCY 2 cut(s) 1341, 1788
Psp6I CCWGG 3 cut(s) 936, 1378, 1537
PspGI CCWGG 3 cut(s) 936, 1378, 1537
PspN4I GGNNCC 5 cut(s) 240, 521, 1136, 1343, 1790
PspPI GGNCC 5 cut(s) 4, 282, 1341, 1376, 1788
PspPPI RGGWCCY 2 cut(s) 1341, 1788
PspXI VCTCGAGB 1 cut(s) 1031
PsuI RGATCY 2 cut(s) 646, 1584
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 3 cut(s) 21, 310, 1144
RsaNI GTAC 3 cut(s) 20, 309, 1143
RseI CAYNNNNRTG 2 cut(s) 166, 528
SacI GAGCTC 1 cut(s) 727
SalI GTCGAC 1 cut(s) 632
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 5 cut(s) 1043, 1322, 1391, 1448, 1809
SatI GCNGC 7 cut(s) 14, 557, 615, 703, 706, 709, 808
Sau3AI GATC 5 cut(s) 433, 646, 1201, 1584, 1713
Sau96I GGNCC 5 cut(s) 4, 282, 1341, 1376, 1788
ScaI AGTACT 2 cut(s) 21, 310
SchI GAGTC 2 cut(s) 931, 935
ScrFI CCNGG 3 cut(s) 938, 1380, 1539
SduI GDGCHC 3 cut(s) 727, 832, 1402
SfaNI GCATC 6 cut(s) 85, 243, 678, 786, 959, 1482
Sfr274I CTCGAG 1 cut(s) 1031
SfuI TTCGAA 1 cut(s) 1178
SinI GGWCC 4 cut(s) 4, 282, 1341, 1788
SlaI CTCGAG 1 cut(s) 1031
SmiMI CAYNNNNRTG 2 cut(s) 166, 528
SmlI CTYRAG 1 cut(s) 1031
SmoI CTYRAG 1 cut(s) 1031
Sse9I AATT 8 cut(s) 126, 514, 685, 1020, 1054, 1107, 1156, 1805
SspI AATATT 1 cut(s) 1072
SspMI CTAG 3 cut(s) 23, 230, 968
SstI GAGCTC 1 cut(s) 727
StyD4I CCNGG 3 cut(s) 936, 1378, 1537
StyI CCWWGG 6 cut(s) 268, 334, 690, 821, 954, 1740
TaaI ACNGT 4 cut(s) 595, 974, 1274, 1303
TaiI ACGT 1 cut(s) 1654
TaqI TCGA 8 cut(s) 181, 569, 597, 633, 641, 747, 1032, 1178
TaqII GACCGA 1 cut(s) 662
TasI AATT 8 cut(s) 126, 514, 685, 1020, 1054, 1107, 1156, 1805
TatI WGTACW 3 cut(s) 19, 308, 1142
TauI GCSGC 4 cut(s) 16, 705, 708, 711
TfiI GAWTC 4 cut(s) 1235, 1616, 1658, 1665
Tru1I TTAA 5 cut(s) 1043, 1322, 1391, 1448, 1809
Tru9I TTAA 5 cut(s) 1043, 1322, 1391, 1448, 1809
TscAI CASTG 4 cut(s) 280, 598, 739, 1858
TseFI GTSAC 3 cut(s) 736, 853, 1846
TseI GCWGC 3 cut(s) 556, 614, 807
Tsp45I GTSAC 3 cut(s) 736, 853, 1846
TspDTI ATGAA 6 cut(s) 250, 704, 777, 1226, 1323, 1625
TspGWI ACGGA 4 cut(s) 369, 431, 1029, 1488
TspRI CASTG 4 cut(s) 280, 598, 739, 1858
Tth111I GACNNNGTC 1 cut(s) 752
VpaK11BI GGWCC 4 cut(s) 4, 282, 1341, 1788
XapI RAATTY 2 cut(s) 685, 1805
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 1728
XhoI CTCGAG 1 cut(s) 1031
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 1482
XspI CTAG 3 cut(s) 23, 230, 968
ZrmI AGTACT 2 cut(s) 21, 310
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.