RchiOBHm_Chr1g0347101

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000113
Physical Location & Seq
Reverse (-)
39735185 .. 39735894
710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57325

Sequence Viewer

Length: 480 bp
ATGCCGAATCACTCTCATTTGGGTATTGTAATGTTTTATGGTTTTGGTTATGATTCCACCATTGACGACTACAAGGTTGTATTTGGCTGCAAAGGCGAAAGAAATGGTACTCTTGCAACCGCAGTTGTGATGTTTCAGCTCAAAACAGGGTCATGGAGGACTATTGATGGCCTCGATTATGTTAATTTGAATGGGCAGGTACCTAGTGCAAGGATCGTGTCCTTTGATTCAGCAGAGGAGACATTTCAGGAGTTGATTCCATTGTCATATCATAGTCGGGACGGAAGGTATATCTCTGCTCGGATTGAGATTGCTGAAAATGGTCTCTTGGTATATATTTATAACAGCAGTGAAATTACAATGTGGGCGATGAAAGAATCTTGGACTAAAGTTATGCAAATTCGCACAGGAATACATCAACTTCCTCAAGGAGATCGTTACAGTTTTTCTAATCCTATATGCATTTTTAGAGAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

159

Amino Acids

18.18

Weight (kDa)

6.06

Isoelectric Point (pI)

25.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 10 - 139 1e-05 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 187
Acc65I GGTACC 1 cut(s) 199
AccB1I GGYRCC 1 cut(s) 199
AciI CCGC 1 cut(s) 120
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 399
AfaI GTAC 2 cut(s) 109, 201
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw26I GTCTC 2 cut(s) 233, 329
AlwI GGATC 1 cut(s) 221
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 399
Asp718I GGTACC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 199
BbvI GCAGC 1 cut(s) 74
BccI CCATC 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 233, 329
BfaI CTAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 329
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 1 cut(s) 199
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 233, 329
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 213, 433
BspACI CCGC 1 cut(s) 120
BspANI GGCC 1 cut(s) 171
BspLI GGNNCC 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 329
BssMI GATC 2 cut(s) 213, 433
Bst4CI ACNGT 2 cut(s) 443, 477
BstKTI GATC 2 cut(s) 216, 436
BstMAI GTCTC 2 cut(s) 233, 329
BstMBI GATC 2 cut(s) 213, 433
BstMWI GCNNNNNNNGC 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 383
BtsI GCAGTG 1 cut(s) 355
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 187
Csp6I GTAC 2 cut(s) 108, 200
CviAII CATG 1 cut(s) 153
CviJI RGCY 3 cut(s) 87, 139, 171
CviKI_1 RGCY 3 cut(s) 87, 139, 171
CviQI GTAC 2 cut(s) 108, 200
DpnI GATC 2 cut(s) 215, 435
DpnII GATC 2 cut(s) 213, 433
Eco31I GGTCTC 1 cut(s) 329
EcoT22I ATGCAT 1 cut(s) 464
FaeI CATG 1 cut(s) 156
FaqI GGGAC 1 cut(s) 293
FatI CATG 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 88
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 1 cut(s) 156
HinfI GANTC 5 cut(s) 7, 53, 227, 256, 377
Hpy188I TCNGA 1 cut(s) 303
Hpy188III TCNNGA 2 cut(s) 248, 278
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 2 cut(s) 443, 477
HpyCH4V TGCA 5 cut(s) 90, 116, 209, 397, 462
HpyF10VI GCNNNNNNNGC 1 cut(s) 93
Hsp92II CATG 1 cut(s) 156
KpnI GGTACC 1 cut(s) 203
Kzo9I GATC 2 cut(s) 213, 433
LpnPI CCDG 4 cut(s) 132, 182, 233, 393
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 437
MalI GATC 2 cut(s) 215, 435
MboI GATC 2 cut(s) 213, 433
MluCI AATT 3 cut(s) 184, 354, 399
MnlI CCTC 4 cut(s) 150, 182, 229, 435
Mph1103I ATGCAT 1 cut(s) 464
MseI TTAA 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 93
NdeII GATC 2 cut(s) 213, 433
NlaIII CATG 1 cut(s) 156
NlaIV GGNNCC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 464
PfeI GAWTC 5 cut(s) 7, 53, 227, 256, 377
PkrI GCNGC 1 cut(s) 89
PsiI TTATAA 1 cut(s) 342
PspN4I GGNNCC 1 cut(s) 201
RsaI GTAC 2 cut(s) 109, 201
RsaNI GTAC 2 cut(s) 108, 200
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 2 cut(s) 213, 433
SetI ASST 5 cut(s) 78, 141, 201, 205, 290
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 3 cut(s) 184, 354, 399
SsiI CCGC 1 cut(s) 120
SspMI CTAG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 443, 477
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 184, 354, 399
TfiI GAWTC 5 cut(s) 7, 53, 227, 256, 377
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 1 cut(s) 355
XapI RAATTY 1 cut(s) 399
XspI CTAG 1 cut(s) 204
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.