Rmu_co8324277.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8324277.1
OG0000113
Physical Location & Seq
Forward (+)
124 .. 897
774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8324277.1_g000001.1.cds

Sequence Viewer

Length: 774 bp
atgttatggaatccttgcactagagaatccaaggtgttaccggaacctccttctgagctctacctaaagttttatggattcggttatgattccacaaccgatgattacaagttaatagtgggattgtctgcttccagcgccagtgaatatgttgcttttgcgtttacactaaaaacgggttcatggaggaaggttcagagcctgaaccagaattttagggtgctttggaatggctgtttggtaaacgaaactctacattgggtattaaatgaacgggatgagtttcgtagggtgattgcttccaagttagtgtcatttgacttagccgaggagaaatttcatgagattgcattcccatattttcctaattctgttgacagatgtaatttggttgcaagagttggaaatattagaaattctttaatcttacactgtggacccatctcgaccagacccatctcaaccagttctaggttagattttaggatttgggtgatgaaggaatatggagtcgagaaatcctggaatgaagtcatgaaaatcccttcggagattctgcccggagatcatttcaggtgcgagaggcctttatgcatttctgatgatggtgcagcaactttgattgatgtctttgatgtatatgacgatcgctgcttctttacattatacaatccgaaggaaaagacatgtaggaacgttactgacaattgtgtgtctaaaccggcaacttatgtagaaactttagtttccccattaacaggcagtggcgtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

257

Amino Acids

29.39

Weight (kDa)

5.88

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 696
AcsI RAATTY 3 cut(s) 211, 335, 415
AfiI CCNNNNNNNGG 2 cut(s) 471, 758
AflIII ACRYGT 1 cut(s) 686
AjnI CCWGG 1 cut(s) 521
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
Alw21I GWGCWC 1 cut(s) 60
AlwNI CAGNNNCTG 1 cut(s) 202
AoxI GGCC 1 cut(s) 584
ApeKI GCWGC 2 cut(s) 611, 651
ApoI RAATTY 3 cut(s) 211, 335, 415
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 437
AsuC2I CCSGG 1 cut(s) 561
AsuHPI GGTGA 2 cut(s) 304, 505
AvaII GGWCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 623, 638
BccI CCATC 3 cut(s) 449, 464, 599
BciT130I CCWGG 1 cut(s) 523
BcnI CCSGG 1 cut(s) 561
BfaI CTAG 2 cut(s) 21, 471
BfoI RGCGCY 1 cut(s) 141
BisI GCNGC 2 cut(s) 612, 652
BlsI GCNGC 2 cut(s) 613, 653
Bme1390I CCNGG 2 cut(s) 523, 561
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 2 cut(s) 45, 439
BmrFI CCNGG 2 cut(s) 523, 561
BpuMI CCSGG 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 30, 327
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 471, 758
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 141, 465
BseBI CCWGG 1 cut(s) 523
BseDI CCNNGG 2 cut(s) 30, 327
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 471, 758
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 2 cut(s) 141, 465
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 623, 638
BsgI GTGCAG 1 cut(s) 630
Bsh1285I CGRYCG 1 cut(s) 649
BshFI GGCC 1 cut(s) 586
BsiEI CGRYCG 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 3 cut(s) 41, 561, 722
BslI CCNNNNNNNGG 2 cut(s) 471, 758
BsmI GAATGC 1 cut(s) 350
BsnI GGCC 1 cut(s) 586
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 2 cut(s) 565, 646
BspANI GGCC 1 cut(s) 586
BspCNI CTCAG 1 cut(s) 46
BspHI TCATGA 2 cut(s) 340, 534
BspLI GGNNCC 2 cut(s) 45, 439
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 141, 465
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 2 cut(s) 30, 327
BssMI GATC 2 cut(s) 565, 646
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 523
Bst4CI ACNGT 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 54, 322
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 2 cut(s) 568, 649
BstMBI GATC 2 cut(s) 565, 646
BstMCI CGRYCG 1 cut(s) 649
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstNI CCWGG 1 cut(s) 523
BstNSI RCATGY 1 cut(s) 690
BstSCI CCNGG 2 cut(s) 521, 559
BstV1I GCAGC 2 cut(s) 623, 638
BsuRI GGCC 1 cut(s) 586
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 3 cut(s) 148, 430, 769
CaiI CAGNNNCTG 1 cut(s) 202
CciI TCATGA 2 cut(s) 340, 534
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 1 cut(s) 437
CviAII CATG 4 cut(s) 183, 341, 535, 687
CviJI RGCY 5 cut(s) 58, 201, 234, 326, 586
CviKI_1 RGCY 5 cut(s) 58, 201, 234, 326, 586
DdeI CTNAG 2 cut(s) 54, 322
DpnI GATC 2 cut(s) 567, 648
DpnII GATC 2 cut(s) 565, 646
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 30
Eco147I AGGCCT 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 58
EcoICRI GAGCTC 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 521
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 596
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 186, 344, 538, 690
FatI CATG 4 cut(s) 182, 340, 534, 686
Fnu4HI GCNGC 2 cut(s) 612, 652
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 612, 652
FspBI CTAG 2 cut(s) 21, 471
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 612, 652
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 586
HapII CCGG 3 cut(s) 41, 561, 722
HhaI GCGC 1 cut(s) 140
Hin1II CATG 4 cut(s) 186, 344, 538, 690
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 6 cut(s) 10, 26, 78, 89, 510, 553
HpaII CCGG 3 cut(s) 41, 561, 722
HphI GGTGA 2 cut(s) 304, 505
Hpy166II GTNNAC 4 cut(s) 165, 244, 376, 437
Hpy188I TCNGA 5 cut(s) 55, 198, 550, 601, 675
Hpy188III TCNNGA 4 cut(s) 341, 445, 514, 535
Hpy8I GTNNAC 4 cut(s) 165, 244, 376, 437
HpyAV CCTTC 5 cut(s) 60, 184, 493, 555, 670
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 5 cut(s) 18, 350, 395, 594, 611
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 2 cut(s) 54, 322
HpySE526I ACGT 1 cut(s) 696
Hsp92II CATG 4 cut(s) 186, 344, 538, 690
HspAI GCGC 1 cut(s) 138
Kzo9I GATC 2 cut(s) 565, 646
Lsp1109I GCAGC 2 cut(s) 623, 638
MaeI CTAG 2 cut(s) 21, 471
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 2 cut(s) 36, 697
MalI GATC 2 cut(s) 567, 648
MboI GATC 2 cut(s) 565, 646
MfeI CAATTG 1 cut(s) 706
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 6 cut(s) 211, 335, 367, 385, 415, 706
MlyI GAGTC 1 cut(s) 519
MmeI TCCRAC 1 cut(s) 382
MnlI CCTC 4 cut(s) 57, 180, 322, 576
Mph1103I ATGCAT 1 cut(s) 596
MseI TTAA 4 cut(s) 113, 266, 422, 755
MspI CCGG 3 cut(s) 41, 561, 722
MspR9I CCNGG 2 cut(s) 523, 561
MunI CAATTG 1 cut(s) 706
Mva1269I GAATGC 1 cut(s) 350
MvaI CCWGG 1 cut(s) 523
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 1 cut(s) 561
NdeII GATC 2 cut(s) 565, 646
NlaIII CATG 4 cut(s) 186, 344, 538, 690
NlaIV GGNNCC 2 cut(s) 45, 439
NmeAIII GCCGAG 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 596
NspI RCATGY 1 cut(s) 690
PagI TCATGA 2 cut(s) 340, 534
PceI AGGCCT 1 cut(s) 586
PciI ACATGT 1 cut(s) 686
PctI GAATGC 1 cut(s) 350
PfeI GAWTC 5 cut(s) 10, 26, 78, 89, 553
PfoI TCCNGGA 1 cut(s) 521
PkrI GCNGC 2 cut(s) 613, 653
Ple19I CGATCG 1 cut(s) 649
PleI GAGTC 1 cut(s) 518
PpsI GAGTC 1 cut(s) 518
PscI ACATGT 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 696
Psp6I CCWGG 1 cut(s) 521
PspGI CCWGG 1 cut(s) 521
PspN4I GGNNCC 2 cut(s) 45, 439
PspPI GGNCC 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 202
PvuI CGATCG 1 cut(s) 649
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 4 cut(s) 113, 266, 422, 755
SatI GCNGC 2 cut(s) 612, 652
Sau3AI GATC 2 cut(s) 565, 646
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 1 cut(s) 519
ScrFI CCNGG 2 cut(s) 523, 561
SduI GDGCHC 1 cut(s) 60
SetI ASST 8 cut(s) 36, 49, 60, 66, 195, 476, 578, 699
SinI GGWCC 1 cut(s) 437
Sse9I AATT 6 cut(s) 211, 335, 367, 385, 415, 706
SseBI AGGCCT 1 cut(s) 586
SspI AATATT 1 cut(s) 409
SspMI CTAG 2 cut(s) 21, 471
SstI GAGCTC 1 cut(s) 60
StuI AGGCCT 1 cut(s) 586
StyD4I CCNGG 2 cut(s) 521, 559
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 1 cut(s) 699
TaqI TCGA 2 cut(s) 446, 513
TasI AATT 6 cut(s) 211, 335, 367, 385, 415, 706
TfiI GAWTC 5 cut(s) 10, 26, 78, 89, 553
Tru1I TTAA 4 cut(s) 113, 266, 422, 755
Tru9I TTAA 4 cut(s) 113, 266, 422, 755
TscAI CASTG 3 cut(s) 148, 437, 769
TseI GCWGC 2 cut(s) 611, 651
TspDTI ATGAA 6 cut(s) 171, 285, 329, 512, 543, 551
TspRI CASTG 3 cut(s) 148, 437, 769
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 3 cut(s) 211, 335, 415
XceI RCATGY 1 cut(s) 690
XspI CTAG 2 cut(s) 21, 471
Zsp2I ATGCAT 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.