Rroxscaffold_2G00155920

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000113
Physical Location & Seq
Reverse (-)
92397918 .. 92399343
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00155920.1

Sequence Viewer

Length: 753 bp
ATGAAAATGGAAACAAGCAGCAGCAGCAGCTCATTTCCCATTACTAGCAAAGATCTTCCTTGCGAGATCATAGAGGAAATTCTGCTGCAGCTGCCGGTCAAGTCGCTGCTCCGTTTCAAATGCGTGAGCAAATCATGGCTTAATCTCATCTCCGACCACAAATTCATCAAGTCACACCTTCACCACTCCACCAAACAACACCCTCACCACGATGATGATGATGGTGATCGAATATCACACACACATCTTATGCTCTCCTCAACAACCCTCATTCACTCGCTCCATCTACAACTACCAAAAGCTCGTACTAAACAAGAAGAAGAAGCCCGAGCTGCTGCTGCTGCTGCTCCAACTGATGCAGATGATGCAGTAGTACTCGAGTCCATGGTGGAGTACCCGGTGGCATCGACGGTGAGGAGGCCAGCTGTCAAAGACATCAAGATCGTCGGTTCCTGCAACGGCTTGCTATGCTTGGTGCTCGACTCCCAACACATGATCATATACAACCCCTCCACCAGGCACGTTCAAGAAGTCCCCAACCCAGAGGAAACTGTAGTCGGTAAAGATTACTTTTACGGTTTCGGTTACGATTCTCGCAACGAGGACTGTAAAATAGTGAGGGCCACTTCCTCGAGTAGGGATGGCAATTTCGTCACCCAACTTGACATCTTTACTTTGAAGACCAACTCTTGGCGGACAAAACCAAAACCCTCCCCTTTTATTTCATGTCCAGCGTGGTTGGTACCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1 FBA_3

Protein Analysis

250

Amino Acids

28.08

Weight (kDa)

6.66

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 18 - 56 5.2e-10 F-box domain
F-box-like PF12937 18 - 54 9.4e-07 F-box-like
FBA_1 PF07734 143 - 236 1.2e-13 F-box associated beta propeller domain
FBA_3 PF08268 145 - 236 4.8e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41473 AT3G16210
fragaria_vesca FvH4_1g00300 FvH4_1g03000 FvH4_1g03001 FvH4_2g08290 FvH4_2g08290 FvH4_3g33320 FvH4_3g33531 FvH4_3g40660 FvH4_3g41160 FvH4_4g09850 FvH4_4g09850 FvH4_4g09850 FvH4_6g33740 FvH4_6g33751 FvH4_6g39180 FvH4_6g39910 FvH4_6g39910 FvH4_6g39910 FvH4_6g39930 FvH4_6g39930 FvH4_6g40000 FvH4_6g40001 FvH4_6g40002 FvH4_6g40010 FvH4_6g40030 FvH4_6g40070 FvH4_6g40080 FvH4_6g40090 FvH4_6g47950 FvH4_6g47950 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g09840 FvH4_7g25410 FvH4_7g25772 FvH4_7g25790 FvH4_7g25790
malus_domestica MD00G1070000.v1.1 MD00G1070100.v1.1 MD02G1002000.v1.1 MD04G1162000.v1.1 MD09G1129200.v1.1 MD09G1144400.v1.1 MD09G1144500.v1.1 MD15G1145500.v1.1 MD17G1124300.v1.1
prunus_persica Prupe.1G567200_v2.0.a1 Prupe.3G191200_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.3G191300_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1 Prupe.7G269000_v2.0.a1
pyrus_communis pycom02g00080 pycom02g00090 pycom09g05450 pycom09g06390 pycom15g13040 pycom15g13060 pycom17g11570
rosa_chinensis RchiOBHm_Chr1g0328801 RchiOBHm_Chr1g0347091 RchiOBHm_Chr1g0347101 RchiOBHm_Chr1g0347131 RchiOBHm_Chr1g0347171 RchiOBHm_Chr1g0347211 RchiOBHm_Chr1g0347321 RchiOBHm_Chr1g0347341 RchiOBHm_Chr1g0347361 RchiOBHm_Chr2g0084671 RchiOBHm_Chr2g0153011 RchiOBHm_Chr2g0154441 RchiOBHm_Chr2g0154521 RchiOBHm_Chr2g0154531 RchiOBHm_Chr2g0154541 RchiOBHm_Chr2g0154551 RchiOBHm_Chr2g0154561 RchiOBHm_Chr2g0154571 RchiOBHm_Chr2g0154581 RchiOBHm_Chr2g0154591 RchiOBHm_Chr2g0154601 RchiOBHm_Chr2g0154611 RchiOBHm_Chr2g0154621 RchiOBHm_Chr2g0154641 RchiOBHm_Chr2g0154651 RchiOBHm_Chr2g0154661 RchiOBHm_Chr2g0154671 RchiOBHm_Chr2g0154681 RchiOBHm_Chr2g0154711 RchiOBHm_Chr2g0167131 RchiOBHm_Chr5g0060681 RchiOBHm_Chr5g0060691 RchiOBHm_Chr5g0060711 RchiOBHm_Chr5g0061011 RchiOBHm_Chr6g0275741
rosa_laevigata RLG00000013437 RLG00000015630 RLG00000020778 RLG00000020784 RLG00000020785 RLG00000020787 RLG00000020788 RLG00000020790 RLG00000020791 RLG00000020792 RLG00000020794 RLG00000020795 RLG00000020796 RLG00000020797 RLG00000021699 RLG00000028755 RLG00000035394
rosa_multiflora Rmu_co8119446.1_g000001 Rmu_co8175998.1_g000001 Rmu_co8210288.1_g000001 Rmu_co8317779.1_g000001 Rmu_co8324277.1_g000001 Rmu_co8343471.1_g000001 Rmu_co8346313.1_g000001 Rmu_co8407145.1_g000001 Rmu_co8411851.1_g000001 Rmu_co8437621.1_g000001 Rmu_sc0000218.1_g000006 Rmu_sc0000640.1_g000006 Rmu_sc0000864.1_g000001 Rmu_sc0000864.1_g000002 Rmu_sc0000864.1_g000004 Rmu_sc0000864.1_g000007 Rmu_sc0001004.1_g000008 Rmu_sc0001004.1_g000016 Rmu_sc0001004.1_g000017 Rmu_sc0001004.1_g000023 Rmu_sc0001004.1_g000026 Rmu_sc0001004.1_g000027 Rmu_sc0001004.1_g000033 Rmu_sc0001004.1_g000034 Rmu_sc0001004.1_g000035 Rmu_sc0001027.1_g000008 Rmu_sc0001027.1_g000011 Rmu_sc0001027.1_g000015 Rmu_sc0001027.1_g000019 Rmu_sc0001027.1_g000021 Rmu_sc0001027.1_g000022 Rmu_sc0001027.1_g000023 Rmu_sc0001027.1_g000026 Rmu_sc0001027.1_g000028 Rmu_sc0001027.1_g000029 Rmu_sc0002705.1_g000031 Rmu_sc0002705.1_g000033 Rmu_sc0002705.1_g000036 Rmu_sc0002705.1_g000037 Rmu_sc0003808.1_g000017 Rmu_sc0003808.1_g000018 Rmu_sc0004001.1_g000015 Rmu_sc0006475.1_g000019 Rmu_sc0008818.1_g000006 Rmu_sc0013419.1_g000015 Rmu_sc0015771.1_g000021 Rmu_sc0016102.1_g000001 Rmu_sc0016442.1_g000001 Rmu_sc0016843.1_g000001 Rmu_sc0016843.1_g000002 Rmu_sc0032116.1_g000001
rosa_roxburghii Rroxscaffold_1G00019640 Rroxscaffold_1G00020010 Rroxscaffold_1G00020070 Rroxscaffold_1G00020110 Rroxscaffold_2G00083690 Rroxscaffold_2G00094170 Rroxscaffold_2G00094180 Rroxscaffold_2G00094190 Rroxscaffold_2G00094200 Rroxscaffold_2G00094210 Rroxscaffold_2G00094220 Rroxscaffold_2G00094230 Rroxscaffold_2G00094240 Rroxscaffold_2G00094250 Rroxscaffold_2G00094260 Rroxscaffold_2G00094330 Rroxscaffold_2G00155920 Rroxscaffold_3G00250730 Rroxscaffold_4G00307870 Rroxscaffold_4G00307880 Rroxscaffold_4G00307900 Rroxscaffold_4G00307910 Rroxscaffold_4G00307970 Rroxscaffold_7G00192940
rosa_rugosa Rorug01G0185500 Rorug01G0185600 Rorug01G0185900 Rorug01G0186100 Rorug02G0085700 Rorug02G0444400 Rorug02G0444600 Rorug02G0444700 Rorug02G0444700 Rorug02G0444800 Rorug04G0120600 Rorug05G0332700 Rorug05G0332800 Rorug05G0332900 Rorug05G0333000 Rorug05G0336000 Rorug06G0095900
rosa_samantha Rh2AG003200 Rh2BG004100 Rh2BG606800 Rh2CG004200 Rh2DG003900 Rh2DG531100 Rh6BG210600 Rh6CG214300 Rh6DG203900
rosa_wichuraiana Rw1G007390 Rw1G017020 Rw1G017100 Rw2G000310 Rw2G041790 Rw2G041850 Rw2G041860 Rw2G041870 Rw2G041880 Rw2G041890 Rw2G041900 Rw2G041920 Rw2G041940 Rw2G049600 Rw4G015020 Rw5G037320 Rw5G037330 Rw5G037340 Rw6G018130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 742
AccB1I GGYRCC 1 cut(s) 742
AccB7I CCANNNNNTGG 1 cut(s) 690
AciI CCGC 1 cut(s) 694
AcsI RAATTY 2 cut(s) 78, 161
AfaI GTAC 4 cut(s) 307, 375, 395, 744
AfiI CCNNNNNNNGG 3 cut(s) 516, 636, 690
AgsI TTSAA 3 cut(s) 118, 527, 679
AjnI CCWGG 1 cut(s) 515
AluBI AGCT 5 cut(s) 30, 91, 302, 332, 425
AluI AGCT 5 cut(s) 30, 91, 302, 332, 425
Alw21I GWGCWC 1 cut(s) 480
Ama87I CYCGRG 3 cut(s) 327, 377, 631
AoxI GGCC 2 cut(s) 419, 621
ApoI RAATTY 2 cut(s) 78, 161
Asp718I GGTACC 1 cut(s) 742
AspS9I GGNCC 1 cut(s) 621
AsuC2I CCSGG 1 cut(s) 398
AsuHPI GGTGA 5 cut(s) 173, 197, 236, 424, 646
AvaI CYCGRG 3 cut(s) 327, 377, 631
BanI GGYRCC 1 cut(s) 742
BbsI GAAGAC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 480
BccI CCATC 3 cut(s) 215, 291, 635
BceAI ACGGC 1 cut(s) 475
BciT130I CCWGG 1 cut(s) 517
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 1 cut(s) 398
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 2 cut(s) 86, 552
BglII AGATCT 1 cut(s) 52
BmcAI AGTACT 1 cut(s) 375
Bme1390I CCNGG 2 cut(s) 398, 517
BmeT110I CYCGRG 3 cut(s) 327, 377, 631
BmgT120I GGNCC 1 cut(s) 621
BmiI GGNNCC 2 cut(s) 451, 744
BmrFI CCNGG 2 cut(s) 398, 517
BmsI GCATC 3 cut(s) 346, 355, 413
BpiI GAAGAC 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 398
BsaBI GATNNNNATC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 384
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 3 cut(s) 516, 636, 690
Bse118I RCCGGY 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 517
BseDI CCNNGG 1 cut(s) 384
BseGI GGATG 1 cut(s) 646
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 3 cut(s) 516, 636, 690
BseRI GAGGAG 2 cut(s) 247, 430
BshFI GGCC 2 cut(s) 421, 623
BshNI GGYRCC 1 cut(s) 742
BsiHKAI GWGCWC 1 cut(s) 480
BsiHKCI CYCGRG 3 cut(s) 327, 377, 631
BsiSI CCGG 2 cut(s) 95, 398
BslFI GGGAC 1 cut(s) 518
BslI CCNNNNNNNGG 3 cut(s) 516, 636, 690
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 2 cut(s) 421, 623
BsoBI CYCGRG 3 cut(s) 327, 377, 631
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 5 cut(s) 52, 66, 226, 441, 495
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 1 cut(s) 694
BspANI GGCC 2 cut(s) 421, 623
BspLI GGNNCC 2 cut(s) 451, 744
BspMAI CTGCAG 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 742
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 384
BssMI GATC 5 cut(s) 52, 66, 226, 441, 495
BssT1I CCWWGG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 517
Bst4CI ACNGT 4 cut(s) 412, 553, 578, 608
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 2 cut(s) 423, 464
BstDSI CCRYGG 1 cut(s) 384
BstENI CCTNNNNNAGG 2 cut(s) 514, 634
BstF5I GGATG 1 cut(s) 646
BstKTI GATC 5 cut(s) 55, 69, 229, 444, 498
BstMBI GATC 5 cut(s) 52, 66, 226, 441, 495
BstMWI GCNNNNNNNGC 9 cut(s) 24, 27, 91, 332, 338, 341, 344, 365, 468
BstNI CCWGG 1 cut(s) 517
BstSCI CCNGG 2 cut(s) 396, 515
BstSFI CTRYAG 2 cut(s) 86, 552
BstV2I GAAGAC 1 cut(s) 686
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 421, 623
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 646
Cac8I GCNNGC 2 cut(s) 423, 464
Cfr10I RCCGGY 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 621
Csp6I GTAC 4 cut(s) 306, 374, 394, 743
CviAII CATG 4 cut(s) 135, 385, 493, 726
CviQI GTAC 4 cut(s) 306, 374, 394, 743
DpnI GATC 5 cut(s) 54, 68, 228, 443, 497
DpnII GATC 5 cut(s) 52, 66, 226, 441, 495
EciI GGCGGA 1 cut(s) 709
Eco130I CCWWGG 1 cut(s) 384
Eco88I CYCGRG 3 cut(s) 327, 377, 631
EcoNI CCTNNNNNAGG 2 cut(s) 514, 634
EcoRII CCWGG 1 cut(s) 515
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 4 cut(s) 138, 388, 496, 729
FaiI YATR 9 cut(s) 71, 136, 251, 386, 469, 494, 500, 502, 727
FaqI GGGAC 1 cut(s) 518
FatI CATG 4 cut(s) 134, 384, 492, 725
FbaI TGATCA 1 cut(s) 495
FokI GGATG 1 cut(s) 653
FspBI CTAG 1 cut(s) 45
HaeIII GGCC 2 cut(s) 421, 623
HapII CCGG 2 cut(s) 95, 398
Hin1II CATG 4 cut(s) 138, 388, 496, 729
HinfI GANTC 3 cut(s) 380, 482, 590
HpaII CCGG 2 cut(s) 95, 398
HphI GGTGA 5 cut(s) 173, 197, 236, 424, 646
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 439, 527
Hpy99I CGWCG 2 cut(s) 412, 449
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 4 cut(s) 412, 553, 578, 608
HpyCH4IV ACGT 1 cut(s) 522
HpyCH4V TGCA 4 cut(s) 88, 359, 368, 456
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 27, 91, 332, 338, 341, 344, 365, 468
HpySE526I ACGT 1 cut(s) 522
Hsp92II CATG 4 cut(s) 138, 388, 496, 729
KpnI GGTACC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 5 cut(s) 52, 66, 226, 441, 495
LmnI GCTCC 3 cut(s) 114, 285, 352
LpnPI CCDG 8 cut(s) 108, 411, 435, 466, 502, 529, 555, 744
LweI GCATC 3 cut(s) 346, 355, 413
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 522
MaeIII GTNAC 3 cut(s) 171, 584, 652
MalI GATC 5 cut(s) 54, 68, 228, 443, 497
MboI GATC 5 cut(s) 52, 66, 226, 441, 495
MboII GAAGA 4 cut(s) 47, 329, 332, 691
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 3 cut(s) 78, 161, 646
MlyI GAGTC 2 cut(s) 389, 476
MmeI TCCRAC 2 cut(s) 177, 374
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 210, 213
MspA1I CMGCKG 2 cut(s) 91, 425
MspI CCGG 2 cut(s) 95, 398
MspR9I CCNGG 2 cut(s) 398, 517
MvaI CCWGG 1 cut(s) 517
MwoI GCNNNNNNNGC 9 cut(s) 24, 27, 91, 332, 338, 341, 344, 365, 468
NciI CCSGG 1 cut(s) 398
NcoI CCATGG 1 cut(s) 384
NdeII GATC 5 cut(s) 52, 66, 226, 441, 495
NlaIII CATG 4 cut(s) 138, 388, 496, 729
NlaIV GGNNCC 2 cut(s) 451, 744
NmuCI GTSAC 2 cut(s) 171, 652
PaeR7I CTCGAG 2 cut(s) 377, 631
PfeI GAWTC 1 cut(s) 590
PflMI CCANNNNNTGG 1 cut(s) 690
PleI GAGTC 2 cut(s) 388, 476
PpsI GAGTC 2 cut(s) 388, 476
Psp6I CCWGG 1 cut(s) 515
PspGI CCWGG 1 cut(s) 515
PspN4I GGNNCC 2 cut(s) 451, 744
PspPI GGNCC 1 cut(s) 621
PspXI VCTCGAGB 2 cut(s) 377, 631
PstI CTGCAG 1 cut(s) 90
PsuI RGATCY 1 cut(s) 52
PvuII CAGCTG 2 cut(s) 91, 425
RsaI GTAC 4 cut(s) 307, 375, 395, 744
RsaNI GTAC 4 cut(s) 306, 374, 394, 743
RseI CAYNNNNRTG 2 cut(s) 210, 213
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 5 cut(s) 52, 66, 226, 441, 495
Sau96I GGNCC 1 cut(s) 621
ScaI AGTACT 1 cut(s) 375
SchI GAGTC 2 cut(s) 389, 476
ScrFI CCNGG 2 cut(s) 398, 517
SduI GDGCHC 1 cut(s) 480
SetI ASST 7 cut(s) 32, 93, 180, 304, 334, 427, 525
SfaNI GCATC 3 cut(s) 346, 355, 413
SfcI CTRYAG 2 cut(s) 86, 552
Sfr274I CTCGAG 2 cut(s) 377, 631
SlaI CTCGAG 2 cut(s) 377, 631
SmiMI CAYNNNNRTG 2 cut(s) 210, 213
SmlI CTYRAG 2 cut(s) 377, 631
SmoI CTYRAG 2 cut(s) 377, 631
Sse9I AATT 3 cut(s) 78, 161, 646
SsiI CCGC 1 cut(s) 694
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 396, 515
StyI CCWWGG 1 cut(s) 384
TaaI ACNGT 4 cut(s) 412, 553, 578, 608
TaiI ACGT 1 cut(s) 525
TaqI TCGA 5 cut(s) 229, 378, 407, 480, 632
TasI AATT 3 cut(s) 78, 161, 646
TatI WGTACW 1 cut(s) 373
TfiI GAWTC 1 cut(s) 590
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TseFI GTSAC 2 cut(s) 171, 652
Tsp45I GTSAC 2 cut(s) 171, 652
TspDTI ATGAA 3 cut(s) 17, 154, 714
TspGWI ACGGA 1 cut(s) 101
Van91I CCANNNNNTGG 1 cut(s) 690
XagI CCTNNNNNAGG 2 cut(s) 514, 634
XapI RAATTY 2 cut(s) 78, 161
XhoI CTCGAG 2 cut(s) 377, 631
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.