FvH4_6g39180

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000113
Physical Location & Seq
Reverse (-)
30991025 .. 30991717
693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39180.t1

Sequence Viewer

Length: 693 bp
ATGTTTTATGCTACAAGGCCATCGCCGTTAATTAACATGGCAGAGGGCCTAGTCCCTCAGCAGCAACTGGTTTCGTTGCGAAAACGACCTCGTCATTGCGACCACAGCAAGGAAGTTGACGATATCGTAGTTGAGATACTGTCAAGGCTTCCGGTCAAATCCTTGTTACGATTCCGAAGTGTATGCAAGTCATGGCGTGCTTTAATCTCAGATTCTTATTTTGTTAAGAAGCACCTCGGCCATGCATTCACAGACACATCCAACAGCTTCAGGCTTGTATTCTTGAATGCTCGTCCCAGAACCGTAGATCTCCAAGGATTGGAGGTTCATGATCATATTCGTCAGCAAGATTCTTTTGCAGAGGATATACTTGGCCGGTCTAGGATTCTTGGTTCTTGCAATGGCTTAATATGTTTGCAAGAGATGATGTTTGATGGTATATACCGTGATGATATTTTCATATGGCACCCTAGTACTAGAGCGACCAAGAAAGTTCCAAAACATAAGTTTACCAAGGGTTCAAGAAGGTTTTATGGATTCGGTTATGATGCCAACACTGAAGATTACAAGCTTATAGTGGGAGATAGCAATCACGTAGCTGAAGAAACCAAATTTGGTATATTTACACTGAAAACAGGTTCATGGAGGACTGTTGAAGACTTCCAGTTTGTTAATTTGGATGGACAAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

231

Amino Acids

26.53

Weight (kDa)

9.17

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 40 - 76 9.1e-11 F-box domain
F-box-like PF12937 40 - 74 6.1e-09 F-box-like
FBA_3 PF08268 118 - 219 3.4e-11 F-box associated beta propeller domain
FBA_1 PF07734 130 - 220 4.5e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 319
AcoI YGGCCR 2 cut(s) 238, 373
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 3 cut(s) 253, 579, 621
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 109, 319
AgsI TTSAA 3 cut(s) 286, 522, 656
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AloI GAACNNNNNNTCC 4 cut(s) 309, 341, 376, 408
AluBI AGCT 3 cut(s) 267, 571, 599
AluI AGCT 3 cut(s) 267, 571, 599
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 4 cut(s) 17, 46, 238, 373
ApeKI GCWGC 1 cut(s) 61
ApoI RAATTY 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 650, 682
AspS9I GGNCC 1 cut(s) 46
BanI GGYRCC 1 cut(s) 465
BbsI GAAGAC 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 73
BccI CCATC 3 cut(s) 28, 428, 674
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 165, 199
BclI TGATCA 1 cut(s) 331
BfaI CTAG 4 cut(s) 50, 381, 471, 477
BglII AGATCT 1 cut(s) 307
BisI GCNGC 1 cut(s) 62
BlsI GCNGC 1 cut(s) 63
BmcAI AGTACT 1 cut(s) 475
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 467
BmsI GCATC 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 3 cut(s) 235, 313, 513
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 319
Bse118I RCCGGY 1 cut(s) 375
Bse1I ACTGG 2 cut(s) 72, 664
Bse3DI GCAATG 2 cut(s) 94, 406
Bse8I GATNNNNATC 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 235, 313, 513
BseGI GGATG 2 cut(s) 257, 685
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 2 cut(s) 109, 319
BseMI GCAATG 2 cut(s) 94, 406
BseMII CTCAG 2 cut(s) 71, 222
BseNI ACTGG 2 cut(s) 72, 664
BseXI GCAGC 1 cut(s) 73
BshFI GGCC 4 cut(s) 19, 48, 240, 375
BshNI GGYRCC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 152, 376
BslFI GGGAC 2 cut(s) 38, 279
BslI CCNNNNNNNGG 2 cut(s) 109, 319
BsmFI GGGAC 2 cut(s) 38, 279
BsmI GAATGC 2 cut(s) 245, 292
BsnI GGCC 4 cut(s) 19, 48, 240, 375
Bsp143I GATC 2 cut(s) 307, 331
BspANI GGCC 4 cut(s) 19, 48, 240, 375
BspCNI CTCAG 2 cut(s) 70, 221
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 94, 406
BsrFI RCCGGY 1 cut(s) 375
BsrI ACTGG 2 cut(s) 72, 664
BssAI RCCGGY 1 cut(s) 375
BssECI CCNNGG 3 cut(s) 235, 313, 513
BssMI GATC 2 cut(s) 307, 331
BssT1I CCWWGG 2 cut(s) 313, 513
Bst4CI ACNGT 4 cut(s) 141, 304, 446, 652
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 2 cut(s) 57, 208
BstF5I GGATG 2 cut(s) 257, 685
BstKTI GATC 2 cut(s) 310, 334
BstMBI GATC 2 cut(s) 307, 331
BstMWI GCNNNNNNNGC 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 663
BstX2I RGATCY 1 cut(s) 307
BstYI RGATCY 1 cut(s) 307
BsuRI GGCC 4 cut(s) 19, 48, 240, 375
BtgZI GCGATG 1 cut(s) 6
BtsCI GGATG 2 cut(s) 257, 685
BtsIMutI CAGTG 2 cut(s) 555, 626
Cac8I GCNNGC 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 67
CciI TCATGA 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 375
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 474
CviAII CATG 5 cut(s) 37, 192, 242, 329, 642
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 2 cut(s) 57, 208
DpnI GATC 2 cut(s) 309, 333
DpnII GATC 2 cut(s) 307, 331
EaeI YGGCCR 2 cut(s) 238, 373
Eco130I CCWWGG 2 cut(s) 313, 513
Eco32I GATATC 1 cut(s) 124
Eco57I CTGAAG 3 cut(s) 253, 579, 621
EcoO109I RGGNCCY 1 cut(s) 46
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 2 cut(s) 313, 513
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 2 cut(s) 313, 513
FaeI CATG 5 cut(s) 40, 195, 245, 332, 645
FaqI GGGAC 2 cut(s) 38, 279
FatI CATG 5 cut(s) 36, 191, 241, 328, 641
FauNDI CATATG 1 cut(s) 461
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 62
FokI GGATG 1 cut(s) 244
Fsp4HI GCNGC 1 cut(s) 62
FspBI CTAG 4 cut(s) 50, 381, 471, 477
GluI GCNGC 1 cut(s) 62
HaeIII GGCC 4 cut(s) 19, 48, 240, 375
HapII CCGG 2 cut(s) 152, 376
Hin1II CATG 5 cut(s) 40, 195, 245, 332, 645
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 5 cut(s) 171, 212, 350, 385, 537
HpaII CCGG 2 cut(s) 152, 376
Hpy166II GTNNAC 2 cut(s) 118, 510
Hpy188I TCNGA 2 cut(s) 176, 211
Hpy188III TCNNGA 3 cut(s) 283, 329, 522
Hpy8I GTNNAC 2 cut(s) 118, 510
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 4 cut(s) 141, 304, 446, 652
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 5 cut(s) 186, 245, 359, 399, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 105
HpyF3I CTNAG 2 cut(s) 57, 208
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 5 cut(s) 40, 195, 245, 332, 645
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 2 cut(s) 307, 331
LpnPI CCDG 7 cut(s) 53, 165, 256, 310, 389, 621, 677
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 1 cut(s) 538
MaeI CTAG 4 cut(s) 50, 381, 471, 477
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 1 cut(s) 165
MalI GATC 2 cut(s) 309, 333
MboI GATC 2 cut(s) 307, 331
MboII GAAGA 3 cut(s) 572, 614, 668
MflI RGATCY 1 cut(s) 307
MluCI AATT 3 cut(s) 30, 611, 673
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 7 cut(s) 37, 66, 99, 245, 316, 355, 639
Mph1103I ATGCAT 1 cut(s) 247
MseI TTAA 6 cut(s) 29, 33, 203, 225, 407, 672
MspI CCGG 2 cut(s) 152, 376
Mva1269I GAATGC 2 cut(s) 245, 292
MwoI GCNNNNNNNGC 1 cut(s) 105
NdeI CATATG 1 cut(s) 461
NdeII GATC 2 cut(s) 307, 331
NlaIII CATG 5 cut(s) 40, 195, 245, 332, 645
NlaIV GGNNCC 1 cut(s) 467
NmeAIII GCCGAG 1 cut(s) 216
NsiI ATGCAT 1 cut(s) 247
PacI TTAATTAA 1 cut(s) 33
PagI TCATGA 1 cut(s) 328
PctI GAATGC 2 cut(s) 245, 292
PfeI GAWTC 5 cut(s) 171, 212, 350, 385, 537
PflFI GACNNNGTC 1 cut(s) 90
PflMI CCANNNNNTGG 1 cut(s) 319
PkrI GCNGC 1 cut(s) 63
Ppu21I YACGTR 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 467
PspPI GGNCC 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 90
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
SaqAI TTAA 6 cut(s) 29, 33, 203, 225, 407, 672
SatI GCNGC 1 cut(s) 62
Sau3AI GATC 2 cut(s) 307, 331
Sau96I GGNCC 1 cut(s) 46
ScaI AGTACT 1 cut(s) 475
SetI ASST 9 cut(s) 91, 237, 269, 327, 530, 573, 597, 601, 640
SfaNI GCATC 1 cut(s) 538
Sse9I AATT 3 cut(s) 30, 611, 673
SspMI CTAG 4 cut(s) 50, 381, 471, 477
StyI CCWWGG 2 cut(s) 313, 513
TaaI ACNGT 4 cut(s) 141, 304, 446, 652
TaiI ACGT 1 cut(s) 597
TasI AATT 3 cut(s) 30, 611, 673
TatI WGTACW 1 cut(s) 473
TfiI GAWTC 5 cut(s) 171, 212, 350, 385, 537
Tru1I TTAA 6 cut(s) 29, 33, 203, 225, 407, 672
Tru9I TTAA 6 cut(s) 29, 33, 203, 225, 407, 672
TscAI CASTG 2 cut(s) 562, 633
TseI GCWGC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 317, 448, 630
TspRI CASTG 2 cut(s) 562, 633
Tth111I GACNNNGTC 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 319
XapI RAATTY 1 cut(s) 611
XspI CTAG 4 cut(s) 50, 381, 471, 477
ZrmI AGTACT 1 cut(s) 475
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.